Experiment: KB with Dimethyl Sulfoxide 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4477 and Psyr_4478 are separated by 291 nucleotides Psyr_4478 and Psyr_4479 are separated by 48 nucleotides
Psyr_4477: Psyr_4477 - MscS Mechanosensitive ion channel, at 5,337,465 to 5,339,783
_4477
Psyr_4478: Psyr_4478 - Alpha/beta hydrolase fold protein, at 5,340,075 to 5,340,893
_4478
Psyr_4479: Psyr_4479 - 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase, at 5,340,942 to 5,341,790
_4479
Position (kb) 5340
5341 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5339.098 kb on + strand, within Psyr_4477 at 5339.155 kb on + strand, within Psyr_4477 at 5339.155 kb on + strand, within Psyr_4477 at 5339.155 kb on + strand, within Psyr_4477 at 5339.156 kb on - strand, within Psyr_4477 at 5339.156 kb on - strand, within Psyr_4477 at 5339.156 kb on - strand, within Psyr_4477 at 5339.156 kb on - strand, within Psyr_4477 at 5339.206 kb on + strand, within Psyr_4477 at 5339.206 kb on + strand, within Psyr_4477 at 5339.206 kb on + strand, within Psyr_4477 at 5339.206 kb on + strand, within Psyr_4477 at 5339.207 kb on - strand, within Psyr_4477 at 5339.207 kb on - strand, within Psyr_4477 at 5339.207 kb on - strand, within Psyr_4477 at 5339.207 kb on - strand, within Psyr_4477 at 5339.207 kb on - strand, within Psyr_4477 at 5339.207 kb on - strand, within Psyr_4477 at 5339.207 kb on - strand, within Psyr_4477 at 5339.207 kb on - strand, within Psyr_4477 at 5339.253 kb on - strand, within Psyr_4477 at 5339.253 kb on - strand, within Psyr_4477 at 5339.265 kb on + strand, within Psyr_4477 at 5339.265 kb on + strand, within Psyr_4477 at 5339.265 kb on + strand, within Psyr_4477 at 5339.266 kb on - strand, within Psyr_4477 at 5339.266 kb on - strand, within Psyr_4477 at 5339.266 kb on - strand, within Psyr_4477 at 5339.266 kb on - strand, within Psyr_4477 at 5339.316 kb on + strand, within Psyr_4477 at 5339.317 kb on - strand, within Psyr_4477 at 5339.317 kb on - strand, within Psyr_4477 at 5339.317 kb on - strand, within Psyr_4477 at 5339.317 kb on - strand, within Psyr_4477 at 5339.317 kb on - strand, within Psyr_4477 at 5339.366 kb on + strand, within Psyr_4477 at 5339.367 kb on - strand, within Psyr_4477 at 5339.367 kb on - strand, within Psyr_4477 at 5339.484 kb on - strand, within Psyr_4477 at 5339.703 kb on + strand at 5339.703 kb on + strand at 5339.703 kb on + strand at 5339.703 kb on + strand at 5339.703 kb on + strand at 5339.704 kb on - strand at 5339.704 kb on - strand at 5339.704 kb on - strand at 5339.704 kb on - strand at 5339.704 kb on - strand at 5339.704 kb on - strand at 5339.704 kb on - strand at 5339.704 kb on - strand at 5339.704 kb on - strand at 5339.704 kb on - strand at 5339.704 kb on - strand at 5339.892 kb on + strand at 5339.893 kb on - strand at 5339.893 kb on - strand at 5339.893 kb on - strand at 5339.933 kb on - strand at 5339.956 kb on + strand at 5339.957 kb on - strand at 5339.957 kb on - strand at 5339.957 kb on - strand at 5339.957 kb on - strand at 5339.957 kb on - strand at 5339.981 kb on + strand at 5339.982 kb on - strand at 5340.002 kb on + strand at 5340.002 kb on + strand at 5340.002 kb on + strand at 5340.002 kb on + strand at 5340.002 kb on + strand at 5340.002 kb on + strand at 5340.003 kb on - strand at 5340.003 kb on - strand at 5340.003 kb on - strand at 5340.003 kb on - strand at 5340.003 kb on - strand at 5340.036 kb on - strand at 5340.036 kb on - strand at 5340.111 kb on + strand at 5340.111 kb on + strand at 5340.111 kb on + strand at 5340.112 kb on - strand at 5340.112 kb on - strand at 5340.112 kb on - strand at 5340.112 kb on - strand at 5340.112 kb on - strand at 5340.112 kb on - strand at 5340.112 kb on - strand at 5340.112 kb on - strand at 5340.114 kb on + strand at 5340.114 kb on + strand at 5340.114 kb on + strand at 5340.114 kb on + strand at 5340.114 kb on + strand at 5340.114 kb on + strand at 5340.115 kb on - strand at 5340.115 kb on - strand at 5340.115 kb on - strand at 5340.115 kb on - strand at 5340.115 kb on - strand at 5340.115 kb on - strand at 5340.115 kb on - strand at 5340.115 kb on - strand at 5340.198 kb on + strand, within Psyr_4478 at 5340.198 kb on + strand, within Psyr_4478 at 5340.198 kb on + strand, within Psyr_4478 at 5340.282 kb on + strand, within Psyr_4478 at 5340.282 kb on + strand, within Psyr_4478 at 5340.283 kb on - strand, within Psyr_4478 at 5340.283 kb on - strand, within Psyr_4478 at 5340.283 kb on - strand, within Psyr_4478 at 5340.396 kb on + strand, within Psyr_4478 at 5340.396 kb on + strand, within Psyr_4478 at 5340.396 kb on + strand, within Psyr_4478 at 5340.397 kb on - strand, within Psyr_4478 at 5340.397 kb on - strand, within Psyr_4478 at 5340.397 kb on - strand, within Psyr_4478 at 5340.564 kb on + strand, within Psyr_4478 at 5340.565 kb on - strand, within Psyr_4478 at 5340.565 kb on - strand, within Psyr_4478 at 5340.813 kb on + strand at 5340.954 kb on + strand at 5340.999 kb on + strand at 5340.999 kb on + strand at 5340.999 kb on + strand at 5340.999 kb on + strand at 5340.999 kb on + strand at 5340.999 kb on + strand at 5341.000 kb on - strand at 5341.000 kb on - strand at 5341.000 kb on - strand at 5341.000 kb on - strand at 5341.155 kb on - strand, within Psyr_4479 at 5341.155 kb on - strand, within Psyr_4479 at 5341.263 kb on - strand, within Psyr_4479 at 5341.382 kb on - strand, within Psyr_4479 at 5341.552 kb on + strand, within Psyr_4479 at 5341.552 kb on + strand, within Psyr_4479 at 5341.553 kb on - strand, within Psyr_4479 at 5341.553 kb on - strand, within Psyr_4479 at 5341.563 kb on + strand, within Psyr_4479 at 5341.563 kb on + strand, within Psyr_4479 at 5341.564 kb on - strand, within Psyr_4479 at 5341.564 kb on - strand, within Psyr_4479 at 5341.779 kb on + strand at 5341.780 kb on - strand at 5341.878 kb on + strand at 5341.878 kb on + strand at 5341.879 kb on - strand at 5341.879 kb on - strand at 5341.879 kb on - strand at 5341.880 kb on + strand at 5341.880 kb on + strand at 5341.880 kb on + strand at 5341.881 kb on - strand at 5341.881 kb on - strand at 5341.881 kb on - strand at 5341.881 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol% remove 5,339,098 + Psyr_4477 0.70 +0.6 5,339,155 + Psyr_4477 0.73 -0.3 5,339,155 + Psyr_4477 0.73 +0.9 5,339,155 + Psyr_4477 0.73 +0.0 5,339,156 - Psyr_4477 0.73 +0.9 5,339,156 - Psyr_4477 0.73 +0.4 5,339,156 - Psyr_4477 0.73 +0.9 5,339,156 - Psyr_4477 0.73 -0.6 5,339,206 + Psyr_4477 0.75 -0.1 5,339,206 + Psyr_4477 0.75 -0.2 5,339,206 + Psyr_4477 0.75 +0.6 5,339,206 + Psyr_4477 0.75 +0.4 5,339,207 - Psyr_4477 0.75 +1.0 5,339,207 - Psyr_4477 0.75 +0.0 5,339,207 - Psyr_4477 0.75 -0.1 5,339,207 - Psyr_4477 0.75 +0.5 5,339,207 - Psyr_4477 0.75 +1.5 5,339,207 - Psyr_4477 0.75 +1.1 5,339,207 - Psyr_4477 0.75 -1.3 5,339,207 - Psyr_4477 0.75 +0.2 5,339,253 - Psyr_4477 0.77 +1.0 5,339,253 - Psyr_4477 0.77 +0.5 5,339,265 + Psyr_4477 0.78 +0.4 5,339,265 + Psyr_4477 0.78 -0.4 5,339,265 + Psyr_4477 0.78 +0.4 5,339,266 - Psyr_4477 0.78 +0.3 5,339,266 - Psyr_4477 0.78 -0.1 5,339,266 - Psyr_4477 0.78 -0.5 5,339,266 - Psyr_4477 0.78 +0.6 5,339,316 + Psyr_4477 0.80 +0.1 5,339,317 - Psyr_4477 0.80 -0.0 5,339,317 - Psyr_4477 0.80 -1.5 5,339,317 - Psyr_4477 0.80 +0.5 5,339,317 - Psyr_4477 0.80 +0.5 5,339,317 - Psyr_4477 0.80 +1.4 5,339,366 + Psyr_4477 0.82 +0.3 5,339,367 - Psyr_4477 0.82 -1.1 5,339,367 - Psyr_4477 0.82 +0.4 5,339,484 - Psyr_4477 0.87 -0.0 5,339,703 + +0.3 5,339,703 + +0.7 5,339,703 + -0.1 5,339,703 + +0.3 5,339,703 + +0.7 5,339,704 - +0.6 5,339,704 - -0.5 5,339,704 - -0.2 5,339,704 - -0.8 5,339,704 - +0.7 5,339,704 - +1.7 5,339,704 - +0.4 5,339,704 - +0.3 5,339,704 - -0.1 5,339,704 - +1.0 5,339,704 - +0.3 5,339,892 + -0.6 5,339,893 - -0.1 5,339,893 - -1.5 5,339,893 - +1.3 5,339,933 - -1.1 5,339,956 + +1.5 5,339,957 - -1.2 5,339,957 - -0.5 5,339,957 - +0.7 5,339,957 - +0.8 5,339,957 - +0.2 5,339,981 + +0.2 5,339,982 - +1.0 5,340,002 + -0.5 5,340,002 + -0.8 5,340,002 + +0.2 5,340,002 + +1.1 5,340,002 + +0.4 5,340,002 + -0.2 5,340,003 - +0.6 5,340,003 - -1.9 5,340,003 - +1.4 5,340,003 - +0.1 5,340,003 - -0.9 5,340,036 - -0.8 5,340,036 - +0.5 5,340,111 + +0.5 5,340,111 + +1.0 5,340,111 + +0.0 5,340,112 - +1.2 5,340,112 - +0.4 5,340,112 - +2.7 5,340,112 - +3.0 5,340,112 - -0.9 5,340,112 - +0.3 5,340,112 - +1.8 5,340,112 - +0.5 5,340,114 + +0.3 5,340,114 + +0.3 5,340,114 + +0.2 5,340,114 + -0.3 5,340,114 + +0.5 5,340,114 + +0.0 5,340,115 - +0.4 5,340,115 - +2.4 5,340,115 - -0.9 5,340,115 - -0.9 5,340,115 - -1.3 5,340,115 - -1.4 5,340,115 - +0.4 5,340,115 - -0.1 5,340,198 + Psyr_4478 0.15 -0.1 5,340,198 + Psyr_4478 0.15 +0.6 5,340,198 + Psyr_4478 0.15 +0.6 5,340,282 + Psyr_4478 0.25 -0.2 5,340,282 + Psyr_4478 0.25 +2.3 5,340,283 - Psyr_4478 0.25 +1.4 5,340,283 - Psyr_4478 0.25 +0.4 5,340,283 - Psyr_4478 0.25 +0.5 5,340,396 + Psyr_4478 0.39 -0.3 5,340,396 + Psyr_4478 0.39 -0.2 5,340,396 + Psyr_4478 0.39 -0.4 5,340,397 - Psyr_4478 0.39 -1.0 5,340,397 - Psyr_4478 0.39 +0.2 5,340,397 - Psyr_4478 0.39 -0.0 5,340,564 + Psyr_4478 0.60 +0.8 5,340,565 - Psyr_4478 0.60 -0.7 5,340,565 - Psyr_4478 0.60 +1.1 5,340,813 + +0.8 5,340,954 + +0.6 5,340,999 + +0.2 5,340,999 + +0.2 5,340,999 + -0.1 5,340,999 + -0.3 5,340,999 + -0.7 5,340,999 + +0.7 5,341,000 - -0.6 5,341,000 - +0.2 5,341,000 - +0.4 5,341,000 - +0.0 5,341,155 - Psyr_4479 0.25 +0.3 5,341,155 - Psyr_4479 0.25 -1.1 5,341,263 - Psyr_4479 0.38 -0.1 5,341,382 - Psyr_4479 0.52 -0.5 5,341,552 + Psyr_4479 0.72 +0.5 5,341,552 + Psyr_4479 0.72 +0.2 5,341,553 - Psyr_4479 0.72 -0.1 5,341,553 - Psyr_4479 0.72 +1.0 5,341,563 + Psyr_4479 0.73 -0.3 5,341,563 + Psyr_4479 0.73 -0.3 5,341,564 - Psyr_4479 0.73 -0.4 5,341,564 - Psyr_4479 0.73 -0.7 5,341,779 + +0.5 5,341,780 - +0.8 5,341,878 + -0.9 5,341,878 + +0.5 5,341,879 - +1.4 5,341,879 - -0.2 5,341,879 - +0.0 5,341,880 + +0.6 5,341,880 + -0.6 5,341,880 + +0.2 5,341,881 - -1.0 5,341,881 - +0.0 5,341,881 - -0.9 5,341,881 - +0.3
Or see this region's nucleotide sequence