Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0640

Experiment: KB with Dimethyl Sulfoxide 1.25 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0638 and Psyr_0639 are separated by 84 nucleotidesPsyr_0639 and Psyr_0640 are separated by 18 nucleotidesPsyr_0640 and Psyr_0641 are separated by 19 nucleotidesPsyr_0641 and Psyr_0642 overlap by 4 nucleotides Psyr_0638: Psyr_0638 - Peptidase S16, lon N-terminal, at 727,362 to 727,952 _0638 Psyr_0639: Psyr_0639 - lipoprotein, putative, at 728,037 to 728,603 _0639 Psyr_0640: Psyr_0640 - lipoprotein, putative, at 728,622 to 729,260 _0640 Psyr_0641: Psyr_0641 - smtA protein, at 729,280 to 730,029 _0641 Psyr_0642: Psyr_0642 - conserved hypothetical protein, at 730,026 to 730,331 _0642 Position (kb) 728 729 730Strain fitness (log2 ratio) -2 -1 0 1 2at 727.809 kb on + strand, within Psyr_0638at 727.834 kb on - strand, within Psyr_0638at 727.982 kb on + strandat 728.180 kb on + strand, within Psyr_0639at 728.180 kb on + strand, within Psyr_0639at 728.180 kb on + strand, within Psyr_0639at 728.181 kb on - strand, within Psyr_0639at 728.181 kb on - strand, within Psyr_0639at 728.181 kb on - strand, within Psyr_0639at 728.206 kb on + strand, within Psyr_0639at 728.206 kb on + strand, within Psyr_0639at 728.206 kb on - strand, within Psyr_0639at 728.207 kb on - strand, within Psyr_0639at 728.207 kb on - strand, within Psyr_0639at 728.284 kb on + strand, within Psyr_0639at 728.284 kb on + strand, within Psyr_0639at 728.285 kb on - strand, within Psyr_0639at 728.591 kb on + strandat 728.636 kb on - strandat 728.789 kb on - strand, within Psyr_0640at 728.789 kb on - strand, within Psyr_0640at 728.845 kb on + strand, within Psyr_0640at 728.872 kb on + strand, within Psyr_0640at 728.873 kb on - strand, within Psyr_0640at 728.875 kb on + strand, within Psyr_0640at 728.884 kb on + strand, within Psyr_0640at 728.884 kb on + strand, within Psyr_0640at 728.885 kb on - strand, within Psyr_0640at 728.938 kb on + strand, within Psyr_0640at 728.938 kb on + strand, within Psyr_0640at 728.938 kb on + strand, within Psyr_0640at 728.939 kb on - strand, within Psyr_0640at 728.939 kb on - strand, within Psyr_0640at 728.939 kb on - strand, within Psyr_0640at 729.178 kb on + strand, within Psyr_0640at 729.178 kb on + strand, within Psyr_0640at 729.179 kb on - strand, within Psyr_0640at 729.182 kb on + strand, within Psyr_0640at 729.240 kb on + strandat 729.240 kb on + strandat 729.240 kb on + strandat 729.240 kb on + strandat 729.241 kb on - strandat 729.407 kb on + strand, within Psyr_0641at 729.407 kb on + strand, within Psyr_0641at 729.407 kb on + strand, within Psyr_0641at 729.407 kb on + strand, within Psyr_0641at 729.407 kb on + strand, within Psyr_0641at 729.407 kb on + strand, within Psyr_0641at 729.407 kb on + strand, within Psyr_0641at 729.407 kb on + strand, within Psyr_0641at 729.407 kb on + strand, within Psyr_0641at 729.407 kb on + strand, within Psyr_0641at 729.407 kb on + strand, within Psyr_0641at 729.407 kb on + strand, within Psyr_0641at 729.407 kb on + strand, within Psyr_0641at 729.408 kb on - strand, within Psyr_0641at 729.408 kb on - strand, within Psyr_0641at 729.408 kb on - strand, within Psyr_0641at 729.408 kb on - strand, within Psyr_0641at 729.408 kb on - strand, within Psyr_0641at 729.408 kb on - strand, within Psyr_0641at 729.408 kb on - strand, within Psyr_0641at 729.419 kb on - strand, within Psyr_0641at 729.597 kb on - strand, within Psyr_0641at 729.597 kb on - strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.708 kb on - strand, within Psyr_0641at 729.708 kb on - strand, within Psyr_0641at 729.708 kb on - strand, within Psyr_0641at 729.708 kb on - strand, within Psyr_0641at 729.708 kb on - strand, within Psyr_0641at 729.708 kb on - strand, within Psyr_0641at 729.708 kb on - strand, within Psyr_0641at 729.708 kb on - strand, within Psyr_0641at 729.708 kb on - strand, within Psyr_0641at 729.708 kb on - strand, within Psyr_0641at 729.896 kb on - strand, within Psyr_0641at 729.943 kb on + strand, within Psyr_0641at 729.977 kb on + strandat 729.977 kb on + strandat 729.978 kb on - strandat 729.978 kb on - strandat 730.117 kb on + strand, within Psyr_0642at 730.117 kb on + strand, within Psyr_0642at 730.206 kb on + strand, within Psyr_0642at 730.206 kb on + strand, within Psyr_0642at 730.206 kb on + strand, within Psyr_0642at 730.207 kb on - strand, within Psyr_0642

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol%
remove
727,809 + Psyr_0638 0.76 -0.6
727,834 - Psyr_0638 0.80 +2.1
727,982 + +0.7
728,180 + Psyr_0639 0.25 +0.7
728,180 + Psyr_0639 0.25 -0.9
728,180 + Psyr_0639 0.25 -0.3
728,181 - Psyr_0639 0.25 -0.6
728,181 - Psyr_0639 0.25 +0.3
728,181 - Psyr_0639 0.25 +0.9
728,206 + Psyr_0639 0.30 +0.4
728,206 + Psyr_0639 0.30 +1.5
728,206 - Psyr_0639 0.30 +0.2
728,207 - Psyr_0639 0.30 +1.1
728,207 - Psyr_0639 0.30 -0.9
728,284 + Psyr_0639 0.44 -0.4
728,284 + Psyr_0639 0.44 -1.0
728,285 - Psyr_0639 0.44 +0.3
728,591 + +1.4
728,636 - -0.2
728,789 - Psyr_0640 0.26 +0.9
728,789 - Psyr_0640 0.26 +1.7
728,845 + Psyr_0640 0.35 +0.6
728,872 + Psyr_0640 0.39 +0.5
728,873 - Psyr_0640 0.39 +0.3
728,875 + Psyr_0640 0.40 +1.6
728,884 + Psyr_0640 0.41 -0.3
728,884 + Psyr_0640 0.41 +1.0
728,885 - Psyr_0640 0.41 -0.5
728,938 + Psyr_0640 0.49 -0.9
728,938 + Psyr_0640 0.49 +1.2
728,938 + Psyr_0640 0.49 +0.2
728,939 - Psyr_0640 0.50 -0.4
728,939 - Psyr_0640 0.50 +0.4
728,939 - Psyr_0640 0.50 -0.1
729,178 + Psyr_0640 0.87 -0.2
729,178 + Psyr_0640 0.87 +0.7
729,179 - Psyr_0640 0.87 -0.7
729,182 + Psyr_0640 0.88 +0.9
729,240 + +1.7
729,240 + +0.5
729,240 + +0.7
729,240 + +1.7
729,241 - +1.1
729,407 + Psyr_0641 0.17 +0.3
729,407 + Psyr_0641 0.17 -0.3
729,407 + Psyr_0641 0.17 -0.0
729,407 + Psyr_0641 0.17 -0.8
729,407 + Psyr_0641 0.17 -0.7
729,407 + Psyr_0641 0.17 +0.2
729,407 + Psyr_0641 0.17 +0.5
729,407 + Psyr_0641 0.17 +0.0
729,407 + Psyr_0641 0.17 +2.0
729,407 + Psyr_0641 0.17 -0.0
729,407 + Psyr_0641 0.17 -0.3
729,407 + Psyr_0641 0.17 -0.1
729,407 + Psyr_0641 0.17 -0.8
729,408 - Psyr_0641 0.17 -0.3
729,408 - Psyr_0641 0.17 -1.9
729,408 - Psyr_0641 0.17 +2.2
729,408 - Psyr_0641 0.17 +1.0
729,408 - Psyr_0641 0.17 -0.7
729,408 - Psyr_0641 0.17 -0.5
729,408 - Psyr_0641 0.17 -0.3
729,419 - Psyr_0641 0.19 +0.9
729,597 - Psyr_0641 0.42 +0.1
729,597 - Psyr_0641 0.42 -0.7
729,707 + Psyr_0641 0.57 +0.1
729,707 + Psyr_0641 0.57 -0.5
729,707 + Psyr_0641 0.57 +0.3
729,707 + Psyr_0641 0.57 -0.4
729,707 + Psyr_0641 0.57 +0.9
729,707 + Psyr_0641 0.57 +0.2
729,707 + Psyr_0641 0.57 -0.3
729,707 + Psyr_0641 0.57 -0.5
729,707 + Psyr_0641 0.57 +0.2
729,707 + Psyr_0641 0.57 -0.2
729,707 + Psyr_0641 0.57 +0.8
729,707 + Psyr_0641 0.57 -0.9
729,707 + Psyr_0641 0.57 +2.0
729,708 - Psyr_0641 0.57 -0.3
729,708 - Psyr_0641 0.57 -0.3
729,708 - Psyr_0641 0.57 -1.7
729,708 - Psyr_0641 0.57 +1.7
729,708 - Psyr_0641 0.57 +0.7
729,708 - Psyr_0641 0.57 -0.9
729,708 - Psyr_0641 0.57 -1.1
729,708 - Psyr_0641 0.57 -0.7
729,708 - Psyr_0641 0.57 +0.4
729,708 - Psyr_0641 0.57 -0.9
729,896 - Psyr_0641 0.82 +0.2
729,943 + Psyr_0641 0.88 +0.0
729,977 + +0.1
729,977 + -0.1
729,978 - +1.2
729,978 - -0.4
730,117 + Psyr_0642 0.30 +0.3
730,117 + Psyr_0642 0.30 +0.8
730,206 + Psyr_0642 0.59 -0.9
730,206 + Psyr_0642 0.59 +0.1
730,206 + Psyr_0642 0.59 +0.2
730,207 - Psyr_0642 0.59 +1.5

Or see this region's nucleotide sequence