Experiment: MoLS4 without vitamins with Casaminos 0.2%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2415 and DVU2416 are separated by 329 nucleotides DVU2416 and DVU2417 overlap by 4 nucleotides DVU2417 and DVU2418 are separated by 435 nucleotides
DVU2415: DVU2415 - hypothetical protein (TIGR), at 2,522,944 to 2,524,371
DVU2415
DVU2416: DVU2416 - conserved hypothetical protein (TIGR), at 2,524,701 to 2,525,183
DVU2416
DVU2417: DVU2417 - SlyX protein (TIGR), at 2,525,180 to 2,525,401
DVU2417
DVU2418: DVU2418 - vanZ-like family protein (TIGR), at 2,525,837 to 2,526,259
DVU2418
Position (kb)
2525
2526 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2524.189 kb on + strand, within DVU2415 at 2524.189 kb on + strand, within DVU2415 at 2524.237 kb on - strand at 2524.262 kb on - strand at 2524.268 kb on + strand at 2524.278 kb on + strand at 2524.410 kb on - strand at 2524.419 kb on - strand at 2524.437 kb on + strand at 2524.457 kb on + strand at 2524.488 kb on - strand at 2524.507 kb on + strand at 2524.533 kb on - strand at 2524.540 kb on - strand at 2524.550 kb on + strand at 2524.550 kb on + strand at 2524.626 kb on - strand at 2524.762 kb on + strand, within DVU2416 at 2524.791 kb on - strand, within DVU2416 at 2524.829 kb on + strand, within DVU2416 at 2524.837 kb on - strand, within DVU2416 at 2524.837 kb on - strand, within DVU2416 at 2524.957 kb on - strand, within DVU2416 at 2524.960 kb on + strand, within DVU2416 at 2524.985 kb on + strand, within DVU2416 at 2525.007 kb on + strand, within DVU2416 at 2525.033 kb on - strand, within DVU2416 at 2525.033 kb on - strand, within DVU2416 at 2525.033 kb on - strand, within DVU2416 at 2525.076 kb on - strand, within DVU2416 at 2525.263 kb on + strand, within DVU2417 at 2525.332 kb on + strand, within DVU2417 at 2525.345 kb on - strand, within DVU2417 at 2525.539 kb on + strand at 2525.566 kb on + strand at 2525.570 kb on + strand at 2525.573 kb on - strand at 2525.589 kb on + strand at 2525.621 kb on + strand at 2525.621 kb on + strand at 2525.623 kb on + strand at 2525.633 kb on + strand at 2525.695 kb on + strand at 2525.804 kb on - strand at 2525.816 kb on + strand at 2525.896 kb on - strand, within DVU2418 at 2525.912 kb on + strand, within DVU2418 at 2526.122 kb on - strand, within DVU2418 at 2526.124 kb on + strand, within DVU2418 at 2526.201 kb on - strand, within DVU2418 at 2526.228 kb on + strand at 2526.390 kb on + strand at 2526.390 kb on + strand at 2526.390 kb on + strand at 2526.390 kb on + strand at 2526.390 kb on + strand at 2526.398 kb on - strand at 2526.398 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without vitamins with Casaminos 0.2% remove 2,524,189 + DVU2415 0.87 -0.6 2,524,189 + DVU2415 0.87 -1.1 2,524,237 - -0.2 2,524,262 - -0.6 2,524,268 + +0.0 2,524,278 + +1.0 2,524,410 - -1.1 2,524,419 - -1.0 2,524,437 + +0.9 2,524,457 + +0.2 2,524,488 - -0.1 2,524,507 + -1.0 2,524,533 - +0.0 2,524,540 - -0.1 2,524,550 + +0.6 2,524,550 + +0.7 2,524,626 - -0.3 2,524,762 + DVU2416 0.13 -0.4 2,524,791 - DVU2416 0.19 +0.4 2,524,829 + DVU2416 0.27 +0.1 2,524,837 - DVU2416 0.28 +0.4 2,524,837 - DVU2416 0.28 -0.7 2,524,957 - DVU2416 0.53 +0.5 2,524,960 + DVU2416 0.54 -0.2 2,524,985 + DVU2416 0.59 -0.0 2,525,007 + DVU2416 0.63 -0.5 2,525,033 - DVU2416 0.69 -0.1 2,525,033 - DVU2416 0.69 -0.2 2,525,033 - DVU2416 0.69 -1.5 2,525,076 - DVU2416 0.78 -0.8 2,525,263 + DVU2417 0.37 -0.3 2,525,332 + DVU2417 0.68 -0.0 2,525,345 - DVU2417 0.74 +2.8 2,525,539 + +0.4 2,525,566 + +0.8 2,525,570 + -0.3 2,525,573 - -2.5 2,525,589 + +0.1 2,525,621 + +0.6 2,525,621 + +0.1 2,525,623 + +0.1 2,525,633 + +0.3 2,525,695 + +1.8 2,525,804 - -0.9 2,525,816 + -0.1 2,525,896 - DVU2418 0.14 -0.3 2,525,912 + DVU2418 0.18 -0.3 2,526,122 - DVU2418 0.67 -0.4 2,526,124 + DVU2418 0.68 +0.7 2,526,201 - DVU2418 0.86 -1.2 2,526,228 + -0.1 2,526,390 + +0.2 2,526,390 + +1.8 2,526,390 + -0.7 2,526,390 + -1.7 2,526,390 + -2.6 2,526,398 - +0.0 2,526,398 - +0.2
Or see this region's nucleotide sequence