Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DORF702

Experiment: MoLS4 without vitamins with Casaminos 0.2%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVUA0086 and DORF702 overlap by 4 nucleotidesDORF702 and DVUA0087 overlap by 4 nucleotides DVUA0086: DVUA0086 - response regulator (TIGR), at 114,998 to 116,089 DVUA0086 DORF702: DORF702 - no description, at 116,086 to 116,478 DORF702 DVUA0087: DVUA0087 - sensory box histidine kinase (TIGR), at 116,475 to 119,588 DVUA0087 Position (kb) 116 117Strain fitness (log2 ratio) -2 -1 0 1at 115.114 kb on + strand, within DVUA0086at 115.136 kb on + strand, within DVUA0086at 115.227 kb on + strand, within DVUA0086at 115.227 kb on - strand, within DVUA0086at 115.437 kb on + strand, within DVUA0086at 115.438 kb on + strand, within DVUA0086at 115.445 kb on - strand, within DVUA0086at 115.450 kb on + strand, within DVUA0086at 115.472 kb on - strand, within DVUA0086at 115.524 kb on - strand, within DVUA0086at 115.662 kb on + strand, within DVUA0086at 115.736 kb on - strand, within DVUA0086at 115.747 kb on + strand, within DVUA0086at 115.750 kb on - strand, within DVUA0086at 115.910 kb on + strand, within DVUA0086at 115.911 kb on + strand, within DVUA0086at 115.919 kb on - strand, within DVUA0086at 115.919 kb on - strand, within DVUA0086at 115.984 kb on + strandat 116.207 kb on - strand, within DORF702at 116.326 kb on - strand, within DORF702at 116.486 kb on + strandat 116.499 kb on - strandat 116.543 kb on + strandat 116.543 kb on + strandat 116.603 kb on + strandat 116.614 kb on + strandat 116.750 kb on - strandat 116.811 kb on + strand, within DVUA0087at 116.818 kb on + strand, within DVUA0087at 117.026 kb on + strand, within DVUA0087at 117.069 kb on + strand, within DVUA0087at 117.136 kb on + strand, within DVUA0087at 117.181 kb on - strand, within DVUA0087at 117.346 kb on + strand, within DVUA0087at 117.351 kb on + strand, within DVUA0087at 117.376 kb on - strand, within DVUA0087at 117.378 kb on + strand, within DVUA0087at 117.378 kb on + strand, within DVUA0087at 117.378 kb on + strand, within DVUA0087at 117.381 kb on - strand, within DVUA0087at 117.386 kb on - strand, within DVUA0087at 117.386 kb on - strand, within DVUA0087

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 without vitamins with Casaminos 0.2%
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115,114 + DVUA0086 0.11 -1.0
115,136 + DVUA0086 0.13 -0.1
115,227 + DVUA0086 0.21 -0.2
115,227 - DVUA0086 0.21 +0.1
115,437 + DVUA0086 0.40 -0.2
115,438 + DVUA0086 0.40 -0.9
115,445 - DVUA0086 0.41 -0.8
115,450 + DVUA0086 0.41 +0.5
115,472 - DVUA0086 0.43 -1.4
115,524 - DVUA0086 0.48 -0.1
115,662 + DVUA0086 0.61 +0.2
115,736 - DVUA0086 0.68 -1.3
115,747 + DVUA0086 0.69 -1.0
115,750 - DVUA0086 0.69 -0.0
115,910 + DVUA0086 0.84 -0.4
115,911 + DVUA0086 0.84 -1.2
115,919 - DVUA0086 0.84 -0.3
115,919 - DVUA0086 0.84 +0.1
115,984 + -0.4
116,207 - DORF702 0.31 +1.1
116,326 - DORF702 0.61 +0.2
116,486 + -0.8
116,499 - -0.6
116,543 + +1.1
116,543 + -0.2
116,603 + -0.2
116,614 + -0.0
116,750 - -0.4
116,811 + DVUA0087 0.11 -1.2
116,818 + DVUA0087 0.11 -2.2
117,026 + DVUA0087 0.18 -0.3
117,069 + DVUA0087 0.19 -2.2
117,136 + DVUA0087 0.21 -1.2
117,181 - DVUA0087 0.23 -1.1
117,346 + DVUA0087 0.28 +0.0
117,351 + DVUA0087 0.28 -2.3
117,376 - DVUA0087 0.29 +0.2
117,378 + DVUA0087 0.29 -0.2
117,378 + DVUA0087 0.29 +0.2
117,378 + DVUA0087 0.29 -0.2
117,381 - DVUA0087 0.29 +0.0
117,386 - DVUA0087 0.29 -0.6
117,386 - DVUA0087 0.29 +0.6

Or see this region's nucleotide sequence