Strain Fitness in Escherichia coli BL21 around ECD_01295

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01293 and ECD_01294 overlap by 4 nucleotidesECD_01294 and ECD_01295 are separated by 13 nucleotidesECD_01295 and ECD_01296 are separated by 44 nucleotides ECD_01293: ECD_01293 - putative family 65 glycosyl hydrolase, at 1,364,250 to 1,366,517 _01293 ECD_01294: ECD_01294 - beta-phosphoglucomutase, at 1,366,514 to 1,367,173 _01294 ECD_01295: ECD_01295 - putative sugar transport protein, at 1,367,187 to 1,368,269 _01295 ECD_01296: ECD_01296 - outer membrane porin G, at 1,368,314 to 1,369,219 _01296 Position (kb) 1367 1368 1369Strain fitness (log2 ratio) -1 0 1 2 3at 1366.428 kb on - strandat 1366.551 kb on + strandat 1366.712 kb on - strand, within ECD_01294at 1367.169 kb on + strandat 1367.172 kb on - strandat 1367.834 kb on - strand, within ECD_01295at 1367.834 kb on - strand, within ECD_01295at 1368.175 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
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1,366,428 - -0.2
1,366,551 + +0.4
1,366,712 - ECD_01294 0.30 +1.8
1,367,169 + +0.6
1,367,172 - +1.4
1,367,834 - ECD_01295 0.60 +0.5
1,367,834 - ECD_01295 0.60 +1.0
1,368,175 + +3.1

Or see this region's nucleotide sequence