Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3219

Experiment: Chlorite 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3217 and Ga0059261_3218 are separated by 9 nucleotidesGa0059261_3218 and Ga0059261_3219 are separated by 216 nucleotidesGa0059261_3219 and Ga0059261_3220 are separated by 14 nucleotides Ga0059261_3217: Ga0059261_3217 - coproporphyrinogen oxidase (EC 1.3.3.3), at 3,349,345 to 3,350,196 _3217 Ga0059261_3218: Ga0059261_3218 - Predicted rRNA methylase (SpoU class), at 3,350,206 to 3,350,670 _3218 Ga0059261_3219: Ga0059261_3219 - ubiquinol-cytochrome c reductase, iron-sulfur subunit, at 3,350,887 to 3,351,459 _3219 Ga0059261_3220: Ga0059261_3220 - Cytochrome b subunit of the bc complex, at 3,351,474 to 3,352,763 _3220 Position (kb) 3350 3351 3352Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3350.221 kb on - strandat 3350.221 kb on - strandat 3350.520 kb on + strand, within Ga0059261_3218at 3350.521 kb on - strand, within Ga0059261_3218at 3350.521 kb on - strand, within Ga0059261_3218at 3350.521 kb on - strand, within Ga0059261_3218at 3350.521 kb on - strand, within Ga0059261_3218at 3350.521 kb on - strand, within Ga0059261_3218at 3350.521 kb on - strand, within Ga0059261_3218at 3350.522 kb on + strand, within Ga0059261_3218at 3350.522 kb on + strand, within Ga0059261_3218at 3350.522 kb on + strand, within Ga0059261_3218at 3350.522 kb on + strand, within Ga0059261_3218at 3350.522 kb on + strand, within Ga0059261_3218at 3350.522 kb on + strand, within Ga0059261_3218at 3350.522 kb on + strand, within Ga0059261_3218at 3350.522 kb on + strand, within Ga0059261_3218at 3350.522 kb on + strandat 3350.522 kb on + strand, within Ga0059261_3218at 3350.522 kb on + strand, within Ga0059261_3218at 3350.522 kb on + strand, within Ga0059261_3218at 3350.523 kb on - strand, within Ga0059261_3218at 3350.523 kb on - strand, within Ga0059261_3218at 3350.523 kb on - strand, within Ga0059261_3218at 3350.523 kb on - strand, within Ga0059261_3218at 3350.523 kb on - strand, within Ga0059261_3218at 3350.523 kb on - strand, within Ga0059261_3218at 3350.523 kb on - strand, within Ga0059261_3218at 3350.523 kb on - strand, within Ga0059261_3218at 3350.523 kb on - strand, within Ga0059261_3218at 3350.523 kb on - strand, within Ga0059261_3218at 3350.523 kb on - strand, within Ga0059261_3218at 3350.523 kb on - strand, within Ga0059261_3218at 3350.523 kb on - strandat 3350.530 kb on - strand, within Ga0059261_3218at 3350.530 kb on - strand, within Ga0059261_3218at 3350.682 kb on + strandat 3350.683 kb on - strandat 3350.760 kb on + strandat 3350.760 kb on + strandat 3350.760 kb on + strandat 3350.761 kb on - strandat 3350.761 kb on - strandat 3350.761 kb on - strandat 3350.805 kb on - strandat 3350.959 kb on + strand, within Ga0059261_3219at 3350.960 kb on - strand, within Ga0059261_3219at 3351.334 kb on + strand, within Ga0059261_3219at 3351.335 kb on - strand, within Ga0059261_3219at 3351.335 kb on - strand, within Ga0059261_3219at 3351.361 kb on + strand, within Ga0059261_3219at 3351.361 kb on + strand, within Ga0059261_3219at 3351.361 kb on + strand, within Ga0059261_3219at 3351.362 kb on - strand, within Ga0059261_3219at 3351.362 kb on - strand, within Ga0059261_3219at 3351.421 kb on + strandat 3351.421 kb on + strandat 3351.468 kb on + strandat 3351.469 kb on - strandat 3351.469 kb on - strandat 3351.498 kb on + strandat 3351.498 kb on + strandat 3351.498 kb on + strandat 3351.499 kb on - strandat 3351.499 kb on - strandat 3351.561 kb on + strandat 3351.562 kb on - strandat 3351.564 kb on - strandat 3351.564 kb on - strandat 3351.606 kb on + strand, within Ga0059261_3220at 3351.606 kb on + strand, within Ga0059261_3220at 3351.606 kb on + strand, within Ga0059261_3220at 3351.607 kb on - strand, within Ga0059261_3220at 3351.607 kb on - strand, within Ga0059261_3220at 3351.607 kb on - strand, within Ga0059261_3220at 3351.625 kb on + strand, within Ga0059261_3220at 3351.684 kb on + strand, within Ga0059261_3220at 3351.684 kb on + strand, within Ga0059261_3220at 3351.685 kb on - strand, within Ga0059261_3220at 3351.685 kb on - strand, within Ga0059261_3220at 3351.804 kb on + strand, within Ga0059261_3220at 3351.804 kb on + strand, within Ga0059261_3220at 3351.804 kb on + strand, within Ga0059261_3220at 3351.804 kb on + strand, within Ga0059261_3220at 3351.804 kb on + strand, within Ga0059261_3220at 3351.804 kb on + strand, within Ga0059261_3220at 3351.804 kb on + strand, within Ga0059261_3220at 3351.804 kb on + strand, within Ga0059261_3220at 3351.804 kb on + strand, within Ga0059261_3220at 3351.805 kb on - strand, within Ga0059261_3220at 3351.805 kb on - strand, within Ga0059261_3220at 3351.805 kb on - strand, within Ga0059261_3220at 3351.805 kb on - strand, within Ga0059261_3220at 3351.805 kb on - strand, within Ga0059261_3220at 3351.805 kb on - strand, within Ga0059261_3220at 3351.805 kb on - strand, within Ga0059261_3220at 3351.805 kb on - strand, within Ga0059261_3220at 3351.806 kb on + strand, within Ga0059261_3220at 3351.806 kb on + strand, within Ga0059261_3220at 3351.806 kb on + strand, within Ga0059261_3220at 3351.806 kb on + strand, within Ga0059261_3220at 3351.807 kb on - strand, within Ga0059261_3220at 3351.809 kb on - strand, within Ga0059261_3220at 3351.813 kb on - strand, within Ga0059261_3220at 3351.840 kb on + strand, within Ga0059261_3220at 3351.840 kb on + strand, within Ga0059261_3220at 3351.840 kb on + strand, within Ga0059261_3220at 3351.841 kb on - strand, within Ga0059261_3220at 3351.841 kb on - strand, within Ga0059261_3220at 3351.841 kb on - strand, within Ga0059261_3220at 3351.841 kb on - strand, within Ga0059261_3220at 3351.841 kb on - strand, within Ga0059261_3220at 3351.841 kb on - strand, within Ga0059261_3220at 3351.841 kb on - strand, within Ga0059261_3220at 3351.918 kb on + strand, within Ga0059261_3220at 3351.918 kb on + strand, within Ga0059261_3220at 3351.918 kb on + strand, within Ga0059261_3220at 3351.918 kb on + strand, within Ga0059261_3220at 3351.918 kb on + strand, within Ga0059261_3220at 3351.918 kb on + strand, within Ga0059261_3220at 3351.918 kb on + strand, within Ga0059261_3220at 3351.918 kb on + strand, within Ga0059261_3220at 3351.918 kb on + strand, within Ga0059261_3220at 3351.919 kb on - strand, within Ga0059261_3220at 3351.919 kb on - strand, within Ga0059261_3220at 3351.919 kb on - strand, within Ga0059261_3220at 3352.074 kb on + strand, within Ga0059261_3220at 3352.074 kb on + strand, within Ga0059261_3220at 3352.074 kb on + strand, within Ga0059261_3220at 3352.074 kb on + strand, within Ga0059261_3220at 3352.074 kb on + strandat 3352.200 kb on + strand, within Ga0059261_3220at 3352.201 kb on - strand, within Ga0059261_3220at 3352.201 kb on - strand, within Ga0059261_3220at 3352.203 kb on + strand, within Ga0059261_3220at 3352.203 kb on + strand, within Ga0059261_3220at 3352.203 kb on + strand, within Ga0059261_3220at 3352.203 kb on + strand, within Ga0059261_3220at 3352.203 kb on + strand, within Ga0059261_3220at 3352.203 kb on + strand, within Ga0059261_3220at 3352.203 kb on + strand, within Ga0059261_3220at 3352.203 kb on + strand, within Ga0059261_3220at 3352.203 kb on + strand, within Ga0059261_3220at 3352.204 kb on - strand, within Ga0059261_3220at 3352.204 kb on - strand, within Ga0059261_3220at 3352.204 kb on - strand, within Ga0059261_3220at 3352.204 kb on - strand, within Ga0059261_3220at 3352.204 kb on - strand, within Ga0059261_3220at 3352.204 kb on - strand, within Ga0059261_3220at 3352.228 kb on + strand, within Ga0059261_3220at 3352.228 kb on + strand, within Ga0059261_3220at 3352.229 kb on - strand, within Ga0059261_3220at 3352.299 kb on + strand, within Ga0059261_3220at 3352.299 kb on + strand, within Ga0059261_3220at 3352.299 kb on + strand, within Ga0059261_3220at 3352.299 kb on + strand, within Ga0059261_3220at 3352.299 kb on + strandat 3352.299 kb on + strand, within Ga0059261_3220at 3352.299 kb on + strand, within Ga0059261_3220at 3352.299 kb on + strand, within Ga0059261_3220at 3352.299 kb on + strand, within Ga0059261_3220at 3352.300 kb on - strand, within Ga0059261_3220at 3352.300 kb on - strand, within Ga0059261_3220at 3352.300 kb on - strand, within Ga0059261_3220at 3352.300 kb on - strand, within Ga0059261_3220at 3352.300 kb on - strand, within Ga0059261_3220at 3352.300 kb on - strand, within Ga0059261_3220at 3352.334 kb on + strand, within Ga0059261_3220at 3352.334 kb on + strand, within Ga0059261_3220at 3352.334 kb on + strand, within Ga0059261_3220at 3352.334 kb on + strand, within Ga0059261_3220at 3352.334 kb on + strand, within Ga0059261_3220at 3352.335 kb on - strand, within Ga0059261_3220at 3352.335 kb on - strand, within Ga0059261_3220at 3352.335 kb on - strand, within Ga0059261_3220at 3352.350 kb on + strand, within Ga0059261_3220at 3352.350 kb on + strand, within Ga0059261_3220at 3352.350 kb on + strand, within Ga0059261_3220at 3352.365 kb on + strand, within Ga0059261_3220at 3352.365 kb on + strand, within Ga0059261_3220at 3352.365 kb on + strandat 3352.366 kb on - strand, within Ga0059261_3220at 3352.366 kb on - strand, within Ga0059261_3220

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 1.25 mM
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3,350,221 - +1.0
3,350,221 - +1.2
3,350,520 + Ga0059261_3218 0.68 -0.2
3,350,521 - Ga0059261_3218 0.68 +0.3
3,350,521 - Ga0059261_3218 0.68 -0.6
3,350,521 - Ga0059261_3218 0.68 -0.9
3,350,521 - Ga0059261_3218 0.68 -1.2
3,350,521 - Ga0059261_3218 0.68 -0.4
3,350,521 - Ga0059261_3218 0.68 -0.0
3,350,522 + Ga0059261_3218 0.68 -0.5
3,350,522 + Ga0059261_3218 0.68 -2.1
3,350,522 + Ga0059261_3218 0.68 -0.5
3,350,522 + Ga0059261_3218 0.68 +0.0
3,350,522 + Ga0059261_3218 0.68 -0.3
3,350,522 + Ga0059261_3218 0.68 +0.4
3,350,522 + Ga0059261_3218 0.68 -0.1
3,350,522 + Ga0059261_3218 0.68 -0.2
3,350,522 + +1.2
3,350,522 + Ga0059261_3218 0.68 +0.8
3,350,522 + Ga0059261_3218 0.68 -0.1
3,350,522 + Ga0059261_3218 0.68 -0.5
3,350,523 - Ga0059261_3218 0.68 +0.1
3,350,523 - Ga0059261_3218 0.68 -0.5
3,350,523 - Ga0059261_3218 0.68 +0.2
3,350,523 - Ga0059261_3218 0.68 +0.6
3,350,523 - Ga0059261_3218 0.68 -0.2
3,350,523 - Ga0059261_3218 0.68 -0.2
3,350,523 - Ga0059261_3218 0.68 -1.3
3,350,523 - Ga0059261_3218 0.68 -0.2
3,350,523 - Ga0059261_3218 0.68 -0.6
3,350,523 - Ga0059261_3218 0.68 -0.6
3,350,523 - Ga0059261_3218 0.68 +1.2
3,350,523 - Ga0059261_3218 0.68 -0.8
3,350,523 - +0.8
3,350,530 - Ga0059261_3218 0.70 -0.0
3,350,530 - Ga0059261_3218 0.70 -1.1
3,350,682 + +1.8
3,350,683 - -1.0
3,350,760 + -2.1
3,350,760 + +0.4
3,350,760 + -1.1
3,350,761 - +1.0
3,350,761 - -1.3
3,350,761 - -1.0
3,350,805 - +0.2
3,350,959 + Ga0059261_3219 0.13 +0.2
3,350,960 - Ga0059261_3219 0.13 -0.6
3,351,334 + Ga0059261_3219 0.78 -1.8
3,351,335 - Ga0059261_3219 0.78 -2.6
3,351,335 - Ga0059261_3219 0.78 +0.4
3,351,361 + Ga0059261_3219 0.83 -0.7
3,351,361 + Ga0059261_3219 0.83 -0.2
3,351,361 + Ga0059261_3219 0.83 -2.1
3,351,362 - Ga0059261_3219 0.83 -1.7
3,351,362 - Ga0059261_3219 0.83 -0.9
3,351,421 + -1.8
3,351,421 + -2.1
3,351,468 + -1.1
3,351,469 - -0.0
3,351,469 - -0.6
3,351,498 + -0.0
3,351,498 + +0.4
3,351,498 + +0.7
3,351,499 - +1.0
3,351,499 - -0.2
3,351,561 + +1.2
3,351,562 - +0.1
3,351,564 - +1.0
3,351,564 - +1.7
3,351,606 + Ga0059261_3220 0.10 -0.4
3,351,606 + Ga0059261_3220 0.10 -0.8
3,351,606 + Ga0059261_3220 0.10 +0.9
3,351,607 - Ga0059261_3220 0.10 +1.8
3,351,607 - Ga0059261_3220 0.10 +0.2
3,351,607 - Ga0059261_3220 0.10 +0.1
3,351,625 + Ga0059261_3220 0.12 +0.7
3,351,684 + Ga0059261_3220 0.16 +1.0
3,351,684 + Ga0059261_3220 0.16 +2.2
3,351,685 - Ga0059261_3220 0.16 +1.0
3,351,685 - Ga0059261_3220 0.16 -0.1
3,351,804 + Ga0059261_3220 0.26 -0.6
3,351,804 + Ga0059261_3220 0.26 -0.7
3,351,804 + Ga0059261_3220 0.26 +0.1
3,351,804 + Ga0059261_3220 0.26 +1.6
3,351,804 + Ga0059261_3220 0.26 +0.8
3,351,804 + Ga0059261_3220 0.26 +0.6
3,351,804 + Ga0059261_3220 0.26 +0.1
3,351,804 + Ga0059261_3220 0.26 -0.8
3,351,804 + Ga0059261_3220 0.26 -0.9
3,351,805 - Ga0059261_3220 0.26 +1.1
3,351,805 - Ga0059261_3220 0.26 -0.3
3,351,805 - Ga0059261_3220 0.26 +0.0
3,351,805 - Ga0059261_3220 0.26 +1.7
3,351,805 - Ga0059261_3220 0.26 +0.1
3,351,805 - Ga0059261_3220 0.26 -1.3
3,351,805 - Ga0059261_3220 0.26 +0.4
3,351,805 - Ga0059261_3220 0.26 -0.1
3,351,806 + Ga0059261_3220 0.26 -0.1
3,351,806 + Ga0059261_3220 0.26 +2.2
3,351,806 + Ga0059261_3220 0.26 +0.4
3,351,806 + Ga0059261_3220 0.26 +0.5
3,351,807 - Ga0059261_3220 0.26 -0.3
3,351,809 - Ga0059261_3220 0.26 -0.5
3,351,813 - Ga0059261_3220 0.26 -1.1
3,351,840 + Ga0059261_3220 0.28 +0.0
3,351,840 + Ga0059261_3220 0.28 +0.7
3,351,840 + Ga0059261_3220 0.28 +0.1
3,351,841 - Ga0059261_3220 0.28 +1.1
3,351,841 - Ga0059261_3220 0.28 -0.8
3,351,841 - Ga0059261_3220 0.28 +1.0
3,351,841 - Ga0059261_3220 0.28 +0.0
3,351,841 - Ga0059261_3220 0.28 -0.8
3,351,841 - Ga0059261_3220 0.28 +0.6
3,351,841 - Ga0059261_3220 0.28 -0.6
3,351,918 + Ga0059261_3220 0.34 +0.2
3,351,918 + Ga0059261_3220 0.34 -0.8
3,351,918 + Ga0059261_3220 0.34 -1.1
3,351,918 + Ga0059261_3220 0.34 +0.9
3,351,918 + Ga0059261_3220 0.34 -0.7
3,351,918 + Ga0059261_3220 0.34 -0.2
3,351,918 + Ga0059261_3220 0.34 +1.2
3,351,918 + Ga0059261_3220 0.34 -0.3
3,351,918 + Ga0059261_3220 0.34 +0.2
3,351,919 - Ga0059261_3220 0.34 -0.2
3,351,919 - Ga0059261_3220 0.34 -0.8
3,351,919 - Ga0059261_3220 0.34 -0.3
3,352,074 + Ga0059261_3220 0.47 -0.2
3,352,074 + Ga0059261_3220 0.47 +0.3
3,352,074 + Ga0059261_3220 0.47 +1.5
3,352,074 + Ga0059261_3220 0.47 +0.6
3,352,074 + +1.2
3,352,200 + Ga0059261_3220 0.56 +0.1
3,352,201 - Ga0059261_3220 0.56 -0.1
3,352,201 - Ga0059261_3220 0.56 +0.1
3,352,203 + Ga0059261_3220 0.57 -0.2
3,352,203 + Ga0059261_3220 0.57 -0.6
3,352,203 + Ga0059261_3220 0.57 -0.7
3,352,203 + Ga0059261_3220 0.57 +1.2
3,352,203 + Ga0059261_3220 0.57 +0.1
3,352,203 + Ga0059261_3220 0.57 +0.7
3,352,203 + Ga0059261_3220 0.57 -0.1
3,352,203 + Ga0059261_3220 0.57 +1.5
3,352,203 + Ga0059261_3220 0.57 -1.6
3,352,204 - Ga0059261_3220 0.57 -1.9
3,352,204 - Ga0059261_3220 0.57 -0.2
3,352,204 - Ga0059261_3220 0.57 -1.2
3,352,204 - Ga0059261_3220 0.57 +0.7
3,352,204 - Ga0059261_3220 0.57 -1.6
3,352,204 - Ga0059261_3220 0.57 -0.3
3,352,228 + Ga0059261_3220 0.58 -0.0
3,352,228 + Ga0059261_3220 0.58 +0.1
3,352,229 - Ga0059261_3220 0.59 +3.0
3,352,299 + Ga0059261_3220 0.64 -0.6
3,352,299 + Ga0059261_3220 0.64 +0.2
3,352,299 + Ga0059261_3220 0.64 -0.5
3,352,299 + Ga0059261_3220 0.64 +0.8
3,352,299 + +1.2
3,352,299 + Ga0059261_3220 0.64 -1.0
3,352,299 + Ga0059261_3220 0.64 -0.2
3,352,299 + Ga0059261_3220 0.64 -0.9
3,352,299 + Ga0059261_3220 0.64 -0.2
3,352,300 - Ga0059261_3220 0.64 +0.2
3,352,300 - Ga0059261_3220 0.64 -0.5
3,352,300 - Ga0059261_3220 0.64 +0.6
3,352,300 - Ga0059261_3220 0.64 +0.0
3,352,300 - Ga0059261_3220 0.64 +0.2
3,352,300 - Ga0059261_3220 0.64 +0.2
3,352,334 + Ga0059261_3220 0.67 +0.7
3,352,334 + Ga0059261_3220 0.67 -0.1
3,352,334 + Ga0059261_3220 0.67 -0.8
3,352,334 + Ga0059261_3220 0.67 -0.8
3,352,334 + Ga0059261_3220 0.67 +0.5
3,352,335 - Ga0059261_3220 0.67 +0.0
3,352,335 - Ga0059261_3220 0.67 -0.0
3,352,335 - Ga0059261_3220 0.67 -0.1
3,352,350 + Ga0059261_3220 0.68 -0.2
3,352,350 + Ga0059261_3220 0.68 -0.6
3,352,350 + Ga0059261_3220 0.68 -0.1
3,352,365 + Ga0059261_3220 0.69 +0.8
3,352,365 + Ga0059261_3220 0.69 +0.2
3,352,365 + +0.2
3,352,366 - Ga0059261_3220 0.69 -0.8
3,352,366 - Ga0059261_3220 0.69 -0.2

Or see this region's nucleotide sequence