Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1453

Experiment: Chlorite 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1452 and Ga0059261_1453 overlap by 4 nucleotidesGa0059261_1453 and Ga0059261_1454 are separated by 228 nucleotides Ga0059261_1452: Ga0059261_1452 - ferrochelatase (EC 4.99.1.1), at 1,529,480 to 1,530,481 _1452 Ga0059261_1453: Ga0059261_1453 - Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs, at 1,530,478 to 1,532,700 _1453 Ga0059261_1454: Ga0059261_1454 - prolipoprotein diacylglyceryl transferase, at 1,532,929 to 1,533,825 _1454 Position (kb) 1530 1531 1532 1533Strain fitness (log2 ratio) -3 -2 -1 0 1at 1529.482 kb on - strandat 1530.511 kb on + strandat 1530.511 kb on + strandat 1530.512 kb on - strandat 1530.512 kb on - strandat 1530.533 kb on + strandat 1530.533 kb on + strandat 1530.533 kb on + strandat 1530.533 kb on + strandat 1530.534 kb on - strandat 1530.534 kb on - strandat 1530.534 kb on - strandat 1530.868 kb on - strand, within Ga0059261_1453at 1530.870 kb on - strand, within Ga0059261_1453at 1530.870 kb on - strand, within Ga0059261_1453at 1530.870 kb on - strand, within Ga0059261_1453at 1530.870 kb on - strand, within Ga0059261_1453at 1530.870 kb on - strand, within Ga0059261_1453at 1530.870 kb on - strand, within Ga0059261_1453at 1530.870 kb on - strand, within Ga0059261_1453at 1530.870 kb on - strand, within Ga0059261_1453at 1530.870 kb on - strand, within Ga0059261_1453at 1530.870 kb on - strand, within Ga0059261_1453at 1530.870 kb on - strand, within Ga0059261_1453at 1530.870 kb on - strand, within Ga0059261_1453at 1531.071 kb on - strand, within Ga0059261_1453at 1531.071 kb on - strand, within Ga0059261_1453at 1531.071 kb on - strand, within Ga0059261_1453at 1531.071 kb on - strand, within Ga0059261_1453at 1531.071 kb on - strand, within Ga0059261_1453at 1531.075 kb on - strand, within Ga0059261_1453at 1531.075 kb on - strand, within Ga0059261_1453at 1531.075 kb on - strand, within Ga0059261_1453at 1531.075 kb on - strand, within Ga0059261_1453at 1531.075 kb on - strand, within Ga0059261_1453at 1531.075 kb on - strand, within Ga0059261_1453at 1531.075 kb on - strand, within Ga0059261_1453at 1531.656 kb on - strand, within Ga0059261_1453at 1531.656 kb on - strand, within Ga0059261_1453at 1531.990 kb on - strand, within Ga0059261_1453at 1532.356 kb on + strand, within Ga0059261_1453at 1532.357 kb on - strand, within Ga0059261_1453at 1532.357 kb on - strand, within Ga0059261_1453at 1532.357 kb on - strand, within Ga0059261_1453at 1532.396 kb on + strand, within Ga0059261_1453at 1532.397 kb on - strand, within Ga0059261_1453at 1532.397 kb on - strand, within Ga0059261_1453at 1532.397 kb on - strand, within Ga0059261_1453at 1532.499 kb on - strandat 1532.601 kb on - strandat 1532.601 kb on - strandat 1532.601 kb on - strandat 1532.601 kb on - strandat 1532.601 kb on - strandat 1532.629 kb on + strandat 1532.629 kb on + strandat 1532.629 kb on + strandat 1532.630 kb on - strandat 1532.630 kb on - strandat 1532.630 kb on - strandat 1532.630 kb on - strandat 1532.630 kb on - strandat 1532.713 kb on - strandat 1532.809 kb on - strandat 1532.809 kb on - strandat 1532.809 kb on - strandat 1532.809 kb on - strandat 1532.809 kb on - strandat 1532.809 kb on - strandat 1532.809 kb on - strandat 1532.809 kb on - strandat 1532.887 kb on + strandat 1532.887 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 1.25 mM
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1,529,482 - -0.9
1,530,511 + -0.7
1,530,511 + -0.7
1,530,512 - -1.3
1,530,512 - -2.6
1,530,533 + -0.3
1,530,533 + -1.6
1,530,533 + -2.7
1,530,533 + -0.0
1,530,534 - -0.9
1,530,534 - -1.6
1,530,534 - -1.1
1,530,868 - Ga0059261_1453 0.18 -2.5
1,530,870 - Ga0059261_1453 0.18 -0.5
1,530,870 - Ga0059261_1453 0.18 -0.3
1,530,870 - Ga0059261_1453 0.18 -0.5
1,530,870 - Ga0059261_1453 0.18 -0.7
1,530,870 - Ga0059261_1453 0.18 -0.9
1,530,870 - Ga0059261_1453 0.18 +0.0
1,530,870 - Ga0059261_1453 0.18 -0.6
1,530,870 - Ga0059261_1453 0.18 -1.5
1,530,870 - Ga0059261_1453 0.18 -0.0
1,530,870 - Ga0059261_1453 0.18 -2.0
1,530,870 - Ga0059261_1453 0.18 -0.8
1,530,870 - Ga0059261_1453 0.18 -1.1
1,531,071 - Ga0059261_1453 0.27 -0.9
1,531,071 - Ga0059261_1453 0.27 +1.3
1,531,071 - Ga0059261_1453 0.27 -1.9
1,531,071 - Ga0059261_1453 0.27 -0.7
1,531,071 - Ga0059261_1453 0.27 -0.6
1,531,075 - Ga0059261_1453 0.27 -1.7
1,531,075 - Ga0059261_1453 0.27 -0.8
1,531,075 - Ga0059261_1453 0.27 -2.0
1,531,075 - Ga0059261_1453 0.27 -0.5
1,531,075 - Ga0059261_1453 0.27 -0.1
1,531,075 - Ga0059261_1453 0.27 -0.6
1,531,075 - Ga0059261_1453 0.27 -1.1
1,531,656 - Ga0059261_1453 0.53 -1.0
1,531,656 - Ga0059261_1453 0.53 +0.1
1,531,990 - Ga0059261_1453 0.68 -2.5
1,532,356 + Ga0059261_1453 0.84 -1.4
1,532,357 - Ga0059261_1453 0.85 +0.5
1,532,357 - Ga0059261_1453 0.85 -0.3
1,532,357 - Ga0059261_1453 0.85 -1.7
1,532,396 + Ga0059261_1453 0.86 +0.7
1,532,397 - Ga0059261_1453 0.86 -1.2
1,532,397 - Ga0059261_1453 0.86 -0.6
1,532,397 - Ga0059261_1453 0.86 -0.9
1,532,499 - -1.4
1,532,601 - -0.5
1,532,601 - -0.4
1,532,601 - -1.0
1,532,601 - -2.1
1,532,601 - -0.5
1,532,629 + -2.2
1,532,629 + -3.4
1,532,629 + -1.0
1,532,630 - -2.4
1,532,630 - -1.9
1,532,630 - -1.8
1,532,630 - -0.2
1,532,630 - +0.0
1,532,713 - -1.0
1,532,809 - -0.2
1,532,809 - +0.6
1,532,809 - -0.3
1,532,809 - -0.7
1,532,809 - -0.5
1,532,809 - -0.4
1,532,809 - -0.3
1,532,809 - -0.6
1,532,887 + +0.1
1,532,887 + -0.6

Or see this region's nucleotide sequence