Strain Fitness in Pseudomonas putida KT2440 around PP_4664

Experiment: pinene 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pinene 10 vol%
5,289,506	+		PP_4662	0.79	-0.9
5,289,507	-		PP_4662	0.79	+0.7
5,289,507	-		PP_4662	0.79	-0.2
5,289,507	-		PP_4662	0.79	+0.1
5,289,748	-		PP_4663	0.24	-0.6
5,289,774	-		PP_4663	0.28	-0.6
5,289,833	-		PP_4663	0.36	-0.1
5,289,930	+		PP_4663	0.48	+0.6
5,289,930	+		PP_4663	0.48	-0.1
5,289,931	-		PP_4663	0.48	-0.3
5,289,958	+		PP_4663	0.52	+0.5
5,289,958	+		PP_4663	0.52	-1.0
5,289,959	-		PP_4663	0.52	-1.0
5,289,959	-		PP_4663	0.52	-0.2
5,289,959	-		PP_4663	0.52	-1.0
5,289,968	-		PP_4663	0.53	-0.1
5,290,266	+				+0.7
5,290,266	+				-0.2
5,290,266	+				+0.3
5,290,266	+				-0.5
5,290,266	+				+1.4
5,290,303	+				-1.0
5,290,304	-				-0.1
5,290,304	-				-0.2
5,290,368	+				+0.3
5,290,368	+				-0.4
5,290,369	-				+0.1
5,290,370	+				+0.5
5,290,370	+				+0.1
5,290,371	-				-1.0
5,290,573	-		PP_4664	0.19	+0.0
5,290,621	-		PP_4664	0.25	+0.2
5,290,721	+		PP_4664	0.36	-1.0
5,290,722	-		PP_4664	0.36	+1.0
5,290,745	+		PP_4664	0.39	-0.4
5,290,745	+		PP_4664	0.39	-0.0
5,290,745	+		PP_4664	0.39	-1.2
5,290,745	+		PP_4664	0.39	+0.1
5,290,746	-		PP_4664	0.39	+0.9
5,290,746	-		PP_4664	0.39	+0.6
5,290,746	-		PP_4664	0.39	-0.0
5,290,816	+		PP_4664	0.47	-0.3
5,290,816	+		PP_4664	0.47	+0.8
5,290,816	+		PP_4664	0.47	+0.8
5,290,979	+		PP_4664	0.65	+0.4
5,290,979	+		PP_4664	0.65	+0.2
5,290,979	+		PP_4664	0.65	+0.3
5,290,980	-		PP_4664	0.65	-1.0
5,291,015	+		PP_4664	0.69	-0.3
5,291,250	-				+0.3
5,291,385	+				+1.1
5,291,534	+		PP_4665	0.31	+0.8
5,291,535	-		PP_4665	0.32	+0.8
5,291,535	-		PP_4665	0.32	-1.1
5,291,535	-		PP_4665	0.32	+1.2
5,291,603	+		PP_4665	0.51	-0.6
5,291,603	+		PP_4665	0.51	+0.3
5,291,604	-		PP_4665	0.52	-0.3
5,291,604	-		PP_4665	0.52	+0.7
5,291,604	-		PP_4665	0.52	+0.5
5,291,604	-		PP_4665	0.52	-0.5
5,291,608	+		PP_4665	0.53	+0.3
5,291,609	-				-1.0
5,291,639	+		PP_4665	0.62	+0.4
5,291,640	-		PP_4665	0.62	-0.3
5,291,640	-		PP_4665	0.62	+1.5
5,291,722	+		PP_4665	0.86	-0.0
5,291,722	+		PP_4665	0.86	+0.5
5,291,745	+				-0.4
5,291,745	+				+0.9
5,291,746	-				-0.1
5,291,746	-				+1.2
5,291,749	+				-0.3
5,291,749	+				+0.4
5,291,749	+				-0.0
5,291,749	+				+0.2
5,291,749	+				+0.5
5,291,750	-				+1.6
5,291,750	-				-0.4
5,291,750	-				-0.5
5,291,753	+				+0.6
5,291,753	+				+1.3
5,291,754	-				-0.6
5,291,754	-				+0.2
5,291,794	+				+0.4
5,291,794	+				+0.3
5,291,794	+				-0.5
5,291,841	+				-0.1
5,291,842	-				-0.5
5,291,842	-				-0.1
5,291,842	-				+1.3
5,291,857	+				-0.1
5,291,857	+				+0.3
5,291,858	-				+0.2
5,291,916	+				-0.3
5,292,039	-				+0.6
5,292,150	-		PP_4666	0.21	+0.8
5,292,197	+		PP_4666	0.26	-1.0
5,292,197	+		PP_4666	0.26	-0.4
5,292,197	+		PP_4666	0.26	-0.8
5,292,198	-		PP_4666	0.27	-0.1
5,292,198	-		PP_4666	0.27	-0.4
5,292,258	+		PP_4666	0.33	-0.6