Strain Fitness in Pseudomonas putida KT2440 around PP_2840

Experiment: pinene 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pinene 10 vol%
3,243,550	+		PP_2839	0.71	+0.9
3,243,550	+		PP_2839	0.71	+0.3
3,243,659	-		PP_2839	0.76	+0.2
3,243,713	-		PP_2839	0.78	+0.5
3,243,733	+		PP_2839	0.79	-0.9
3,243,733	+		PP_2839	0.79	+0.5
3,243,733	+		PP_2839	0.79	-0.5
3,243,733	+		PP_2839	0.79	-0.9
3,243,734	-		PP_2839	0.79	+0.1
3,243,734	-		PP_2839	0.79	+0.1
3,243,903	-		PP_2839	0.86	-0.8
3,244,058	-				-0.2
3,244,130	+				-1.9
3,244,359	+				+0.7
3,244,622	-		PP_2840	0.26	+0.6
3,244,666	-		PP_2840	0.30	-0.3
3,244,695	-		PP_2840	0.32	-0.9
3,244,821	-		PP_2840	0.43	-0.3
3,244,914	-		PP_2840	0.51	-0.1
3,244,914	-		PP_2840	0.51	-0.4
3,244,931	+		PP_2840	0.52	+0.2
3,244,970	+		PP_2840	0.56	+1.8
3,244,971	-		PP_2840	0.56	-0.5
3,245,159	-		PP_2840	0.72	+0.1
3,245,518	-				-1.1
3,245,743	+				-0.4
3,245,743	+				+0.2
3,245,743	+				-0.1
3,245,744	-				-0.5
3,245,744	-				+0.9
3,245,744	-				-0.4
3,245,744	-				-0.9
3,245,785	+				+0.2
3,245,786	-				-0.3
3,245,786	-				+0.1
3,245,932	+		PP_2841	0.21	+3.7
3,245,933	-		PP_2841	0.21	+0.7
3,245,933	-		PP_2841	0.21	-0.2
3,245,933	-		PP_2841	0.21	-0.9
3,246,006	+		PP_2841	0.30	+0.7
3,246,122	+		PP_2841	0.43	-0.5
3,246,122	+		PP_2841	0.43	+0.0
3,246,122	+		PP_2841	0.43	+0.3
3,246,262	+		PP_2841	0.59	-0.2
3,246,415	+		PP_2841	0.76	-0.4
3,246,415	+		PP_2841	0.76	+0.6
3,246,415	+		PP_2841	0.76	-1.2
3,246,418	+		PP_2841	0.76	-0.1
3,246,418	+		PP_2841	0.76	-0.1
3,246,418	+		PP_2841	0.76	-0.8