Strain Fitness in Pseudomonas putida KT2440 around PP_2577

Experiment: pinene 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pinene 10 vol%
2,942,626	-				+0.1
2,942,943	-				-0.1
2,942,943	-				+0.5
2,943,121	-				+0.1
2,943,174	-				+0.4
2,943,174	-				+1.3
2,943,403	+				+0.0
2,943,403	+				-0.8
2,943,404	-				+1.3
2,943,404	-				+0.0
2,943,649	-				-0.5
2,943,777	+		PP_2577	0.12	-0.5
2,944,049	+		PP_2577	0.29	+0.2
2,944,049	+		PP_2577	0.29	-0.1
2,944,049	+		PP_2577	0.29	+0.2
2,944,050	-		PP_2577	0.29	+0.6
2,944,050	-		PP_2577	0.29	-0.0
2,944,125	-		PP_2577	0.34	+1.3
2,944,402	-		PP_2577	0.51	-0.7
2,944,556	+		PP_2577	0.60	-0.6
2,944,557	-		PP_2577	0.60	-0.2
2,944,603	-		PP_2577	0.63	-0.1
2,944,605	-		PP_2577	0.63	-0.7
2,945,016	+		PP_2577	0.88	-0.4
2,945,016	+		PP_2577	0.88	-0.6
2,945,016	+		PP_2577	0.88	+1.2
2,945,017	-		PP_2577	0.88	+0.2
2,945,121	+				+0.9
2,945,122	-				-0.1
2,945,299	+		PP_2578	0.14	+0.6
2,945,632	-		PP_2578	0.77	+0.3
2,945,739	+				-0.3
2,945,768	+				-0.1
2,945,928	-				+0.3
2,945,928	-				+0.4
2,946,030	+		PP_2579	0.15	+1.0
2,946,031	-		PP_2579	0.15	+0.9
2,946,062	+		PP_2579	0.17	+0.1
2,946,062	+		PP_2579	0.17	+0.5
2,946,063	-		PP_2579	0.17	-0.4
2,946,122	+		PP_2579	0.20	+0.1
2,946,123	-		PP_2579	0.20	+0.9
2,946,123	-		PP_2579	0.20	+0.6
2,946,123	-		PP_2579	0.20	-0.1
2,946,123	-		PP_2579	0.20	+0.0
2,946,149	+		PP_2579	0.22	-1.1
2,946,149	+		PP_2579	0.22	-0.2
2,946,149	+		PP_2579	0.22	-1.1
2,946,150	-		PP_2579	0.22	+0.4
2,946,150	-		PP_2579	0.22	-0.2
2,946,182	+		PP_2579	0.24	+0.5
2,946,209	+		PP_2579	0.25	+0.3
2,946,210	-		PP_2579	0.25	-0.4
2,946,210	-		PP_2579	0.25	+0.4
2,946,210	-		PP_2579	0.25	+0.4
2,946,210	-		PP_2579	0.25	+0.6