Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28710

Experiment: perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_28705 and AO356_28710 are separated by 11 nucleotidesAO356_28710 and AO356_28715 are separated by 82 nucleotides AO356_28705: AO356_28705 - hypothetical protein, at 6,669,845 to 6,671,194 _28705 AO356_28710: AO356_28710 - aldehyde dehydrogenase, at 6,671,206 to 6,672,627 _28710 AO356_28715: AO356_28715 - amino acid permease, at 6,672,710 to 6,674,158 _28715 Position (kb) 6671 6672 6673Strain fitness (log2 ratio) -1 0 1at 6670.230 kb on + strand, within AO356_28705at 6670.231 kb on - strand, within AO356_28705at 6670.231 kb on - strand, within AO356_28705at 6670.237 kb on - strand, within AO356_28705at 6670.327 kb on - strand, within AO356_28705at 6670.705 kb on - strand, within AO356_28705at 6670.962 kb on + strand, within AO356_28705at 6671.085 kb on + strandat 6671.191 kb on - strandat 6671.191 kb on - strandat 6671.232 kb on - strandat 6672.091 kb on + strand, within AO356_28710at 6672.456 kb on - strand, within AO356_28710at 6673.168 kb on + strand, within AO356_28715at 6673.197 kb on + strand, within AO356_28715at 6673.242 kb on + strand, within AO356_28715at 6673.407 kb on + strand, within AO356_28715at 6673.408 kb on - strand, within AO356_28715at 6673.437 kb on + strand, within AO356_28715at 6673.438 kb on - strand, within AO356_28715

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 75 mM
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6,670,230 + AO356_28705 0.29 +0.2
6,670,231 - AO356_28705 0.29 +0.5
6,670,231 - AO356_28705 0.29 +0.4
6,670,237 - AO356_28705 0.29 +0.6
6,670,327 - AO356_28705 0.36 +0.6
6,670,705 - AO356_28705 0.64 -1.0
6,670,962 + AO356_28705 0.83 -0.3
6,671,085 + -1.1
6,671,191 - -1.3
6,671,191 - +0.3
6,671,232 - +0.5
6,672,091 + AO356_28710 0.62 +1.1
6,672,456 - AO356_28710 0.88 +0.5
6,673,168 + AO356_28715 0.32 -0.2
6,673,197 + AO356_28715 0.34 -0.2
6,673,242 + AO356_28715 0.37 -0.8
6,673,407 + AO356_28715 0.48 +1.3
6,673,408 - AO356_28715 0.48 +0.4
6,673,437 + AO356_28715 0.50 -0.5
6,673,438 - AO356_28715 0.50 -0.1

Or see this region's nucleotide sequence