Experiment: perchlorate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_28430 and AO356_28435 are separated by 153 nucleotides AO356_28435 and AO356_28440 are separated by 15 nucleotides AO356_28440 and AO356_28445 are separated by 118 nucleotides
AO356_28430: AO356_28430 - hypothetical protein, at 6,610,671 to 6,611,048
_28430
AO356_28435: AO356_28435 - SAM-dependent methyltransferase, at 6,611,202 to 6,611,897
_28435
AO356_28440: AO356_28440 - galactose 1-dehydrogenase, at 6,611,913 to 6,612,839
_28440
AO356_28445: AO356_28445 - decarboxylase, at 6,612,958 to 6,613,752
_28445
Position (kb)
6611
6612
6613 Strain fitness (log2 ratio)
-1
0
1 at 6610.965 kb on + strand, within AO356_28430 at 6610.989 kb on - strand, within AO356_28430 at 6611.018 kb on + strand at 6611.018 kb on + strand at 6611.019 kb on - strand at 6611.380 kb on + strand, within AO356_28435 at 6611.380 kb on + strand, within AO356_28435 at 6611.398 kb on + strand, within AO356_28435 at 6611.441 kb on - strand, within AO356_28435 at 6611.849 kb on + strand at 6612.034 kb on + strand, within AO356_28440 at 6612.921 kb on + strand at 6612.922 kb on - strand at 6612.922 kb on - strand at 6612.925 kb on + strand at 6613.088 kb on + strand, within AO356_28445 at 6613.531 kb on + strand, within AO356_28445 at 6613.591 kb on + strand, within AO356_28445
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 75 mM remove 6,610,965 + AO356_28430 0.78 -0.1 6,610,989 - AO356_28430 0.84 +0.2 6,611,018 + +0.4 6,611,018 + +0.5 6,611,019 - +0.8 6,611,380 + AO356_28435 0.26 +0.4 6,611,380 + AO356_28435 0.26 -1.0 6,611,398 + AO356_28435 0.28 +0.2 6,611,441 - AO356_28435 0.34 -0.2 6,611,849 + +0.8 6,612,034 + AO356_28440 0.13 +0.6 6,612,921 + +0.3 6,612,922 - +0.3 6,612,922 - -0.3 6,612,925 + +0.1 6,613,088 + AO356_28445 0.16 -1.1 6,613,531 + AO356_28445 0.72 +1.3 6,613,591 + AO356_28445 0.80 +0.2
Or see this region's nucleotide sequence