Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27615

Experiment: perchlorate 75 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_27610 and AO356_27615 are separated by 567 nucleotidesAO356_27615 and AO356_27620 are separated by 197 nucleotides AO356_27610: AO356_27610 - RND transporter, at 6,300,562 to 6,301,983 _27610 AO356_27615: AO356_27615 - hypothetical protein, at 6,302,551 to 6,303,609 _27615 AO356_27620: AO356_27620 - circadian clock protein KaiC, at 6,303,807 to 6,305,309 _27620 Position (kb) 6302 6303 6304Strain fitness (log2 ratio) -3 -2 -1 0 1at 6301.596 kb on + strand, within AO356_27610at 6301.597 kb on - strand, within AO356_27610at 6301.933 kb on + strandat 6302.729 kb on - strand, within AO356_27615at 6303.011 kb on - strand, within AO356_27615at 6303.088 kb on + strand, within AO356_27615at 6303.284 kb on - strand, within AO356_27615at 6303.511 kb on + strandat 6303.512 kb on - strandat 6303.669 kb on + strandat 6303.670 kb on - strandat 6303.685 kb on + strandat 6303.686 kb on - strandat 6303.706 kb on - strandat 6303.802 kb on + strandat 6303.813 kb on - strandat 6303.818 kb on + strandat 6303.993 kb on + strand, within AO356_27620at 6303.994 kb on - strand, within AO356_27620at 6303.994 kb on - strand, within AO356_27620at 6303.994 kb on - strand, within AO356_27620at 6304.067 kb on + strand, within AO356_27620at 6304.067 kb on + strand, within AO356_27620at 6304.068 kb on - strand, within AO356_27620at 6304.294 kb on - strand, within AO356_27620at 6304.364 kb on - strand, within AO356_27620at 6304.364 kb on - strand, within AO356_27620at 6304.414 kb on - strand, within AO356_27620at 6304.464 kb on + strand, within AO356_27620at 6304.551 kb on + strand, within AO356_27620

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 75 mM
remove
6,301,596 + AO356_27610 0.73 +0.4
6,301,597 - AO356_27610 0.73 -0.1
6,301,933 + +0.7
6,302,729 - AO356_27615 0.17 -0.8
6,303,011 - AO356_27615 0.43 +0.9
6,303,088 + AO356_27615 0.51 -0.3
6,303,284 - AO356_27615 0.69 -2.9
6,303,511 + -1.3
6,303,512 - -0.5
6,303,669 + +0.4
6,303,670 - -1.4
6,303,685 + -1.4
6,303,686 - -0.1
6,303,706 - -1.1
6,303,802 + +1.0
6,303,813 - -0.9
6,303,818 + +0.2
6,303,993 + AO356_27620 0.12 -0.6
6,303,994 - AO356_27620 0.12 -0.6
6,303,994 - AO356_27620 0.12 +0.5
6,303,994 - AO356_27620 0.12 +0.2
6,304,067 + AO356_27620 0.17 -0.6
6,304,067 + AO356_27620 0.17 -0.9
6,304,068 - AO356_27620 0.17 -0.3
6,304,294 - AO356_27620 0.32 +0.2
6,304,364 - AO356_27620 0.37 +0.4
6,304,364 - AO356_27620 0.37 -1.2
6,304,414 - AO356_27620 0.40 -1.3
6,304,464 + AO356_27620 0.44 -0.7
6,304,551 + AO356_27620 0.50 +0.9

Or see this region's nucleotide sequence