Experiment: perchlorate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25735 and AO356_25740 are separated by 82 nucleotides AO356_25740 and AO356_25745 overlap by 11 nucleotides AO356_25745 and AO356_25750 are separated by 2 nucleotides AO356_25750 and AO356_25755 are separated by 60 nucleotides AO356_25755 and AO356_25760 are separated by 132 nucleotides
AO356_25735: AO356_25735 - 3,4-dihydroxy-2-butanone 4-phosphate synthase, at 5,820,961 to 5,822,070
_25735
AO356_25740: AO356_25740 - hypothetical protein, at 5,822,153 to 5,822,455
_25740
AO356_25745: AO356_25745 - NUDIX hydrolase, at 5,822,445 to 5,823,008
_25745
AO356_25750: AO356_25750 - GntR family transcriptional regulator, at 5,823,011 to 5,823,763
_25750
AO356_25755: AO356_25755 - 4-carboxymuconolactone decarboxylase, at 5,823,824 to 5,824,228
_25755
AO356_25760: AO356_25760 - flavin reductase, at 5,824,361 to 5,824,846
_25760
Position (kb) 5823
5824 Strain fitness (log2 ratio) -2
-1
0
1 at 5822.153 kb on - strand at 5822.163 kb on - strand at 5822.201 kb on + strand, within AO356_25740 at 5822.210 kb on + strand, within AO356_25740 at 5822.211 kb on - strand, within AO356_25740 at 5822.242 kb on - strand, within AO356_25740 at 5822.242 kb on - strand, within AO356_25740 at 5822.244 kb on - strand, within AO356_25740 at 5822.244 kb on - strand, within AO356_25740 at 5822.244 kb on - strand, within AO356_25740 at 5822.336 kb on + strand, within AO356_25740 at 5822.358 kb on - strand, within AO356_25740 at 5822.372 kb on + strand, within AO356_25740 at 5822.489 kb on - strand at 5822.489 kb on - strand at 5822.489 kb on - strand at 5822.489 kb on - strand at 5822.489 kb on - strand at 5822.497 kb on + strand at 5822.498 kb on - strand at 5822.522 kb on + strand, within AO356_25745 at 5822.524 kb on + strand, within AO356_25745 at 5822.524 kb on + strand, within AO356_25745 at 5822.557 kb on + strand, within AO356_25745 at 5822.557 kb on + strand, within AO356_25745 at 5822.557 kb on + strand, within AO356_25745 at 5822.558 kb on - strand, within AO356_25745 at 5822.558 kb on - strand, within AO356_25745 at 5822.662 kb on + strand, within AO356_25745 at 5822.662 kb on + strand, within AO356_25745 at 5822.662 kb on + strand, within AO356_25745 at 5822.662 kb on + strand, within AO356_25745 at 5822.662 kb on + strand, within AO356_25745 at 5822.663 kb on - strand, within AO356_25745 at 5822.663 kb on - strand, within AO356_25745 at 5822.663 kb on - strand, within AO356_25745 at 5822.722 kb on - strand, within AO356_25745 at 5822.845 kb on + strand, within AO356_25745 at 5822.905 kb on + strand, within AO356_25745 at 5823.097 kb on - strand, within AO356_25750 at 5823.253 kb on - strand, within AO356_25750 at 5823.487 kb on - strand, within AO356_25750 at 5823.778 kb on - strand at 5823.781 kb on - strand at 5823.781 kb on - strand at 5823.921 kb on + strand, within AO356_25755 at 5823.922 kb on - strand, within AO356_25755 at 5823.922 kb on - strand, within AO356_25755 at 5823.922 kb on - strand, within AO356_25755 at 5823.922 kb on - strand, within AO356_25755 at 5823.951 kb on - strand, within AO356_25755 at 5824.167 kb on + strand, within AO356_25755 at 5824.167 kb on + strand, within AO356_25755 at 5824.482 kb on + strand, within AO356_25760 at 5824.483 kb on - strand, within AO356_25760 at 5824.483 kb on - strand, within AO356_25760 at 5824.602 kb on + strand, within AO356_25760 at 5824.686 kb on + strand, within AO356_25760 at 5824.687 kb on - strand, within AO356_25760 at 5824.687 kb on - strand, within AO356_25760
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 75 mM remove 5,822,153 - +0.8 5,822,163 - +0.5 5,822,201 + AO356_25740 0.16 +0.6 5,822,210 + AO356_25740 0.19 +0.7 5,822,211 - AO356_25740 0.19 -1.7 5,822,242 - AO356_25740 0.29 -1.7 5,822,242 - AO356_25740 0.29 +0.2 5,822,244 - AO356_25740 0.30 +0.3 5,822,244 - AO356_25740 0.30 +0.3 5,822,244 - AO356_25740 0.30 -0.1 5,822,336 + AO356_25740 0.60 +0.3 5,822,358 - AO356_25740 0.68 +0.7 5,822,372 + AO356_25740 0.72 +0.5 5,822,489 - -0.4 5,822,489 - +0.0 5,822,489 - -0.2 5,822,489 - +1.3 5,822,489 - -0.0 5,822,497 + -1.2 5,822,498 - -1.7 5,822,522 + AO356_25745 0.14 -0.0 5,822,524 + AO356_25745 0.14 +1.0 5,822,524 + AO356_25745 0.14 +0.9 5,822,557 + AO356_25745 0.20 +0.3 5,822,557 + AO356_25745 0.20 +0.1 5,822,557 + AO356_25745 0.20 +0.4 5,822,558 - AO356_25745 0.20 -1.0 5,822,558 - AO356_25745 0.20 -0.1 5,822,662 + AO356_25745 0.38 -0.2 5,822,662 + AO356_25745 0.38 -0.5 5,822,662 + AO356_25745 0.38 +0.4 5,822,662 + AO356_25745 0.38 -1.3 5,822,662 + AO356_25745 0.38 -0.8 5,822,663 - AO356_25745 0.39 -0.4 5,822,663 - AO356_25745 0.39 -0.6 5,822,663 - AO356_25745 0.39 -0.4 5,822,722 - AO356_25745 0.49 -0.5 5,822,845 + AO356_25745 0.71 +1.0 5,822,905 + AO356_25745 0.82 -0.4 5,823,097 - AO356_25750 0.11 +0.1 5,823,253 - AO356_25750 0.32 -1.2 5,823,487 - AO356_25750 0.63 -0.5 5,823,778 - +0.1 5,823,781 - +1.2 5,823,781 - +0.4 5,823,921 + AO356_25755 0.24 -0.1 5,823,922 - AO356_25755 0.24 +0.3 5,823,922 - AO356_25755 0.24 +1.1 5,823,922 - AO356_25755 0.24 -0.9 5,823,922 - AO356_25755 0.24 +0.7 5,823,951 - AO356_25755 0.31 +1.1 5,824,167 + AO356_25755 0.85 +1.1 5,824,167 + AO356_25755 0.85 -1.0 5,824,482 + AO356_25760 0.25 -0.7 5,824,483 - AO356_25760 0.25 +0.5 5,824,483 - AO356_25760 0.25 -0.6 5,824,602 + AO356_25760 0.50 +0.2 5,824,686 + AO356_25760 0.67 +0.1 5,824,687 - AO356_25760 0.67 +0.8 5,824,687 - AO356_25760 0.67 -1.8
Or see this region's nucleotide sequence