Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_14820

Experiment: perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_14815 and AO356_14820 are separated by 81 nucleotidesAO356_14820 and AO356_14825 are separated by 98 nucleotides AO356_14815: AO356_14815 - Cro/Cl family transcriptional regulator, at 3,350,239 to 3,353,538 _14815 AO356_14820: AO356_14820 - Isochorismatase, at 3,353,620 to 3,354,174 _14820 AO356_14825: AO356_14825 - AraC family transcriptional regulator, at 3,354,273 to 3,355,268 _14825 Position (kb) 3353 3354 3355Strain fitness (log2 ratio) -2 -1 0 1 2at 3352.705 kb on + strand, within AO356_14815at 3352.705 kb on + strand, within AO356_14815at 3352.705 kb on + strand, within AO356_14815at 3352.705 kb on + strand, within AO356_14815at 3352.705 kb on + strand, within AO356_14815at 3352.705 kb on + strand, within AO356_14815at 3352.706 kb on - strand, within AO356_14815at 3352.708 kb on + strand, within AO356_14815at 3352.708 kb on + strand, within AO356_14815at 3352.709 kb on - strand, within AO356_14815at 3352.709 kb on - strand, within AO356_14815at 3352.709 kb on - strand, within AO356_14815at 3352.709 kb on - strand, within AO356_14815at 3352.709 kb on - strand, within AO356_14815at 3352.736 kb on - strand, within AO356_14815at 3352.758 kb on - strand, within AO356_14815at 3352.831 kb on + strand, within AO356_14815at 3352.831 kb on + strand, within AO356_14815at 3352.832 kb on - strand, within AO356_14815at 3353.149 kb on + strand, within AO356_14815at 3353.149 kb on + strand, within AO356_14815at 3353.149 kb on + strand, within AO356_14815at 3353.150 kb on - strand, within AO356_14815at 3353.167 kb on + strand, within AO356_14815at 3353.168 kb on - strand, within AO356_14815at 3353.168 kb on - strand, within AO356_14815at 3353.328 kb on + strandat 3353.329 kb on - strandat 3353.329 kb on - strandat 3353.604 kb on + strandat 3353.605 kb on - strandat 3353.621 kb on + strandat 3353.622 kb on - strandat 3353.622 kb on - strandat 3353.667 kb on - strandat 3353.950 kb on + strand, within AO356_14820at 3353.951 kb on - strand, within AO356_14820at 3354.131 kb on + strandat 3354.131 kb on + strandat 3354.131 kb on + strandat 3354.131 kb on + strandat 3354.131 kb on + strandat 3354.131 kb on + strandat 3354.132 kb on - strandat 3354.132 kb on - strandat 3354.132 kb on - strandat 3354.132 kb on - strandat 3354.152 kb on - strandat 3354.199 kb on + strandat 3354.210 kb on + strandat 3354.210 kb on + strandat 3354.253 kb on + strandat 3354.253 kb on + strandat 3354.253 kb on + strandat 3354.253 kb on + strandat 3354.254 kb on - strandat 3354.254 kb on - strandat 3354.254 kb on - strandat 3354.254 kb on - strandat 3354.315 kb on + strandat 3354.316 kb on - strandat 3354.316 kb on - strandat 3354.316 kb on - strandat 3354.896 kb on + strand, within AO356_14825at 3355.072 kb on - strand, within AO356_14825

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 75 mM
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3,352,705 + AO356_14815 0.75 +0.1
3,352,705 + AO356_14815 0.75 +1.9
3,352,705 + AO356_14815 0.75 -0.2
3,352,705 + AO356_14815 0.75 -0.3
3,352,705 + AO356_14815 0.75 +0.2
3,352,705 + AO356_14815 0.75 +0.4
3,352,706 - AO356_14815 0.75 -0.2
3,352,708 + AO356_14815 0.75 +0.0
3,352,708 + AO356_14815 0.75 +0.7
3,352,709 - AO356_14815 0.75 -1.4
3,352,709 - AO356_14815 0.75 -0.7
3,352,709 - AO356_14815 0.75 -0.1
3,352,709 - AO356_14815 0.75 -0.2
3,352,709 - AO356_14815 0.75 -0.3
3,352,736 - AO356_14815 0.76 +0.9
3,352,758 - AO356_14815 0.76 -0.0
3,352,831 + AO356_14815 0.79 +0.2
3,352,831 + AO356_14815 0.79 -0.8
3,352,832 - AO356_14815 0.79 +0.0
3,353,149 + AO356_14815 0.88 -0.0
3,353,149 + AO356_14815 0.88 +1.0
3,353,149 + AO356_14815 0.88 -0.9
3,353,150 - AO356_14815 0.88 -0.1
3,353,167 + AO356_14815 0.89 -0.1
3,353,168 - AO356_14815 0.89 -0.3
3,353,168 - AO356_14815 0.89 +0.0
3,353,328 + -0.1
3,353,329 - -0.6
3,353,329 - +1.3
3,353,604 + -0.4
3,353,605 - +0.9
3,353,621 + +0.3
3,353,622 - -2.3
3,353,622 - +0.0
3,353,667 - +0.2
3,353,950 + AO356_14820 0.59 +0.2
3,353,951 - AO356_14820 0.60 +1.4
3,354,131 + -0.5
3,354,131 + +0.7
3,354,131 + +0.1
3,354,131 + -0.4
3,354,131 + -0.3
3,354,131 + +0.6
3,354,132 - +0.6
3,354,132 - -0.6
3,354,132 - +0.3
3,354,132 - +0.2
3,354,152 - +0.6
3,354,199 + -0.9
3,354,210 + +0.5
3,354,210 + -0.0
3,354,253 + -0.7
3,354,253 + -0.6
3,354,253 + +1.3
3,354,253 + -0.3
3,354,254 - +0.2
3,354,254 - -0.2
3,354,254 - -0.0
3,354,254 - -0.1
3,354,315 + +0.4
3,354,316 - -0.0
3,354,316 - +0.0
3,354,316 - -0.2
3,354,896 + AO356_14825 0.63 -1.4
3,355,072 - AO356_14825 0.80 -0.0

Or see this region's nucleotide sequence