Experiment: soil EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03210 and ABZR87_RS03215 are separated by 28 nucleotides ABZR87_RS03215 and ABZR87_RS03220 are separated by 10 nucleotides ABZR87_RS03220 and ABZR87_RS03225 overlap by 4 nucleotides ABZR87_RS03225 and ABZR87_RS03230 are separated by 91 nucleotides
ABZR87_RS03210: ABZR87_RS03210 - NAD(P)/FAD-dependent oxidoreductase, at 677,081 to 678,703
_RS03210
ABZR87_RS03215: ABZR87_RS03215 - SDR family NAD(P)-dependent oxidoreductase, at 678,732 to 679,622
_RS03215
ABZR87_RS03220: ABZR87_RS03220 - alpha/beta hydrolase, at 679,633 to 680,655
_RS03220
ABZR87_RS03225: ABZR87_RS03225 - metal-dependent hydrolase, at 680,652 to 681,548
_RS03225
ABZR87_RS03230: ABZR87_RS03230 - MerR family transcriptional regulator, at 681,640 to 682,458
_RS03230
Position (kb) 679
680
681 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 678.951 kb on + strand, within ABZR87_RS03215 at 678.951 kb on + strand, within ABZR87_RS03215 at 678.951 kb on + strand, within ABZR87_RS03215 at 678.952 kb on - strand, within ABZR87_RS03215 at 679.203 kb on + strand, within ABZR87_RS03215 at 679.204 kb on - strand, within ABZR87_RS03215 at 679.204 kb on - strand, within ABZR87_RS03215 at 679.204 kb on - strand, within ABZR87_RS03215 at 679.218 kb on + strand, within ABZR87_RS03215 at 679.219 kb on - strand, within ABZR87_RS03215 at 679.219 kb on - strand, within ABZR87_RS03215 at 679.321 kb on + strand, within ABZR87_RS03215 at 679.321 kb on + strand, within ABZR87_RS03215 at 679.321 kb on + strand, within ABZR87_RS03215 at 679.321 kb on + strand, within ABZR87_RS03215 at 679.321 kb on + strand, within ABZR87_RS03215 at 679.321 kb on + strand, within ABZR87_RS03215 at 679.322 kb on - strand, within ABZR87_RS03215 at 679.322 kb on - strand, within ABZR87_RS03215 at 679.322 kb on - strand, within ABZR87_RS03215 at 679.322 kb on - strand, within ABZR87_RS03215 at 679.322 kb on - strand, within ABZR87_RS03215 at 679.322 kb on - strand, within ABZR87_RS03215 at 679.322 kb on - strand, within ABZR87_RS03215 at 679.438 kb on + strand, within ABZR87_RS03215 at 679.438 kb on + strand, within ABZR87_RS03215 at 679.438 kb on + strand, within ABZR87_RS03215 at 679.439 kb on - strand, within ABZR87_RS03215 at 679.621 kb on - strand at 679.621 kb on - strand at 679.621 kb on - strand at 679.621 kb on - strand at 679.765 kb on + strand, within ABZR87_RS03220 at 679.816 kb on + strand, within ABZR87_RS03220 at 679.816 kb on + strand, within ABZR87_RS03220 at 679.816 kb on + strand, within ABZR87_RS03220 at 679.817 kb on - strand, within ABZR87_RS03220 at 679.817 kb on - strand, within ABZR87_RS03220 at 679.817 kb on - strand, within ABZR87_RS03220 at 679.817 kb on - strand, within ABZR87_RS03220 at 679.887 kb on + strand, within ABZR87_RS03220 at 679.887 kb on + strand, within ABZR87_RS03220 at 679.887 kb on + strand, within ABZR87_RS03220 at 679.887 kb on + strand, within ABZR87_RS03220 at 679.887 kb on + strand, within ABZR87_RS03220 at 679.887 kb on + strand, within ABZR87_RS03220 at 679.887 kb on + strand, within ABZR87_RS03220 at 679.887 kb on + strand, within ABZR87_RS03220 at 679.888 kb on - strand, within ABZR87_RS03220 at 679.888 kb on - strand, within ABZR87_RS03220 at 679.888 kb on - strand, within ABZR87_RS03220 at 679.888 kb on - strand, within ABZR87_RS03220 at 679.888 kb on - strand, within ABZR87_RS03220 at 679.888 kb on - strand, within ABZR87_RS03220 at 679.888 kb on - strand, within ABZR87_RS03220 at 679.924 kb on + strand, within ABZR87_RS03220 at 680.188 kb on + strand, within ABZR87_RS03220 at 680.189 kb on - strand, within ABZR87_RS03220 at 680.189 kb on - strand, within ABZR87_RS03220 at 680.189 kb on - strand, within ABZR87_RS03220 at 680.189 kb on - strand, within ABZR87_RS03220 at 680.278 kb on + strand, within ABZR87_RS03220 at 680.278 kb on + strand, within ABZR87_RS03220 at 680.279 kb on - strand, within ABZR87_RS03220 at 680.279 kb on - strand, within ABZR87_RS03220 at 680.279 kb on - strand, within ABZR87_RS03220 at 680.279 kb on - strand, within ABZR87_RS03220 at 680.279 kb on - strand, within ABZR87_RS03220 at 680.279 kb on - strand, within ABZR87_RS03220 at 680.335 kb on + strand, within ABZR87_RS03220 at 680.335 kb on + strand, within ABZR87_RS03220 at 680.335 kb on + strand, within ABZR87_RS03220 at 680.335 kb on + strand, within ABZR87_RS03220 at 680.335 kb on + strand, within ABZR87_RS03220 at 680.335 kb on + strand, within ABZR87_RS03220 at 680.401 kb on - strand, within ABZR87_RS03220 at 680.401 kb on - strand, within ABZR87_RS03220 at 680.524 kb on + strand, within ABZR87_RS03220 at 680.524 kb on + strand, within ABZR87_RS03220 at 680.525 kb on - strand, within ABZR87_RS03220 at 680.541 kb on + strand, within ABZR87_RS03220 at 680.542 kb on - strand, within ABZR87_RS03220 at 680.805 kb on + strand, within ABZR87_RS03225 at 680.805 kb on + strand, within ABZR87_RS03225 at 680.805 kb on + strand, within ABZR87_RS03225 at 680.806 kb on - strand, within ABZR87_RS03225 at 680.855 kb on + strand, within ABZR87_RS03225 at 680.895 kb on + strand, within ABZR87_RS03225 at 680.895 kb on + strand, within ABZR87_RS03225 at 680.895 kb on + strand, within ABZR87_RS03225 at 680.895 kb on + strand, within ABZR87_RS03225 at 680.895 kb on + strand, within ABZR87_RS03225 at 680.895 kb on + strand, within ABZR87_RS03225 at 680.895 kb on + strand, within ABZR87_RS03225 at 680.896 kb on - strand, within ABZR87_RS03225 at 680.896 kb on - strand, within ABZR87_RS03225 at 680.949 kb on - strand, within ABZR87_RS03225 at 680.979 kb on + strand, within ABZR87_RS03225 at 680.980 kb on - strand, within ABZR87_RS03225 at 680.980 kb on - strand, within ABZR87_RS03225 at 680.980 kb on - strand, within ABZR87_RS03225 at 680.980 kb on - strand, within ABZR87_RS03225 at 681.027 kb on + strand, within ABZR87_RS03225 at 681.027 kb on + strand, within ABZR87_RS03225 at 681.027 kb on + strand, within ABZR87_RS03225 at 681.028 kb on - strand, within ABZR87_RS03225 at 681.028 kb on - strand, within ABZR87_RS03225 at 681.154 kb on - strand, within ABZR87_RS03225 at 681.160 kb on + strand, within ABZR87_RS03225 at 681.160 kb on + strand, within ABZR87_RS03225 at 681.160 kb on + strand, within ABZR87_RS03225 at 681.160 kb on + strand, within ABZR87_RS03225 at 681.160 kb on + strand, within ABZR87_RS03225 at 681.160 kb on + strand, within ABZR87_RS03225 at 681.161 kb on - strand, within ABZR87_RS03225 at 681.161 kb on - strand, within ABZR87_RS03225 at 681.161 kb on - strand, within ABZR87_RS03225 at 681.161 kb on - strand, within ABZR87_RS03225 at 681.161 kb on - strand, within ABZR87_RS03225 at 681.161 kb on - strand, within ABZR87_RS03225 at 681.161 kb on - strand, within ABZR87_RS03225 at 681.161 kb on - strand, within ABZR87_RS03225 at 681.161 kb on - strand, within ABZR87_RS03225 at 681.161 kb on - strand, within ABZR87_RS03225 at 681.161 kb on - strand, within ABZR87_RS03225 at 681.195 kb on + strand, within ABZR87_RS03225 at 681.196 kb on - strand, within ABZR87_RS03225 at 681.234 kb on - strand, within ABZR87_RS03225 at 681.255 kb on + strand, within ABZR87_RS03225 at 681.255 kb on + strand, within ABZR87_RS03225 at 681.255 kb on + strand, within ABZR87_RS03225 at 681.255 kb on + strand, within ABZR87_RS03225 at 681.255 kb on + strand, within ABZR87_RS03225 at 681.255 kb on + strand, within ABZR87_RS03225 at 681.256 kb on - strand, within ABZR87_RS03225 at 681.256 kb on - strand, within ABZR87_RS03225 at 681.256 kb on - strand, within ABZR87_RS03225 at 681.471 kb on + strand at 681.471 kb on + strand at 681.471 kb on + strand at 681.471 kb on + strand at 681.472 kb on - strand at 681.472 kb on - strand at 681.472 kb on - strand at 681.472 kb on - strand at 681.598 kb on - strand at 681.601 kb on + strand at 681.601 kb on + strand at 681.601 kb on + strand at 681.601 kb on + strand at 681.601 kb on + strand at 681.602 kb on - strand at 681.602 kb on - strand at 681.602 kb on - strand at 681.602 kb on - strand at 681.602 kb on - strand at 681.602 kb on - strand at 681.602 kb on - strand at 681.602 kb on - strand at 681.605 kb on + strand at 681.606 kb on - strand at 681.606 kb on - strand at 681.606 kb on - strand at 681.642 kb on - strand at 681.642 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB remove 678,951 + ABZR87_RS03215 0.25 -1.8 678,951 + ABZR87_RS03215 0.25 -1.8 678,951 + ABZR87_RS03215 0.25 -4.1 678,952 - ABZR87_RS03215 0.25 -3.0 679,203 + ABZR87_RS03215 0.53 +0.4 679,204 - ABZR87_RS03215 0.53 -2.1 679,204 - ABZR87_RS03215 0.53 -2.8 679,204 - ABZR87_RS03215 0.53 +0.7 679,218 + ABZR87_RS03215 0.55 +0.6 679,219 - ABZR87_RS03215 0.55 -1.5 679,219 - ABZR87_RS03215 0.55 +2.9 679,321 + ABZR87_RS03215 0.66 +1.0 679,321 + ABZR87_RS03215 0.66 -0.8 679,321 + ABZR87_RS03215 0.66 +1.2 679,321 + ABZR87_RS03215 0.66 -1.3 679,321 + ABZR87_RS03215 0.66 -2.2 679,321 + ABZR87_RS03215 0.66 -1.5 679,322 - ABZR87_RS03215 0.66 +0.7 679,322 - ABZR87_RS03215 0.66 -2.3 679,322 - ABZR87_RS03215 0.66 -1.3 679,322 - ABZR87_RS03215 0.66 +0.8 679,322 - ABZR87_RS03215 0.66 -1.8 679,322 - ABZR87_RS03215 0.66 +0.5 679,322 - ABZR87_RS03215 0.66 -0.5 679,438 + ABZR87_RS03215 0.79 -4.2 679,438 + ABZR87_RS03215 0.79 -2.8 679,438 + ABZR87_RS03215 0.79 -0.0 679,439 - ABZR87_RS03215 0.79 -1.3 679,621 - -1.2 679,621 - +1.1 679,621 - -3.5 679,621 - -2.0 679,765 + ABZR87_RS03220 0.13 +1.4 679,816 + ABZR87_RS03220 0.18 +1.3 679,816 + ABZR87_RS03220 0.18 -1.2 679,816 + ABZR87_RS03220 0.18 +1.3 679,817 - ABZR87_RS03220 0.18 +1.4 679,817 - ABZR87_RS03220 0.18 +0.2 679,817 - ABZR87_RS03220 0.18 +1.2 679,817 - ABZR87_RS03220 0.18 -0.5 679,887 + ABZR87_RS03220 0.25 +0.9 679,887 + ABZR87_RS03220 0.25 -0.4 679,887 + ABZR87_RS03220 0.25 +0.1 679,887 + ABZR87_RS03220 0.25 +1.0 679,887 + ABZR87_RS03220 0.25 +0.5 679,887 + ABZR87_RS03220 0.25 +1.0 679,887 + ABZR87_RS03220 0.25 -0.6 679,887 + ABZR87_RS03220 0.25 -0.8 679,888 - ABZR87_RS03220 0.25 -2.9 679,888 - ABZR87_RS03220 0.25 +0.1 679,888 - ABZR87_RS03220 0.25 +0.9 679,888 - ABZR87_RS03220 0.25 -2.3 679,888 - ABZR87_RS03220 0.25 -2.4 679,888 - ABZR87_RS03220 0.25 -3.3 679,888 - ABZR87_RS03220 0.25 -1.9 679,924 + ABZR87_RS03220 0.28 -1.6 680,188 + ABZR87_RS03220 0.54 -2.6 680,189 - ABZR87_RS03220 0.54 -0.4 680,189 - ABZR87_RS03220 0.54 -1.4 680,189 - ABZR87_RS03220 0.54 +1.5 680,189 - ABZR87_RS03220 0.54 +1.6 680,278 + ABZR87_RS03220 0.63 +0.8 680,278 + ABZR87_RS03220 0.63 -1.3 680,279 - ABZR87_RS03220 0.63 -2.8 680,279 - ABZR87_RS03220 0.63 +2.3 680,279 - ABZR87_RS03220 0.63 +1.4 680,279 - ABZR87_RS03220 0.63 -0.9 680,279 - ABZR87_RS03220 0.63 -0.8 680,279 - ABZR87_RS03220 0.63 -0.7 680,335 + ABZR87_RS03220 0.69 -3.3 680,335 + ABZR87_RS03220 0.69 +2.1 680,335 + ABZR87_RS03220 0.69 +0.8 680,335 + ABZR87_RS03220 0.69 +2.4 680,335 + ABZR87_RS03220 0.69 -3.4 680,335 + ABZR87_RS03220 0.69 -4.1 680,401 - ABZR87_RS03220 0.75 +0.6 680,401 - ABZR87_RS03220 0.75 -3.5 680,524 + ABZR87_RS03220 0.87 +1.3 680,524 + ABZR87_RS03220 0.87 +0.9 680,525 - ABZR87_RS03220 0.87 +3.4 680,541 + ABZR87_RS03220 0.89 -2.7 680,542 - ABZR87_RS03220 0.89 +4.9 680,805 + ABZR87_RS03225 0.17 +3.7 680,805 + ABZR87_RS03225 0.17 -2.2 680,805 + ABZR87_RS03225 0.17 +1.0 680,806 - ABZR87_RS03225 0.17 +1.6 680,855 + ABZR87_RS03225 0.23 +0.9 680,895 + ABZR87_RS03225 0.27 +3.1 680,895 + ABZR87_RS03225 0.27 +2.4 680,895 + ABZR87_RS03225 0.27 -1.0 680,895 + ABZR87_RS03225 0.27 +1.2 680,895 + ABZR87_RS03225 0.27 -3.4 680,895 + ABZR87_RS03225 0.27 -0.4 680,895 + ABZR87_RS03225 0.27 +0.7 680,896 - ABZR87_RS03225 0.27 +0.2 680,896 - ABZR87_RS03225 0.27 -0.6 680,949 - ABZR87_RS03225 0.33 -3.1 680,979 + ABZR87_RS03225 0.36 +0.3 680,980 - ABZR87_RS03225 0.37 -0.2 680,980 - ABZR87_RS03225 0.37 +1.2 680,980 - ABZR87_RS03225 0.37 -0.9 680,980 - ABZR87_RS03225 0.37 -2.0 681,027 + ABZR87_RS03225 0.42 -1.3 681,027 + ABZR87_RS03225 0.42 +0.7 681,027 + ABZR87_RS03225 0.42 +1.4 681,028 - ABZR87_RS03225 0.42 -2.8 681,028 - ABZR87_RS03225 0.42 -2.4 681,154 - ABZR87_RS03225 0.56 -3.2 681,160 + ABZR87_RS03225 0.57 +0.2 681,160 + ABZR87_RS03225 0.57 -2.6 681,160 + ABZR87_RS03225 0.57 +0.8 681,160 + ABZR87_RS03225 0.57 -1.4 681,160 + ABZR87_RS03225 0.57 +2.2 681,160 + ABZR87_RS03225 0.57 -0.3 681,161 - ABZR87_RS03225 0.57 -3.0 681,161 - ABZR87_RS03225 0.57 -4.6 681,161 - ABZR87_RS03225 0.57 +0.5 681,161 - ABZR87_RS03225 0.57 -0.3 681,161 - ABZR87_RS03225 0.57 -1.4 681,161 - ABZR87_RS03225 0.57 -1.3 681,161 - ABZR87_RS03225 0.57 +1.3 681,161 - ABZR87_RS03225 0.57 -4.1 681,161 - ABZR87_RS03225 0.57 -1.9 681,161 - ABZR87_RS03225 0.57 +0.8 681,161 - ABZR87_RS03225 0.57 +0.1 681,195 + ABZR87_RS03225 0.61 -1.1 681,196 - ABZR87_RS03225 0.61 -0.1 681,234 - ABZR87_RS03225 0.65 -1.6 681,255 + ABZR87_RS03225 0.67 -0.2 681,255 + ABZR87_RS03225 0.67 -0.1 681,255 + ABZR87_RS03225 0.67 +1.4 681,255 + ABZR87_RS03225 0.67 +0.8 681,255 + ABZR87_RS03225 0.67 -3.3 681,255 + ABZR87_RS03225 0.67 -0.6 681,256 - ABZR87_RS03225 0.67 +1.9 681,256 - ABZR87_RS03225 0.67 +0.8 681,256 - ABZR87_RS03225 0.67 -2.8 681,471 + -2.3 681,471 + -3.3 681,471 + +1.3 681,471 + -2.6 681,472 - -1.1 681,472 - +2.0 681,472 - -3.1 681,472 - +0.2 681,598 - -0.7 681,601 + +1.2 681,601 + -2.7 681,601 + +0.4 681,601 + -2.9 681,601 + -4.3 681,602 - -2.2 681,602 - +1.0 681,602 - +0.5 681,602 - +0.9 681,602 - -2.9 681,602 - -2.8 681,602 - -1.1 681,602 - -1.1 681,605 + -0.0 681,606 - +0.7 681,606 - -2.9 681,606 - -0.2 681,642 - +1.0 681,642 - +0.2
Or see this region's nucleotide sequence