Experiment: Chlorite 0.08 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_20515 and AO356_20520 overlap by 4 nucleotides AO356_20520 and AO356_20525 are separated by 6 nucleotides
AO356_20515: AO356_20515 - late control protein, at 4,578,395 to 4,579,645
_20515
AO356_20520: AO356_20520 - oxidoreductase, at 4,579,642 to 4,580,082
_20520
AO356_20525: AO356_20525 - hypothetical protein, at 4,580,089 to 4,582,632
_20525
Position (kb)
4579
4580
4581 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4578.642 kb on + strand, within AO356_20515 at 4578.664 kb on + strand, within AO356_20515 at 4578.664 kb on + strand, within AO356_20515 at 4578.701 kb on + strand, within AO356_20515 at 4578.729 kb on + strand, within AO356_20515 at 4578.774 kb on + strand, within AO356_20515 at 4578.852 kb on + strand, within AO356_20515 at 4578.852 kb on + strand, within AO356_20515 at 4578.895 kb on + strand, within AO356_20515 at 4578.920 kb on + strand, within AO356_20515 at 4578.927 kb on + strand, within AO356_20515 at 4578.927 kb on + strand, within AO356_20515 at 4578.927 kb on + strand, within AO356_20515 at 4578.951 kb on + strand, within AO356_20515 at 4578.971 kb on + strand, within AO356_20515 at 4579.318 kb on + strand, within AO356_20515 at 4579.318 kb on + strand, within AO356_20515 at 4579.318 kb on + strand, within AO356_20515 at 4579.318 kb on + strand, within AO356_20515 at 4579.318 kb on + strand, within AO356_20515 at 4579.318 kb on + strand, within AO356_20515 at 4579.319 kb on - strand, within AO356_20515 at 4579.323 kb on - strand, within AO356_20515 at 4579.363 kb on - strand, within AO356_20515 at 4579.363 kb on - strand, within AO356_20515 at 4579.587 kb on + strand at 4579.587 kb on + strand at 4579.588 kb on - strand at 4579.588 kb on - strand at 4579.594 kb on + strand at 4579.594 kb on + strand at 4579.594 kb on + strand at 4579.595 kb on - strand at 4579.612 kb on - strand at 4579.815 kb on - strand, within AO356_20520 at 4579.815 kb on - strand, within AO356_20520 at 4579.935 kb on + strand, within AO356_20520 at 4580.161 kb on + strand at 4580.161 kb on + strand at 4580.162 kb on - strand at 4580.162 kb on - strand at 4580.162 kb on - strand at 4580.219 kb on + strand at 4580.219 kb on + strand at 4580.219 kb on + strand at 4580.219 kb on + strand at 4580.219 kb on + strand at 4580.220 kb on - strand at 4580.220 kb on - strand at 4580.220 kb on - strand at 4580.220 kb on - strand at 4580.220 kb on - strand at 4580.220 kb on - strand at 4580.220 kb on - strand at 4580.347 kb on - strand, within AO356_20525 at 4580.377 kb on + strand, within AO356_20525 at 4580.425 kb on + strand, within AO356_20525 at 4580.571 kb on + strand, within AO356_20525 at 4580.600 kb on + strand, within AO356_20525 at 4580.600 kb on + strand, within AO356_20525 at 4580.608 kb on + strand, within AO356_20525 at 4580.609 kb on - strand, within AO356_20525 at 4580.627 kb on + strand, within AO356_20525 at 4580.627 kb on + strand, within AO356_20525 at 4580.627 kb on + strand, within AO356_20525 at 4580.628 kb on - strand, within AO356_20525 at 4580.722 kb on + strand, within AO356_20525 at 4580.726 kb on + strand, within AO356_20525 at 4580.726 kb on + strand, within AO356_20525 at 4580.727 kb on - strand, within AO356_20525 at 4580.753 kb on + strand, within AO356_20525 at 4580.753 kb on + strand, within AO356_20525 at 4580.754 kb on - strand, within AO356_20525 at 4580.754 kb on - strand, within AO356_20525 at 4580.754 kb on - strand, within AO356_20525 at 4580.754 kb on - strand, within AO356_20525 at 4580.754 kb on - strand, within AO356_20525 at 4580.762 kb on + strand, within AO356_20525 at 4580.762 kb on + strand, within AO356_20525 at 4580.763 kb on - strand, within AO356_20525 at 4580.763 kb on - strand, within AO356_20525
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.08 mM remove 4,578,642 + AO356_20515 0.20 -2.3 4,578,664 + AO356_20515 0.22 -1.0 4,578,664 + AO356_20515 0.22 +0.7 4,578,701 + AO356_20515 0.24 +0.1 4,578,729 + AO356_20515 0.27 +1.8 4,578,774 + AO356_20515 0.30 -1.4 4,578,852 + AO356_20515 0.37 +1.1 4,578,852 + AO356_20515 0.37 -0.6 4,578,895 + AO356_20515 0.40 +0.2 4,578,920 + AO356_20515 0.42 +1.2 4,578,927 + AO356_20515 0.43 -0.4 4,578,927 + AO356_20515 0.43 -0.4 4,578,927 + AO356_20515 0.43 -1.3 4,578,951 + AO356_20515 0.44 -2.5 4,578,971 + AO356_20515 0.46 -0.8 4,579,318 + AO356_20515 0.74 -1.7 4,579,318 + AO356_20515 0.74 -1.3 4,579,318 + AO356_20515 0.74 -1.8 4,579,318 + AO356_20515 0.74 +0.2 4,579,318 + AO356_20515 0.74 -0.5 4,579,318 + AO356_20515 0.74 +0.4 4,579,319 - AO356_20515 0.74 -2.5 4,579,323 - AO356_20515 0.74 -1.9 4,579,363 - AO356_20515 0.77 -0.1 4,579,363 - AO356_20515 0.77 -0.5 4,579,587 + +0.2 4,579,587 + -0.1 4,579,588 - -2.2 4,579,588 - -2.6 4,579,594 + -0.8 4,579,594 + +0.2 4,579,594 + +0.4 4,579,595 - +0.5 4,579,612 - -1.7 4,579,815 - AO356_20520 0.39 +0.2 4,579,815 - AO356_20520 0.39 -2.6 4,579,935 + AO356_20520 0.66 -0.8 4,580,161 + -1.7 4,580,161 + +1.3 4,580,162 - -1.7 4,580,162 - -0.1 4,580,162 - -0.3 4,580,219 + +0.3 4,580,219 + +0.3 4,580,219 + +0.3 4,580,219 + +0.3 4,580,219 + +1.8 4,580,220 - -0.9 4,580,220 - +0.5 4,580,220 - +1.0 4,580,220 - +0.1 4,580,220 - +2.6 4,580,220 - -0.1 4,580,220 - +1.0 4,580,347 - AO356_20525 0.10 -0.3 4,580,377 + AO356_20525 0.11 +0.9 4,580,425 + AO356_20525 0.13 +0.3 4,580,571 + AO356_20525 0.19 +0.0 4,580,600 + AO356_20525 0.20 +1.1 4,580,600 + AO356_20525 0.20 -0.4 4,580,608 + AO356_20525 0.20 +0.3 4,580,609 - AO356_20525 0.20 +0.6 4,580,627 + AO356_20525 0.21 +0.6 4,580,627 + AO356_20525 0.21 +0.6 4,580,627 + AO356_20525 0.21 -1.5 4,580,628 - AO356_20525 0.21 -0.9 4,580,722 + AO356_20525 0.25 -0.9 4,580,726 + AO356_20525 0.25 +1.0 4,580,726 + AO356_20525 0.25 -1.1 4,580,727 - AO356_20525 0.25 -0.2 4,580,753 + AO356_20525 0.26 +0.0 4,580,753 + AO356_20525 0.26 +0.3 4,580,754 - AO356_20525 0.26 -0.1 4,580,754 - AO356_20525 0.26 +0.4 4,580,754 - AO356_20525 0.26 +0.1 4,580,754 - AO356_20525 0.26 +0.5 4,580,754 - AO356_20525 0.26 +0.7 4,580,762 + AO356_20525 0.26 +1.9 4,580,762 + AO356_20525 0.26 +0.3 4,580,763 - AO356_20525 0.26 -0.6 4,580,763 - AO356_20525 0.26 +0.1
Or see this region's nucleotide sequence