Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_20520

Experiment: Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_20515 and AO356_20520 overlap by 4 nucleotidesAO356_20520 and AO356_20525 are separated by 6 nucleotides AO356_20515: AO356_20515 - late control protein, at 4,578,395 to 4,579,645 _20515 AO356_20520: AO356_20520 - oxidoreductase, at 4,579,642 to 4,580,082 _20520 AO356_20525: AO356_20525 - hypothetical protein, at 4,580,089 to 4,582,632 _20525 Position (kb) 4579 4580 4581Strain fitness (log2 ratio) -2 -1 0 1 2at 4578.642 kb on + strand, within AO356_20515at 4578.664 kb on + strand, within AO356_20515at 4578.664 kb on + strand, within AO356_20515at 4578.701 kb on + strand, within AO356_20515at 4578.729 kb on + strand, within AO356_20515at 4578.774 kb on + strand, within AO356_20515at 4578.852 kb on + strand, within AO356_20515at 4578.852 kb on + strand, within AO356_20515at 4578.895 kb on + strand, within AO356_20515at 4578.920 kb on + strand, within AO356_20515at 4578.927 kb on + strand, within AO356_20515at 4578.927 kb on + strand, within AO356_20515at 4578.927 kb on + strand, within AO356_20515at 4578.951 kb on + strand, within AO356_20515at 4578.971 kb on + strand, within AO356_20515at 4579.318 kb on + strand, within AO356_20515at 4579.318 kb on + strand, within AO356_20515at 4579.318 kb on + strand, within AO356_20515at 4579.318 kb on + strand, within AO356_20515at 4579.318 kb on + strand, within AO356_20515at 4579.318 kb on + strand, within AO356_20515at 4579.319 kb on - strand, within AO356_20515at 4579.323 kb on - strand, within AO356_20515at 4579.363 kb on - strand, within AO356_20515at 4579.363 kb on - strand, within AO356_20515at 4579.587 kb on + strandat 4579.587 kb on + strandat 4579.588 kb on - strandat 4579.588 kb on - strandat 4579.594 kb on + strandat 4579.594 kb on + strandat 4579.594 kb on + strandat 4579.595 kb on - strandat 4579.612 kb on - strandat 4579.815 kb on - strand, within AO356_20520at 4579.815 kb on - strand, within AO356_20520at 4579.935 kb on + strand, within AO356_20520at 4580.161 kb on + strandat 4580.161 kb on + strandat 4580.162 kb on - strandat 4580.162 kb on - strandat 4580.162 kb on - strandat 4580.219 kb on + strandat 4580.219 kb on + strandat 4580.219 kb on + strandat 4580.219 kb on + strandat 4580.219 kb on + strandat 4580.220 kb on - strandat 4580.220 kb on - strandat 4580.220 kb on - strandat 4580.220 kb on - strandat 4580.220 kb on - strandat 4580.220 kb on - strandat 4580.220 kb on - strandat 4580.347 kb on - strand, within AO356_20525at 4580.377 kb on + strand, within AO356_20525at 4580.425 kb on + strand, within AO356_20525at 4580.571 kb on + strand, within AO356_20525at 4580.600 kb on + strand, within AO356_20525at 4580.600 kb on + strand, within AO356_20525at 4580.608 kb on + strand, within AO356_20525at 4580.609 kb on - strand, within AO356_20525at 4580.627 kb on + strand, within AO356_20525at 4580.627 kb on + strand, within AO356_20525at 4580.627 kb on + strand, within AO356_20525at 4580.628 kb on - strand, within AO356_20525at 4580.722 kb on + strand, within AO356_20525at 4580.726 kb on + strand, within AO356_20525at 4580.726 kb on + strand, within AO356_20525at 4580.727 kb on - strand, within AO356_20525at 4580.753 kb on + strand, within AO356_20525at 4580.753 kb on + strand, within AO356_20525at 4580.754 kb on - strand, within AO356_20525at 4580.754 kb on - strand, within AO356_20525at 4580.754 kb on - strand, within AO356_20525at 4580.754 kb on - strand, within AO356_20525at 4580.754 kb on - strand, within AO356_20525at 4580.762 kb on + strand, within AO356_20525at 4580.762 kb on + strand, within AO356_20525at 4580.763 kb on - strand, within AO356_20525at 4580.763 kb on - strand, within AO356_20525

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.08 mM
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4,578,642 + AO356_20515 0.20 -2.3
4,578,664 + AO356_20515 0.22 -1.0
4,578,664 + AO356_20515 0.22 +0.7
4,578,701 + AO356_20515 0.24 +0.1
4,578,729 + AO356_20515 0.27 +1.8
4,578,774 + AO356_20515 0.30 -1.4
4,578,852 + AO356_20515 0.37 +1.1
4,578,852 + AO356_20515 0.37 -0.6
4,578,895 + AO356_20515 0.40 +0.2
4,578,920 + AO356_20515 0.42 +1.2
4,578,927 + AO356_20515 0.43 -0.4
4,578,927 + AO356_20515 0.43 -0.4
4,578,927 + AO356_20515 0.43 -1.3
4,578,951 + AO356_20515 0.44 -2.5
4,578,971 + AO356_20515 0.46 -0.8
4,579,318 + AO356_20515 0.74 -1.7
4,579,318 + AO356_20515 0.74 -1.3
4,579,318 + AO356_20515 0.74 -1.8
4,579,318 + AO356_20515 0.74 +0.2
4,579,318 + AO356_20515 0.74 -0.5
4,579,318 + AO356_20515 0.74 +0.4
4,579,319 - AO356_20515 0.74 -2.5
4,579,323 - AO356_20515 0.74 -1.9
4,579,363 - AO356_20515 0.77 -0.1
4,579,363 - AO356_20515 0.77 -0.5
4,579,587 + +0.2
4,579,587 + -0.1
4,579,588 - -2.2
4,579,588 - -2.6
4,579,594 + -0.8
4,579,594 + +0.2
4,579,594 + +0.4
4,579,595 - +0.5
4,579,612 - -1.7
4,579,815 - AO356_20520 0.39 +0.2
4,579,815 - AO356_20520 0.39 -2.6
4,579,935 + AO356_20520 0.66 -0.8
4,580,161 + -1.7
4,580,161 + +1.3
4,580,162 - -1.7
4,580,162 - -0.1
4,580,162 - -0.3
4,580,219 + +0.3
4,580,219 + +0.3
4,580,219 + +0.3
4,580,219 + +0.3
4,580,219 + +1.8
4,580,220 - -0.9
4,580,220 - +0.5
4,580,220 - +1.0
4,580,220 - +0.1
4,580,220 - +2.6
4,580,220 - -0.1
4,580,220 - +1.0
4,580,347 - AO356_20525 0.10 -0.3
4,580,377 + AO356_20525 0.11 +0.9
4,580,425 + AO356_20525 0.13 +0.3
4,580,571 + AO356_20525 0.19 +0.0
4,580,600 + AO356_20525 0.20 +1.1
4,580,600 + AO356_20525 0.20 -0.4
4,580,608 + AO356_20525 0.20 +0.3
4,580,609 - AO356_20525 0.20 +0.6
4,580,627 + AO356_20525 0.21 +0.6
4,580,627 + AO356_20525 0.21 +0.6
4,580,627 + AO356_20525 0.21 -1.5
4,580,628 - AO356_20525 0.21 -0.9
4,580,722 + AO356_20525 0.25 -0.9
4,580,726 + AO356_20525 0.25 +1.0
4,580,726 + AO356_20525 0.25 -1.1
4,580,727 - AO356_20525 0.25 -0.2
4,580,753 + AO356_20525 0.26 +0.0
4,580,753 + AO356_20525 0.26 +0.3
4,580,754 - AO356_20525 0.26 -0.1
4,580,754 - AO356_20525 0.26 +0.4
4,580,754 - AO356_20525 0.26 +0.1
4,580,754 - AO356_20525 0.26 +0.5
4,580,754 - AO356_20525 0.26 +0.7
4,580,762 + AO356_20525 0.26 +1.9
4,580,762 + AO356_20525 0.26 +0.3
4,580,763 - AO356_20525 0.26 -0.6
4,580,763 - AO356_20525 0.26 +0.1

Or see this region's nucleotide sequence