Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_4717

Experiment: epiphytic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Lima bean
5,589,280	-				-1.0
5,589,664	-		Psyr_4716	0.52	-0.2
5,589,756	+		Psyr_4716	0.67	+0.8
5,589,776	+		Psyr_4716	0.70	-1.4
5,589,776	+		Psyr_4716	0.70	-0.2
5,589,776	+		Psyr_4716	0.70	-1.7
5,589,776	+		Psyr_4716	0.70	-0.6
5,589,776	+		Psyr_4716	0.70	+0.6
5,589,776	+		Psyr_4716	0.70	+0.4
5,589,777	-		Psyr_4716	0.70	-2.9
5,589,985	-				-2.6
5,590,015	+				-0.1
5,590,016	-				+0.3
5,590,016	-				+0.6
5,590,016	-				+0.7
5,590,016	-				+3.6
5,590,016	-				-3.1
5,590,083	-				+0.3
5,590,158	-				+0.3
5,590,225	-				+0.8
5,590,241	+				+2.8
5,590,242	-				+0.3
5,590,341	+		Psyr_4717	0.12	-3.6
5,590,341	+		Psyr_4717	0.12	-1.6
5,590,341	+		Psyr_4717	0.12	-0.9
5,590,341	+		Psyr_4717	0.12	-1.0
5,590,341	+		Psyr_4717	0.12	+0.1
5,590,342	-		Psyr_4717	0.12	-2.9
5,590,342	-		Psyr_4717	0.12	-1.2
5,590,342	-		Psyr_4717	0.12	-3.3
5,590,342	-		Psyr_4717	0.12	+1.7
5,590,342	-		Psyr_4717	0.12	+1.5
5,590,517	-		Psyr_4717	0.32	-1.3
5,590,575	-		Psyr_4717	0.39	+1.8
5,590,655	+		Psyr_4717	0.48	+0.7
5,590,655	+		Psyr_4717	0.48	+0.4
5,590,655	+		Psyr_4717	0.48	-0.5
5,590,655	+		Psyr_4717	0.48	+0.5
5,590,655	+		Psyr_4717	0.48	+3.3
5,590,655	+		Psyr_4717	0.48	+3.8
5,590,656	-		Psyr_4717	0.48	+0.2
5,590,656	-		Psyr_4717	0.48	-1.4
5,590,656	-		Psyr_4717	0.48	-3.3
5,590,656	-		Psyr_4717	0.48	+1.5
5,590,659	+		Psyr_4717	0.49	+0.6
5,590,659	+		Psyr_4717	0.49	+0.3
5,590,660	-		Psyr_4717	0.49	+0.1
5,590,660	-		Psyr_4717	0.49	+0.0
5,590,660	-		Psyr_4717	0.49	-0.5
5,590,660	-		Psyr_4717	0.49	-1.6
5,590,660	-		Psyr_4717	0.49	-0.1
5,590,662	+		Psyr_4717	0.49	-0.2
5,590,662	+		Psyr_4717	0.49	+1.1
5,590,662	+		Psyr_4717	0.49	-0.2
5,590,761	+		Psyr_4717	0.60	-2.5
5,590,761	+		Psyr_4717	0.60	-1.0
5,590,761	+		Psyr_4717	0.60	-1.7
5,590,762	-		Psyr_4717	0.61	+2.6
5,590,762	-		Psyr_4717	0.61	+3.4
5,590,861	-		Psyr_4717	0.72	+0.2
5,590,873	-		Psyr_4717	0.74	+0.6
5,590,873	-		Psyr_4717	0.74	+0.5
5,590,873	-		Psyr_4717	0.74	+1.0
5,590,911	+		Psyr_4717	0.78	+0.9
5,590,911	+		Psyr_4717	0.78	-3.6
5,590,911	+		Psyr_4717	0.78	+0.5
5,590,911	+		Psyr_4717	0.78	-0.2
5,590,911	+		Psyr_4717	0.78	-1.9
5,590,912	-		Psyr_4717	0.78	-0.7
5,590,912	-		Psyr_4717	0.78	-1.2
5,590,912	-		Psyr_4717	0.78	-3.5
5,590,912	-		Psyr_4717	0.78	-0.2
5,590,912	-		Psyr_4717	0.78	-2.8
5,590,912	-		Psyr_4717	0.78	-0.7
5,590,912	-		Psyr_4717	0.78	-2.1
5,590,912	-		Psyr_4717	0.78	+2.2
5,591,097	+				+0.6
5,591,128	+				+1.7
5,591,170	+				-0.3
5,591,189	+				-3.5
5,591,189	+				+1.1
5,591,190	-				-3.8
5,591,207	+				+0.8
5,591,207	+				+1.3
5,591,207	+				+0.5
5,591,207	+				+2.4
5,591,207	+				+0.3
5,591,207	+				+1.8
5,591,207	+				+1.3
5,591,207	+				-0.7
5,591,207	+				+0.0
5,591,207	+				+0.2
5,591,207	+				+1.7
5,591,207	+				-0.5
5,591,207	+				+1.5
5,591,207	+				+1.6
5,591,207	+				-0.6
5,591,207	+				-0.5
5,591,207	+				-2.2
5,591,207	+				-0.5
5,591,207	+				-2.4
5,591,207	+				-2.0
5,591,207	+				-0.9
5,591,207	+				-1.3
5,591,207	+				-2.9
5,591,207	+				+1.8
5,591,207	+				+0.1
5,591,207	+				-3.4
5,591,207	+				+2.2
5,591,207	+				+2.1
5,591,207	+				-3.7
5,591,207	+				+0.8
5,591,207	+				+0.3
5,591,207	+				+1.1
5,591,207	+				-0.6
5,591,207	+				-0.0
5,591,207	+				-1.0
5,591,207	+				+2.1
5,591,207	+				+0.8
5,591,207	+				-1.5
5,591,207	+				+0.7
5,591,207	+				+0.3
5,591,207	+				+2.4
5,591,208	-				-0.9
5,591,208	-				-0.0
5,591,208	-				-0.1
5,591,208	-				-3.1
5,591,208	-				-1.0
5,591,208	-				+0.5
5,591,208	-				-0.5
5,591,208	-				+0.7
5,591,208	-				-1.2
5,591,208	-				+2.0
5,591,208	-				+0.7
5,591,208	-				-0.3
5,591,208	-				+1.8
5,591,208	-				+1.3
5,591,208	-				+0.8
5,591,208	-				-0.1
5,591,208	-				-1.5
5,591,208	-				-0.2
5,591,208	-				+0.6
5,591,208	-				+0.8
5,591,208	-				+0.3
5,591,208	-				+0.4
5,591,208	-				+0.0
5,591,208	-				-1.6
5,591,208	-				+1.1
5,591,208	-				-0.4
5,591,208	-				-0.6
5,591,208	-				-1.2
5,591,208	-				-0.3
5,591,208	-				+0.5
5,591,227	+				-0.4
5,591,227	+				+1.8
5,591,228	-				+0.0
5,591,228	-				+0.6
5,591,228	-				-1.1
5,591,228	-				-0.9
5,591,228	-				-1.0
5,591,228	-				+0.5
5,591,232	+				+2.0
5,591,232	+				-2.2
5,591,232	+				-1.0
5,591,233	-				-3.3
5,591,233	-				+1.1
5,591,368	+		Psyr_4718	0.13	-0.3
5,591,369	-		Psyr_4718	0.13	-0.5
5,591,402	-		Psyr_4718	0.16	+2.9
5,591,583	+		Psyr_4718	0.31	-1.0
5,591,583	+		Psyr_4718	0.31	+0.4
5,591,583	+		Psyr_4718	0.31	+1.5
5,591,583	+		Psyr_4718	0.31	-2.1
5,591,583	+		Psyr_4718	0.31	+0.9
5,591,583	+		Psyr_4718	0.31	-0.5
5,591,584	-		Psyr_4718	0.31	-0.5
5,591,584	-		Psyr_4718	0.31	+0.5
5,591,584	-		Psyr_4718	0.31	+2.0
5,591,584	-		Psyr_4718	0.31	-2.2
5,591,622	+		Psyr_4718	0.34	+0.7
5,591,622	+		Psyr_4718	0.34	+2.4
5,591,622	+		Psyr_4718	0.34	-1.0
5,591,622	+		Psyr_4718	0.34	+1.0
5,591,622	+		Psyr_4718	0.34	+1.0
5,591,622	+		Psyr_4718	0.34	+2.4
5,591,622	+		Psyr_4718	0.34	+0.5
5,591,623	-		Psyr_4718	0.35	-1.3
5,591,623	-		Psyr_4718	0.35	-1.0
5,591,637	+		Psyr_4718	0.36	-0.0
5,591,778	+		Psyr_4718	0.47	-1.5
5,591,778	+		Psyr_4718	0.47	+1.1
5,591,778	+		Psyr_4718	0.47	+0.2
5,591,778	+		Psyr_4718	0.47	+0.3
5,591,778	+		Psyr_4718	0.47	+0.7
5,591,779	-		Psyr_4718	0.48	-0.7
5,591,779	-		Psyr_4718	0.48	-0.5
5,591,779	-		Psyr_4718	0.48	+0.9
5,591,779	-		Psyr_4718	0.48	+0.3
5,591,779	-		Psyr_4718	0.48	+2.4
5,591,779	-		Psyr_4718	0.48	-0.3
5,591,779	-		Psyr_4718	0.48	-1.6
5,591,779	-		Psyr_4718	0.48	+0.4
5,591,779	-		Psyr_4718	0.48	-0.8
5,591,779	-		Psyr_4718	0.48	-3.3
5,591,779	-		Psyr_4718	0.48	+2.2
5,592,076	+		Psyr_4718	0.72	-0.8
5,592,076	+		Psyr_4718	0.72	+0.8