Experiment: epiphytic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4463 and Psyr_4464 are separated by 143 nucleotides Psyr_4464 and Psyr_4465 overlap by 4 nucleotides Psyr_4465 and Psyr_4466 are separated by 269 nucleotides
Psyr_4463: Psyr_4463 - Protein of unknown function DUF193, at 5,325,910 to 5,326,407
_4463
Psyr_4464: Psyr_4464 - lipoprotein, putative, at 5,326,551 to 5,327,000
_4464
Psyr_4465: Psyr_4465 - conserved domain protein, at 5,326,997 to 5,327,650
_4465
Psyr_4466: Psyr_4466 - Thioredoxin, at 5,327,920 to 5,328,792
_4466
Position (kb) 5326
5327
5328 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5326.005 kb on - strand, within Psyr_4463 at 5326.005 kb on - strand, within Psyr_4463 at 5326.005 kb on - strand, within Psyr_4463 at 5326.005 kb on - strand, within Psyr_4463 at 5326.005 kb on - strand, within Psyr_4463 at 5326.301 kb on - strand, within Psyr_4463 at 5326.301 kb on - strand, within Psyr_4463 at 5326.450 kb on + strand at 5326.450 kb on + strand at 5326.450 kb on + strand at 5326.450 kb on + strand at 5326.450 kb on + strand at 5326.451 kb on - strand at 5326.451 kb on - strand at 5326.451 kb on - strand at 5326.451 kb on - strand at 5326.452 kb on + strand at 5326.452 kb on + strand at 5326.452 kb on + strand at 5326.452 kb on + strand at 5326.453 kb on - strand at 5326.453 kb on - strand at 5326.454 kb on + strand at 5326.454 kb on + strand at 5326.454 kb on + strand at 5326.454 kb on + strand at 5326.454 kb on + strand at 5326.454 kb on + strand at 5326.454 kb on + strand at 5326.454 kb on + strand at 5326.454 kb on + strand at 5326.454 kb on + strand at 5326.454 kb on + strand at 5326.455 kb on - strand at 5326.455 kb on - strand at 5326.455 kb on - strand at 5326.455 kb on - strand at 5326.455 kb on - strand at 5326.455 kb on - strand at 5326.455 kb on - strand at 5326.455 kb on - strand at 5326.466 kb on - strand at 5326.466 kb on - strand at 5326.466 kb on - strand at 5326.497 kb on + strand at 5326.497 kb on + strand at 5326.498 kb on - strand at 5326.498 kb on - strand at 5326.498 kb on - strand at 5326.558 kb on + strand at 5327.168 kb on + strand, within Psyr_4465 at 5327.277 kb on + strand, within Psyr_4465 at 5327.456 kb on + strand, within Psyr_4465 at 5327.556 kb on - strand, within Psyr_4465 at 5327.633 kb on + strand at 5327.659 kb on + strand at 5327.659 kb on + strand at 5327.659 kb on + strand at 5327.659 kb on + strand at 5327.660 kb on - strand at 5327.660 kb on - strand at 5327.682 kb on - strand at 5327.695 kb on - strand at 5327.733 kb on + strand at 5327.848 kb on + strand at 5327.884 kb on + strand at 5327.885 kb on - strand at 5327.886 kb on + strand at 5327.886 kb on + strand at 5327.886 kb on + strand at 5327.886 kb on + strand at 5327.886 kb on + strand at 5327.886 kb on + strand at 5327.887 kb on - strand at 5327.887 kb on - strand at 5327.887 kb on - strand at 5327.887 kb on - strand at 5327.887 kb on - strand at 5327.887 kb on - strand at 5327.887 kb on - strand at 5327.939 kb on - strand at 5327.939 kb on - strand at 5327.939 kb on - strand at 5327.939 kb on - strand at 5327.939 kb on - strand at 5328.082 kb on + strand, within Psyr_4466 at 5328.082 kb on + strand, within Psyr_4466 at 5328.397 kb on + strand, within Psyr_4466 at 5328.631 kb on + strand, within Psyr_4466
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Lima bean remove 5,326,005 - Psyr_4463 0.19 -1.0 5,326,005 - Psyr_4463 0.19 +0.2 5,326,005 - Psyr_4463 0.19 +2.6 5,326,005 - Psyr_4463 0.19 +1.0 5,326,005 - Psyr_4463 0.19 -1.2 5,326,301 - Psyr_4463 0.79 -0.2 5,326,301 - Psyr_4463 0.79 +1.1 5,326,450 + +1.3 5,326,450 + -0.6 5,326,450 + -1.0 5,326,450 + -0.1 5,326,450 + -0.3 5,326,451 - +0.6 5,326,451 - +3.9 5,326,451 - -0.4 5,326,451 - +1.2 5,326,452 + +3.6 5,326,452 + -0.2 5,326,452 + -3.0 5,326,452 + +0.2 5,326,453 - +1.6 5,326,453 - +1.3 5,326,454 + +0.9 5,326,454 + -3.1 5,326,454 + -0.5 5,326,454 + -3.3 5,326,454 + -3.2 5,326,454 + -2.8 5,326,454 + +0.6 5,326,454 + +0.4 5,326,454 + -0.5 5,326,454 + -3.0 5,326,454 + +0.9 5,326,455 - +0.1 5,326,455 - +0.2 5,326,455 - +1.4 5,326,455 - +1.6 5,326,455 - +2.9 5,326,455 - -0.4 5,326,455 - +0.2 5,326,455 - +0.6 5,326,466 - +0.0 5,326,466 - -1.5 5,326,466 - -0.7 5,326,497 + +1.0 5,326,497 + -0.4 5,326,498 - +2.4 5,326,498 - -1.7 5,326,498 - +0.5 5,326,558 + +0.0 5,327,168 + Psyr_4465 0.26 -0.1 5,327,277 + Psyr_4465 0.43 +1.0 5,327,456 + Psyr_4465 0.70 +0.6 5,327,556 - Psyr_4465 0.85 -1.3 5,327,633 + -0.2 5,327,659 + +0.1 5,327,659 + -2.4 5,327,659 + -0.4 5,327,659 + -2.9 5,327,660 - +1.4 5,327,660 - +2.8 5,327,682 - -2.2 5,327,695 - -0.3 5,327,733 + -0.7 5,327,848 + -0.7 5,327,884 + -1.2 5,327,885 - -3.3 5,327,886 + -0.3 5,327,886 + +0.5 5,327,886 + +0.5 5,327,886 + -0.3 5,327,886 + -2.6 5,327,886 + +1.2 5,327,887 - +0.8 5,327,887 - +0.6 5,327,887 - -0.8 5,327,887 - -2.2 5,327,887 - +0.0 5,327,887 - -2.1 5,327,887 - -2.4 5,327,939 - +0.5 5,327,939 - +3.4 5,327,939 - +1.5 5,327,939 - +2.0 5,327,939 - +1.0 5,328,082 + Psyr_4466 0.19 +1.0 5,328,082 + Psyr_4466 0.19 +2.6 5,328,397 + Psyr_4466 0.55 +1.1 5,328,631 + Psyr_4466 0.81 +0.6
Or see this region's nucleotide sequence