Experiment: epiphytic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4314 and Psyr_4315 are separated by 20 nucleotides Psyr_4315 and Psyr_4316 are separated by 236 nucleotides Psyr_4316 and Psyr_4317 are separated by 74 nucleotides
Psyr_4314: Psyr_4314 - Beta-ketoacyl synthase:Beta-ketoacyl synthase:Phosphopantetheine-binding protein, at 5,154,317 to 5,164,012
_4314
Psyr_4315: Psyr_4315 - Asparagine synthase, glutamine-hydrolyzing, at 5,164,033 to 5,166,009
_4315
Psyr_4316: Psyr_4316 - conserved hypothetical protein, at 5,166,246 to 5,166,491
_4316
Psyr_4317: Psyr_4317 - Probable taurine catabolism dioxygenase-like protein, at 5,166,566 to 5,167,579
_4317
Position (kb) 5164
5165
5166
5167 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 5163.078 kb on + strand at 5163.078 kb on + strand at 5163.078 kb on + strand at 5163.078 kb on + strand at 5163.078 kb on + strand at 5163.078 kb on + strand at 5163.078 kb on + strand at 5163.078 kb on + strand at 5163.078 kb on + strand at 5163.078 kb on + strand at 5163.078 kb on + strand at 5163.078 kb on + strand at 5163.078 kb on + strand at 5163.079 kb on - strand at 5163.079 kb on - strand at 5163.079 kb on - strand at 5163.079 kb on - strand at 5163.079 kb on - strand at 5163.079 kb on - strand at 5163.079 kb on - strand at 5163.082 kb on + strand at 5163.083 kb on - strand at 5163.083 kb on - strand at 5163.083 kb on - strand at 5163.083 kb on - strand at 5163.083 kb on - strand at 5163.100 kb on + strand at 5163.100 kb on + strand at 5163.101 kb on - strand at 5163.101 kb on - strand at 5163.196 kb on + strand at 5163.196 kb on + strand at 5163.197 kb on - strand at 5163.197 kb on - strand at 5163.197 kb on - strand at 5163.197 kb on - strand at 5163.213 kb on + strand at 5163.213 kb on + strand at 5163.214 kb on - strand at 5163.214 kb on - strand at 5163.214 kb on - strand at 5163.214 kb on - strand at 5163.214 kb on - strand at 5163.284 kb on + strand at 5163.285 kb on - strand at 5163.289 kb on - strand at 5163.313 kb on + strand at 5163.313 kb on + strand at 5163.313 kb on + strand at 5163.313 kb on + strand at 5163.313 kb on + strand at 5163.313 kb on + strand at 5163.314 kb on - strand at 5163.314 kb on - strand at 5163.314 kb on - strand at 5163.314 kb on - strand at 5163.314 kb on - strand at 5163.314 kb on - strand at 5163.315 kb on + strand at 5163.315 kb on + strand at 5163.315 kb on + strand at 5163.315 kb on + strand at 5163.315 kb on + strand at 5163.315 kb on + strand at 5163.315 kb on + strand at 5163.315 kb on + strand at 5163.316 kb on - strand at 5163.316 kb on - strand at 5163.316 kb on - strand at 5163.332 kb on - strand at 5163.352 kb on + strand at 5163.353 kb on - strand at 5163.383 kb on + strand at 5163.383 kb on + strand at 5163.513 kb on + strand at 5163.514 kb on - strand at 5163.514 kb on - strand at 5163.516 kb on + strand at 5163.516 kb on + strand at 5163.516 kb on + strand at 5163.517 kb on - strand at 5163.565 kb on - strand at 5163.565 kb on - strand at 5163.565 kb on - strand at 5163.607 kb on - strand at 5163.607 kb on - strand at 5163.712 kb on + strand at 5163.712 kb on + strand at 5163.712 kb on + strand at 5163.712 kb on + strand at 5163.712 kb on + strand at 5163.712 kb on + strand at 5163.713 kb on - strand at 5163.713 kb on - strand at 5163.835 kb on + strand at 5163.886 kb on + strand at 5163.887 kb on - strand at 5163.907 kb on + strand at 5163.908 kb on - strand at 5163.908 kb on - strand at 5163.908 kb on - strand at 5163.932 kb on - strand at 5163.932 kb on - strand at 5163.932 kb on - strand at 5163.989 kb on + strand at 5163.989 kb on + strand at 5163.989 kb on + strand at 5163.989 kb on + strand at 5163.989 kb on + strand at 5163.990 kb on - strand at 5163.990 kb on - strand at 5163.990 kb on - strand at 5163.990 kb on - strand at 5163.990 kb on - strand at 5163.990 kb on - strand at 5163.990 kb on - strand at 5164.013 kb on - strand at 5164.068 kb on + strand at 5164.069 kb on - strand at 5164.089 kb on + strand at 5164.089 kb on + strand at 5164.091 kb on + strand at 5164.122 kb on + strand at 5164.148 kb on + strand at 5164.177 kb on + strand at 5164.177 kb on + strand at 5164.177 kb on + strand at 5164.340 kb on + strand, within Psyr_4315 at 5164.356 kb on + strand, within Psyr_4315 at 5164.356 kb on + strand, within Psyr_4315 at 5164.388 kb on + strand, within Psyr_4315 at 5164.406 kb on + strand, within Psyr_4315 at 5164.406 kb on + strand, within Psyr_4315 at 5164.406 kb on + strand, within Psyr_4315 at 5164.407 kb on - strand, within Psyr_4315 at 5164.407 kb on - strand, within Psyr_4315 at 5164.497 kb on + strand, within Psyr_4315 at 5164.515 kb on + strand, within Psyr_4315 at 5164.530 kb on + strand, within Psyr_4315 at 5164.558 kb on - strand, within Psyr_4315 at 5164.558 kb on - strand, within Psyr_4315 at 5164.604 kb on + strand, within Psyr_4315 at 5164.605 kb on - strand, within Psyr_4315 at 5164.605 kb on - strand, within Psyr_4315 at 5164.699 kb on + strand, within Psyr_4315 at 5164.797 kb on - strand, within Psyr_4315 at 5164.803 kb on - strand, within Psyr_4315 at 5164.897 kb on + strand, within Psyr_4315 at 5164.897 kb on + strand, within Psyr_4315 at 5164.967 kb on + strand, within Psyr_4315 at 5164.967 kb on + strand, within Psyr_4315 at 5164.967 kb on + strand, within Psyr_4315 at 5164.967 kb on + strand, within Psyr_4315 at 5164.967 kb on + strand, within Psyr_4315 at 5164.967 kb on + strand, within Psyr_4315 at 5164.968 kb on - strand, within Psyr_4315 at 5164.968 kb on - strand, within Psyr_4315 at 5164.968 kb on - strand, within Psyr_4315 at 5164.968 kb on - strand, within Psyr_4315 at 5164.968 kb on - strand, within Psyr_4315 at 5164.968 kb on - strand, within Psyr_4315 at 5164.968 kb on - strand, within Psyr_4315 at 5164.968 kb on - strand, within Psyr_4315 at 5164.968 kb on - strand, within Psyr_4315 at 5165.047 kb on - strand, within Psyr_4315 at 5165.128 kb on - strand, within Psyr_4315 at 5165.188 kb on - strand, within Psyr_4315 at 5165.225 kb on + strand, within Psyr_4315 at 5165.348 kb on + strand, within Psyr_4315 at 5165.349 kb on - strand, within Psyr_4315 at 5165.349 kb on - strand, within Psyr_4315 at 5165.349 kb on - strand, within Psyr_4315 at 5165.563 kb on - strand, within Psyr_4315 at 5165.600 kb on - strand, within Psyr_4315 at 5165.601 kb on + strand, within Psyr_4315 at 5165.601 kb on + strand, within Psyr_4315 at 5165.601 kb on + strand, within Psyr_4315 at 5165.601 kb on + strand, within Psyr_4315 at 5165.601 kb on + strand, within Psyr_4315 at 5165.602 kb on - strand, within Psyr_4315 at 5165.602 kb on - strand, within Psyr_4315 at 5165.605 kb on + strand, within Psyr_4315 at 5165.605 kb on + strand, within Psyr_4315 at 5165.605 kb on + strand, within Psyr_4315 at 5165.606 kb on - strand, within Psyr_4315 at 5165.606 kb on - strand, within Psyr_4315 at 5165.606 kb on - strand, within Psyr_4315 at 5165.606 kb on - strand, within Psyr_4315 at 5165.628 kb on - strand, within Psyr_4315 at 5165.758 kb on + strand, within Psyr_4315 at 5165.768 kb on + strand, within Psyr_4315 at 5165.768 kb on + strand, within Psyr_4315 at 5165.768 kb on + strand, within Psyr_4315 at 5165.768 kb on + strand, within Psyr_4315 at 5165.769 kb on - strand, within Psyr_4315 at 5165.769 kb on - strand, within Psyr_4315 at 5165.769 kb on - strand, within Psyr_4315 at 5165.769 kb on - strand, within Psyr_4315 at 5165.769 kb on - strand, within Psyr_4315 at 5165.772 kb on + strand, within Psyr_4315 at 5165.773 kb on - strand, within Psyr_4315 at 5165.773 kb on - strand, within Psyr_4315 at 5165.773 kb on - strand, within Psyr_4315 at 5165.774 kb on + strand, within Psyr_4315 at 5165.775 kb on - strand, within Psyr_4315 at 5165.775 kb on - strand, within Psyr_4315 at 5165.790 kb on - strand, within Psyr_4315 at 5165.790 kb on - strand, within Psyr_4315 at 5165.790 kb on - strand, within Psyr_4315 at 5165.853 kb on + strand at 5165.853 kb on + strand at 5165.854 kb on - strand at 5165.857 kb on + strand at 5165.894 kb on + strand at 5165.894 kb on + strand at 5165.894 kb on + strand at 5165.894 kb on + strand at 5165.894 kb on + strand at 5165.894 kb on + strand at 5165.895 kb on - strand at 5165.895 kb on - strand at 5165.895 kb on - strand at 5165.895 kb on - strand at 5165.940 kb on + strand at 5166.009 kb on + strand at 5166.032 kb on - strand at 5166.149 kb on + strand at 5166.152 kb on + strand at 5166.152 kb on + strand at 5166.206 kb on + strand at 5166.283 kb on - strand, within Psyr_4316 at 5166.287 kb on + strand, within Psyr_4316 at 5166.287 kb on + strand, within Psyr_4316 at 5166.288 kb on - strand, within Psyr_4316 at 5166.320 kb on + strand, within Psyr_4316 at 5166.369 kb on - strand, within Psyr_4316 at 5166.377 kb on + strand, within Psyr_4316 at 5166.378 kb on - strand, within Psyr_4316 at 5166.385 kb on - strand, within Psyr_4316 at 5166.494 kb on - strand at 5166.544 kb on - strand at 5166.609 kb on + strand at 5166.629 kb on - strand at 5166.666 kb on + strand at 5166.689 kb on - strand, within Psyr_4317 at 5166.691 kb on + strand, within Psyr_4317 at 5166.805 kb on - strand, within Psyr_4317 at 5166.900 kb on + strand, within Psyr_4317
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Lima bean remove 5,163,078 + +0.5 5,163,078 + -0.1 5,163,078 + -2.1 5,163,078 + -1.1 5,163,078 + +0.7 5,163,078 + -3.0 5,163,078 + +1.5 5,163,078 + -1.9 5,163,078 + +1.6 5,163,078 + +0.2 5,163,078 + +0.7 5,163,078 + +0.2 5,163,078 + +0.0 5,163,079 - +0.1 5,163,079 - -1.8 5,163,079 - +3.4 5,163,079 - +0.1 5,163,079 - +0.1 5,163,079 - +0.0 5,163,079 - -1.9 5,163,082 + +0.5 5,163,083 - +1.3 5,163,083 - -0.7 5,163,083 - +1.1 5,163,083 - -1.0 5,163,083 - +0.5 5,163,100 + +0.4 5,163,100 + +1.3 5,163,101 - -0.3 5,163,101 - -1.8 5,163,196 + +0.0 5,163,196 + -0.3 5,163,197 - +0.6 5,163,197 - -1.0 5,163,197 - +0.1 5,163,197 - +0.7 5,163,213 + +1.7 5,163,213 + +0.3 5,163,214 - -0.7 5,163,214 - +2.7 5,163,214 - +0.3 5,163,214 - -4.0 5,163,214 - +1.3 5,163,284 + +1.6 5,163,285 - -1.8 5,163,289 - -1.9 5,163,313 + -0.9 5,163,313 + +0.2 5,163,313 + +2.1 5,163,313 + -0.3 5,163,313 + -2.0 5,163,313 + -0.1 5,163,314 - -3.0 5,163,314 - +1.8 5,163,314 - +0.6 5,163,314 - -1.1 5,163,314 - -0.7 5,163,314 - -1.5 5,163,315 + -0.3 5,163,315 + +4.0 5,163,315 + -4.0 5,163,315 + +3.8 5,163,315 + -0.5 5,163,315 + +2.8 5,163,315 + -0.3 5,163,315 + -1.7 5,163,316 - -1.8 5,163,316 - +1.7 5,163,316 - +0.4 5,163,332 - -0.3 5,163,352 + +0.7 5,163,353 - -1.8 5,163,383 + -3.4 5,163,383 + +0.3 5,163,513 + +0.3 5,163,514 - -1.5 5,163,514 - +1.5 5,163,516 + -1.8 5,163,516 + +1.6 5,163,516 + -1.3 5,163,517 - -2.9 5,163,565 - -0.2 5,163,565 - +0.3 5,163,565 - +1.9 5,163,607 - -2.4 5,163,607 - -1.3 5,163,712 + +0.6 5,163,712 + +1.5 5,163,712 + -1.3 5,163,712 + +3.5 5,163,712 + -0.5 5,163,712 + -1.5 5,163,713 - -0.7 5,163,713 - -3.5 5,163,835 + +1.5 5,163,886 + +0.9 5,163,887 - +0.5 5,163,907 + -2.9 5,163,908 - -0.2 5,163,908 - -0.0 5,163,908 - -2.2 5,163,932 - -2.4 5,163,932 - -0.8 5,163,932 - -1.1 5,163,989 + +0.2 5,163,989 + -0.7 5,163,989 + +0.2 5,163,989 + +0.3 5,163,989 + -2.0 5,163,990 - -1.9 5,163,990 - -1.7 5,163,990 - +0.9 5,163,990 - +0.8 5,163,990 - +0.5 5,163,990 - -1.8 5,163,990 - -1.8 5,164,013 - +1.4 5,164,068 + -3.2 5,164,069 - +1.3 5,164,089 + +0.8 5,164,089 + +1.6 5,164,091 + +0.8 5,164,122 + +0.2 5,164,148 + +2.3 5,164,177 + +0.2 5,164,177 + +1.8 5,164,177 + -1.1 5,164,340 + Psyr_4315 0.16 +1.7 5,164,356 + Psyr_4315 0.16 -2.1 5,164,356 + Psyr_4315 0.16 -3.0 5,164,388 + Psyr_4315 0.18 -0.3 5,164,406 + Psyr_4315 0.19 +1.2 5,164,406 + Psyr_4315 0.19 -0.9 5,164,406 + Psyr_4315 0.19 -0.1 5,164,407 - Psyr_4315 0.19 +0.8 5,164,407 - Psyr_4315 0.19 +0.1 5,164,497 + Psyr_4315 0.23 -0.9 5,164,515 + Psyr_4315 0.24 +0.8 5,164,530 + Psyr_4315 0.25 -2.0 5,164,558 - Psyr_4315 0.27 -3.6 5,164,558 - Psyr_4315 0.27 -0.5 5,164,604 + Psyr_4315 0.29 -1.1 5,164,605 - Psyr_4315 0.29 +0.9 5,164,605 - Psyr_4315 0.29 +2.0 5,164,699 + Psyr_4315 0.34 +3.3 5,164,797 - Psyr_4315 0.39 -1.5 5,164,803 - Psyr_4315 0.39 -0.9 5,164,897 + Psyr_4315 0.44 -2.6 5,164,897 + Psyr_4315 0.44 +1.7 5,164,967 + Psyr_4315 0.47 -0.7 5,164,967 + Psyr_4315 0.47 -1.3 5,164,967 + Psyr_4315 0.47 -0.3 5,164,967 + Psyr_4315 0.47 +0.8 5,164,967 + Psyr_4315 0.47 -2.7 5,164,967 + Psyr_4315 0.47 +0.3 5,164,968 - Psyr_4315 0.47 -1.9 5,164,968 - Psyr_4315 0.47 +0.3 5,164,968 - Psyr_4315 0.47 -1.4 5,164,968 - Psyr_4315 0.47 +1.1 5,164,968 - Psyr_4315 0.47 +0.8 5,164,968 - Psyr_4315 0.47 -3.3 5,164,968 - Psyr_4315 0.47 +5.2 5,164,968 - Psyr_4315 0.47 +2.7 5,164,968 - Psyr_4315 0.47 -1.5 5,165,047 - Psyr_4315 0.51 +2.9 5,165,128 - Psyr_4315 0.55 +2.6 5,165,188 - Psyr_4315 0.58 +1.4 5,165,225 + Psyr_4315 0.60 +1.3 5,165,348 + Psyr_4315 0.67 +0.9 5,165,349 - Psyr_4315 0.67 -2.1 5,165,349 - Psyr_4315 0.67 +0.0 5,165,349 - Psyr_4315 0.67 -0.7 5,165,563 - Psyr_4315 0.77 +0.4 5,165,600 - Psyr_4315 0.79 -2.8 5,165,601 + Psyr_4315 0.79 -0.4 5,165,601 + Psyr_4315 0.79 -1.7 5,165,601 + Psyr_4315 0.79 -3.1 5,165,601 + Psyr_4315 0.79 +0.2 5,165,601 + Psyr_4315 0.79 -1.0 5,165,602 - Psyr_4315 0.79 -2.7 5,165,602 - Psyr_4315 0.79 -2.2 5,165,605 + Psyr_4315 0.80 -2.5 5,165,605 + Psyr_4315 0.80 +0.6 5,165,605 + Psyr_4315 0.80 +0.8 5,165,606 - Psyr_4315 0.80 +0.7 5,165,606 - Psyr_4315 0.80 +2.2 5,165,606 - Psyr_4315 0.80 +3.3 5,165,606 - Psyr_4315 0.80 +0.7 5,165,628 - Psyr_4315 0.81 +5.0 5,165,758 + Psyr_4315 0.87 -2.5 5,165,768 + Psyr_4315 0.88 +2.0 5,165,768 + Psyr_4315 0.88 +0.9 5,165,768 + Psyr_4315 0.88 +0.3 5,165,768 + Psyr_4315 0.88 +0.8 5,165,769 - Psyr_4315 0.88 -1.8 5,165,769 - Psyr_4315 0.88 +3.0 5,165,769 - Psyr_4315 0.88 -1.5 5,165,769 - Psyr_4315 0.88 +1.2 5,165,769 - Psyr_4315 0.88 -0.3 5,165,772 + Psyr_4315 0.88 -0.4 5,165,773 - Psyr_4315 0.88 -1.0 5,165,773 - Psyr_4315 0.88 +1.1 5,165,773 - Psyr_4315 0.88 -0.9 5,165,774 + Psyr_4315 0.88 -3.2 5,165,775 - Psyr_4315 0.88 -0.1 5,165,775 - Psyr_4315 0.88 -2.1 5,165,790 - Psyr_4315 0.89 -0.3 5,165,790 - Psyr_4315 0.89 -0.9 5,165,790 - Psyr_4315 0.89 -0.5 5,165,853 + +2.1 5,165,853 + -1.3 5,165,854 - +1.1 5,165,857 + +2.1 5,165,894 + +0.8 5,165,894 + -0.0 5,165,894 + -2.7 5,165,894 + -1.8 5,165,894 + +0.1 5,165,894 + +0.8 5,165,895 - -1.3 5,165,895 - +1.5 5,165,895 - +0.3 5,165,895 - +1.5 5,165,940 + +1.7 5,166,009 + -2.7 5,166,032 - -3.5 5,166,149 + -2.2 5,166,152 + +1.1 5,166,152 + -1.5 5,166,206 + +2.3 5,166,283 - Psyr_4316 0.15 -0.7 5,166,287 + Psyr_4316 0.17 +0.4 5,166,287 + Psyr_4316 0.17 -1.1 5,166,288 - Psyr_4316 0.17 +1.4 5,166,320 + Psyr_4316 0.30 +0.7 5,166,369 - Psyr_4316 0.50 +0.6 5,166,377 + Psyr_4316 0.53 -3.5 5,166,378 - Psyr_4316 0.54 -0.7 5,166,385 - Psyr_4316 0.57 +1.0 5,166,494 - -0.7 5,166,544 - +0.1 5,166,609 + +0.9 5,166,629 - -1.9 5,166,666 + +2.1 5,166,689 - Psyr_4317 0.12 +0.8 5,166,691 + Psyr_4317 0.12 -2.8 5,166,805 - Psyr_4317 0.24 -2.7 5,166,900 + Psyr_4317 0.33 -1.3
Or see this region's nucleotide sequence