Strain Fitness in Marinobacter adhaerens HP15 around HP15_1551

Experiment: m.b. acetate 175 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1549 and HP15_1550 overlap by 1 nucleotidesHP15_1550 and HP15_1551 are separated by 20 nucleotidesHP15_1551 and HP15_1552 are separated by 110 nucleotidesHP15_1552 and HP15_1553 are separated by 28 nucleotides HP15_1549: HP15_1549 - major facilitator superfamily MFS_1, at 1,632,039 to 1,633,235 _1549 HP15_1550: HP15_1550 - protein/domain typically associated with flavoprotein oxygenase, DIM6/NTAB family protein, at 1,633,235 to 1,633,852 _1550 HP15_1551: HP15_1551 - transcriptional Regulator, LysR family protein, at 1,633,873 to 1,634,772 _1551 HP15_1552: HP15_1552 - conserved hypothetical protein, at 1,634,883 to 1,635,248 _1552 HP15_1553: HP15_1553 - transcription negative regulator, at 1,635,277 to 1,635,936 _1553 Position (kb) 1633 1634 1635Strain fitness (log2 ratio) -1 0 1at 1633.143 kb on + strandat 1633.254 kb on - strandat 1633.280 kb on + strandat 1633.289 kb on - strandat 1633.544 kb on - strand, within HP15_1550at 1633.621 kb on - strand, within HP15_1550at 1633.765 kb on - strand, within HP15_1550at 1633.863 kb on + strandat 1633.881 kb on + strandat 1633.888 kb on - strandat 1634.010 kb on - strand, within HP15_1551at 1634.064 kb on - strand, within HP15_1551at 1634.123 kb on - strand, within HP15_1551at 1634.216 kb on - strand, within HP15_1551at 1634.378 kb on - strand, within HP15_1551at 1634.389 kb on - strand, within HP15_1551at 1634.722 kb on - strandat 1634.748 kb on + strandat 1634.888 kb on - strandat 1634.948 kb on + strand, within HP15_1552at 1634.948 kb on + strand, within HP15_1552at 1634.950 kb on + strand, within HP15_1552at 1635.002 kb on - strand, within HP15_1552at 1635.176 kb on - strand, within HP15_1552at 1635.250 kb on - strandat 1635.252 kb on + strandat 1635.260 kb on - strandat 1635.260 kb on - strandat 1635.260 kb on - strandat 1635.338 kb on + strandat 1635.357 kb on + strand, within HP15_1553at 1635.357 kb on + strand, within HP15_1553at 1635.365 kb on - strand, within HP15_1553

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. acetate 175 mM
remove
1,633,143 + +0.7
1,633,254 - -0.1
1,633,280 + +0.1
1,633,289 - +0.6
1,633,544 - HP15_1550 0.50 +0.1
1,633,621 - HP15_1550 0.62 -0.1
1,633,765 - HP15_1550 0.86 +0.5
1,633,863 + -0.2
1,633,881 + +0.8
1,633,888 - +0.9
1,634,010 - HP15_1551 0.15 -0.9
1,634,064 - HP15_1551 0.21 +0.3
1,634,123 - HP15_1551 0.28 +0.6
1,634,216 - HP15_1551 0.38 -0.6
1,634,378 - HP15_1551 0.56 -1.3
1,634,389 - HP15_1551 0.57 -1.4
1,634,722 - +0.0
1,634,748 + -0.9
1,634,888 - +0.5
1,634,948 + HP15_1552 0.18 +0.8
1,634,948 + HP15_1552 0.18 +0.1
1,634,950 + HP15_1552 0.18 -0.5
1,635,002 - HP15_1552 0.33 +1.4
1,635,176 - HP15_1552 0.80 -0.0
1,635,250 - -0.2
1,635,252 + -0.4
1,635,260 - +1.6
1,635,260 - +0.6
1,635,260 - -1.3
1,635,338 + -0.7
1,635,357 + HP15_1553 0.12 +0.2
1,635,357 + HP15_1553 0.12 +1.2
1,635,365 - HP15_1553 0.13 +1.0

Or see this region's nucleotide sequence