Experiment: m.b. acetate 175 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1549 and HP15_1550 overlap by 1 nucleotides HP15_1550 and HP15_1551 are separated by 20 nucleotides HP15_1551 and HP15_1552 are separated by 110 nucleotides HP15_1552 and HP15_1553 are separated by 28 nucleotides
HP15_1549: HP15_1549 - major facilitator superfamily MFS_1, at 1,632,039 to 1,633,235
_1549
HP15_1550: HP15_1550 - protein/domain typically associated with flavoprotein oxygenase, DIM6/NTAB family protein, at 1,633,235 to 1,633,852
_1550
HP15_1551: HP15_1551 - transcriptional Regulator, LysR family protein, at 1,633,873 to 1,634,772
_1551
HP15_1552: HP15_1552 - conserved hypothetical protein, at 1,634,883 to 1,635,248
_1552
HP15_1553: HP15_1553 - transcription negative regulator, at 1,635,277 to 1,635,936
_1553
Position (kb)
1633
1634
1635 Strain fitness (log2 ratio)
-1
0
1 at 1633.143 kb on + strand at 1633.254 kb on - strand at 1633.280 kb on + strand at 1633.289 kb on - strand at 1633.544 kb on - strand, within HP15_1550 at 1633.621 kb on - strand, within HP15_1550 at 1633.765 kb on - strand, within HP15_1550 at 1633.863 kb on + strand at 1633.881 kb on + strand at 1633.888 kb on - strand at 1634.010 kb on - strand, within HP15_1551 at 1634.064 kb on - strand, within HP15_1551 at 1634.123 kb on - strand, within HP15_1551 at 1634.216 kb on - strand, within HP15_1551 at 1634.378 kb on - strand, within HP15_1551 at 1634.389 kb on - strand, within HP15_1551 at 1634.722 kb on - strand at 1634.748 kb on + strand at 1634.888 kb on - strand at 1634.948 kb on + strand, within HP15_1552 at 1634.948 kb on + strand, within HP15_1552 at 1634.950 kb on + strand, within HP15_1552 at 1635.002 kb on - strand, within HP15_1552 at 1635.176 kb on - strand, within HP15_1552 at 1635.250 kb on - strand at 1635.252 kb on + strand at 1635.260 kb on - strand at 1635.260 kb on - strand at 1635.260 kb on - strand at 1635.338 kb on + strand at 1635.357 kb on + strand, within HP15_1553 at 1635.357 kb on + strand, within HP15_1553 at 1635.365 kb on - strand, within HP15_1553
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 175 mM remove 1,633,143 + +0.7 1,633,254 - -0.1 1,633,280 + +0.1 1,633,289 - +0.6 1,633,544 - HP15_1550 0.50 +0.1 1,633,621 - HP15_1550 0.62 -0.1 1,633,765 - HP15_1550 0.86 +0.5 1,633,863 + -0.2 1,633,881 + +0.8 1,633,888 - +0.9 1,634,010 - HP15_1551 0.15 -0.9 1,634,064 - HP15_1551 0.21 +0.3 1,634,123 - HP15_1551 0.28 +0.6 1,634,216 - HP15_1551 0.38 -0.6 1,634,378 - HP15_1551 0.56 -1.3 1,634,389 - HP15_1551 0.57 -1.4 1,634,722 - +0.0 1,634,748 + -0.9 1,634,888 - +0.5 1,634,948 + HP15_1552 0.18 +0.8 1,634,948 + HP15_1552 0.18 +0.1 1,634,950 + HP15_1552 0.18 -0.5 1,635,002 - HP15_1552 0.33 +1.4 1,635,176 - HP15_1552 0.80 -0.0 1,635,250 - -0.2 1,635,252 + -0.4 1,635,260 - +1.6 1,635,260 - +0.6 1,635,260 - -1.3 1,635,338 + -0.7 1,635,357 + HP15_1553 0.12 +0.2 1,635,357 + HP15_1553 0.12 +1.2 1,635,365 - HP15_1553 0.13 +1.0
Or see this region's nucleotide sequence