Experiment: m.b. acetate 175 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1300 and HP15_1301 are separated by 27 nucleotides HP15_1301 and HP15_1302 overlap by 4 nucleotides HP15_1302 and HP15_1303 are separated by 69 nucleotides
HP15_1300: HP15_1300 - conserved hypothetical protein, at 1,360,745 to 1,361,845
_1300
HP15_1301: HP15_1301 - phosphatidylglycerophosphate synthase, at 1,361,873 to 1,362,427
_1301
HP15_1302: HP15_1302 - DNA replication initiation factor, at 1,362,424 to 1,363,122
_1302
HP15_1303: HP15_1303 - chromosome partitioning protein, ParA family, at 1,363,192 to 1,363,980
_1303
Position (kb)
1361
1362
1363 Strain fitness (log2 ratio)
-1
0
1
2 at 1361.703 kb on + strand, within HP15_1300 at 1361.703 kb on + strand, within HP15_1300 at 1362.202 kb on + strand, within HP15_1301 at 1362.202 kb on + strand, within HP15_1301 at 1362.316 kb on + strand, within HP15_1301 at 1362.321 kb on + strand, within HP15_1301 at 1363.165 kb on + strand at 1363.173 kb on - strand at 1363.232 kb on - strand at 1363.232 kb on - strand at 1363.289 kb on - strand, within HP15_1303 at 1363.361 kb on - strand, within HP15_1303 at 1363.393 kb on + strand, within HP15_1303
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 175 mM remove 1,361,703 + HP15_1300 0.87 +2.3 1,361,703 + HP15_1300 0.87 +0.9 1,362,202 + HP15_1301 0.59 +0.2 1,362,202 + HP15_1301 0.59 -1.3 1,362,316 + HP15_1301 0.80 -1.1 1,362,321 + HP15_1301 0.81 -0.7 1,363,165 + +0.3 1,363,173 - +0.7 1,363,232 - +0.2 1,363,232 - -0.1 1,363,289 - HP15_1303 0.12 +0.4 1,363,361 - HP15_1303 0.21 -0.6 1,363,393 + HP15_1303 0.25 -0.0
Or see this region's nucleotide sequence