Strain Fitness in Shewanella oneidensis MR-1 around SO2045

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
2,142,265	-	gloA	SO2044	0.17	+0.6
2,142,296	+	gloA	SO2044	0.25	+0.2
2,142,381	+	gloA	SO2044	0.45	+0.3
2,142,427	-	gloA	SO2044	0.56	-0.2
2,142,428	-	gloA	SO2044	0.57	+0.2
2,142,588	+				+0.7
2,142,594	-				+0.3
2,142,607	+				+0.2
2,142,607	+				+0.3
2,142,615	-				-0.4
2,142,615	-				-0.5
2,143,296	-				-0.1
2,143,298	-				+0.6
2,143,311	+				+0.7
2,143,388	-		SO2045	0.13	-0.1
2,143,450	+		SO2045	0.18	-0.2
2,143,549	+		SO2045	0.26	+0.0
2,143,557	-		SO2045	0.27	+0.4
2,143,562	-		SO2045	0.28	-0.8
2,143,565	+		SO2045	0.28	+0.1
2,143,583	-		SO2045	0.29	-0.1
2,143,770	+		SO2045	0.45	-0.3
2,143,778	-		SO2045	0.46	-1.8
2,143,807	-		SO2045	0.48	+0.5
2,144,023	-		SO2045	0.66	-0.3
2,144,027	+		SO2045	0.67	+0.1
2,144,035	-		SO2045	0.68	-0.2
2,144,191	+		SO2045	0.81	-0.3
2,144,398	+				+0.3
2,144,423	+				+0.2
2,144,423	+				-0.2
2,144,431	-				-0.5
2,144,552	-		SO2046	0.29	-0.4
2,144,576	-		SO2046	0.34	-0.2
2,144,758	+		SO2046	0.73	+0.5
2,144,806	-		SO2046	0.84	+0.6
2,144,817	+		SO2046	0.86	+0.9
2,144,895	-				-0.2
2,145,031	+				+0.1
2,145,031	+				-0.8
2,145,039	-				-0.0
2,145,039	-				-0.3
2,145,056	-				+0.1
2,145,124	+				-0.7
2,145,124	+				-0.0
2,145,148	+				-0.3
2,145,148	+				+0.8
2,145,148	+				-0.0
2,145,148	+				+0.2
2,145,156	-				+0.5
2,145,156	-				+0.6
2,145,166	-				-0.1
2,145,166	-				-0.7
2,145,166	-				+0.1
2,145,216	+				+0.8
2,145,279	-				+0.3
2,145,306	+				+0.9
2,145,361	+		SO2047	0.12	-0.3
2,145,388	-		SO2047	0.13	-0.8