Strain Fitness in Shewanella amazonensis SB2B around Sama_0484

Experiment: Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0483 and Sama_0484 are separated by 171 nucleotidesSama_0484 and Sama_0485 are separated by 3 nucleotides Sama_0483: Sama_0483 - hypothetical protein (RefSeq), at 594,438 to 595,316 _0483 Sama_0484: Sama_0484 - hypothetical protein (RefSeq), at 595,488 to 595,727 _0484 Sama_0485: Sama_0485 - MiaB-like putative RNA modifying enzyme YliG (RefSeq), at 595,731 to 597,212 _0485 Position (kb) 595 596Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 594.522 kb on + strandat 594.522 kb on + strandat 594.522 kb on + strandat 594.522 kb on + strandat 594.522 kb on + strandat 594.522 kb on + strandat 594.523 kb on - strandat 594.523 kb on - strandat 594.523 kb on - strandat 594.538 kb on + strand, within Sama_0483at 594.547 kb on - strand, within Sama_0483at 594.583 kb on - strand, within Sama_0483at 594.583 kb on - strand, within Sama_0483at 594.602 kb on + strand, within Sama_0483at 594.602 kb on + strand, within Sama_0483at 594.602 kb on + strand, within Sama_0483at 594.603 kb on - strand, within Sama_0483at 594.603 kb on - strand, within Sama_0483at 594.603 kb on - strand, within Sama_0483at 594.603 kb on - strand, within Sama_0483at 594.616 kb on - strand, within Sama_0483at 594.720 kb on - strand, within Sama_0483at 594.752 kb on + strand, within Sama_0483at 594.752 kb on + strand, within Sama_0483at 594.781 kb on + strand, within Sama_0483at 594.781 kb on + strand, within Sama_0483at 594.781 kb on + strand, within Sama_0483at 594.782 kb on - strand, within Sama_0483at 594.782 kb on - strand, within Sama_0483at 594.782 kb on - strand, within Sama_0483at 594.782 kb on - strand, within Sama_0483at 594.782 kb on - strand, within Sama_0483at 594.782 kb on - strand, within Sama_0483at 594.782 kb on - strand, within Sama_0483at 594.782 kb on - strand, within Sama_0483at 594.782 kb on - strand, within Sama_0483at 594.784 kb on + strand, within Sama_0483at 594.794 kb on + strand, within Sama_0483at 594.805 kb on + strand, within Sama_0483at 594.806 kb on - strand, within Sama_0483at 594.809 kb on + strand, within Sama_0483at 594.810 kb on - strand, within Sama_0483at 594.810 kb on - strand, within Sama_0483at 594.810 kb on - strand, within Sama_0483at 594.842 kb on + strand, within Sama_0483at 594.843 kb on - strand, within Sama_0483at 594.914 kb on - strand, within Sama_0483at 594.914 kb on - strand, within Sama_0483at 594.971 kb on + strand, within Sama_0483at 594.971 kb on + strand, within Sama_0483at 594.974 kb on + strand, within Sama_0483at 595.004 kb on + strand, within Sama_0483at 595.004 kb on + strand, within Sama_0483at 595.004 kb on + strand, within Sama_0483at 595.005 kb on - strand, within Sama_0483at 595.005 kb on - strand, within Sama_0483at 595.005 kb on - strand, within Sama_0483at 595.005 kb on - strand, within Sama_0483at 595.006 kb on + strand, within Sama_0483at 595.006 kb on + strand, within Sama_0483at 595.007 kb on - strand, within Sama_0483at 595.007 kb on - strand, within Sama_0483at 595.042 kb on + strand, within Sama_0483at 595.042 kb on + strand, within Sama_0483at 595.042 kb on + strand, within Sama_0483at 595.043 kb on - strand, within Sama_0483at 595.061 kb on + strand, within Sama_0483at 595.079 kb on - strand, within Sama_0483at 595.079 kb on - strand, within Sama_0483at 595.112 kb on + strand, within Sama_0483at 595.113 kb on - strand, within Sama_0483at 595.113 kb on - strand, within Sama_0483at 595.137 kb on + strand, within Sama_0483at 595.220 kb on + strand, within Sama_0483at 595.220 kb on + strand, within Sama_0483at 595.221 kb on - strand, within Sama_0483at 595.222 kb on + strand, within Sama_0483at 595.222 kb on + strand, within Sama_0483at 595.302 kb on + strandat 595.303 kb on - strandat 595.318 kb on + strandat 595.318 kb on + strandat 595.363 kb on + strandat 595.451 kb on + strandat 595.452 kb on - strandat 595.452 kb on - strandat 595.452 kb on - strandat 595.469 kb on - strandat 595.483 kb on + strandat 595.483 kb on + strandat 595.483 kb on + strandat 595.483 kb on + strandat 595.483 kb on + strandat 595.483 kb on + strandat 595.483 kb on + strandat 595.484 kb on - strandat 595.484 kb on - strandat 595.484 kb on - strandat 595.484 kb on - strandat 595.484 kb on - strandat 595.493 kb on + strandat 595.494 kb on - strandat 595.494 kb on - strandat 595.523 kb on - strand, within Sama_0484at 595.523 kb on - strand, within Sama_0484at 595.539 kb on - strand, within Sama_0484at 595.539 kb on - strand, within Sama_0484at 595.605 kb on + strand, within Sama_0484at 595.606 kb on - strand, within Sama_0484at 595.606 kb on - strand, within Sama_0484at 595.606 kb on - strand, within Sama_0484at 595.606 kb on - strand, within Sama_0484at 595.606 kb on - strand, within Sama_0484at 595.613 kb on + strand, within Sama_0484at 595.613 kb on + strand, within Sama_0484at 595.613 kb on + strand, within Sama_0484at 595.613 kb on + strand, within Sama_0484at 595.613 kb on + strand, within Sama_0484at 595.614 kb on - strand, within Sama_0484at 595.614 kb on - strand, within Sama_0484at 595.666 kb on + strand, within Sama_0484at 595.667 kb on - strand, within Sama_0484at 595.685 kb on - strand, within Sama_0484at 595.703 kb on + strand, within Sama_0484at 595.704 kb on - strandat 595.717 kb on + strandat 595.718 kb on - strandat 595.732 kb on + strandat 595.733 kb on - strandat 595.803 kb on - strandat 595.803 kb on - strandat 595.803 kb on - strandat 595.835 kb on + strandat 595.836 kb on - strandat 595.836 kb on - strandat 595.979 kb on + strand, within Sama_0485at 595.979 kb on + strand, within Sama_0485at 595.980 kb on - strand, within Sama_0485at 595.980 kb on - strand, within Sama_0485at 595.990 kb on + strand, within Sama_0485at 595.990 kb on + strand, within Sama_0485at 595.990 kb on + strand, within Sama_0485at 595.990 kb on + strand, within Sama_0485at 595.991 kb on - strand, within Sama_0485at 595.991 kb on - strand, within Sama_0485at 595.991 kb on - strand, within Sama_0485at 595.991 kb on - strand, within Sama_0485at 596.019 kb on + strand, within Sama_0485at 596.062 kb on + strand, within Sama_0485at 596.063 kb on - strand, within Sama_0485at 596.063 kb on - strand, within Sama_0485at 596.157 kb on - strand, within Sama_0485at 596.162 kb on + strand, within Sama_0485at 596.162 kb on + strand, within Sama_0485at 596.163 kb on - strand, within Sama_0485at 596.293 kb on + strand, within Sama_0485at 596.294 kb on - strand, within Sama_0485at 596.348 kb on - strand, within Sama_0485at 596.353 kb on + strand, within Sama_0485at 596.354 kb on - strand, within Sama_0485at 596.354 kb on - strand, within Sama_0485at 596.354 kb on - strand, within Sama_0485at 596.355 kb on + strand, within Sama_0485at 596.355 kb on + strand, within Sama_0485at 596.355 kb on + strand, within Sama_0485at 596.355 kb on + strand, within Sama_0485at 596.355 kb on + strand, within Sama_0485at 596.355 kb on + strand, within Sama_0485at 596.355 kb on + strand, within Sama_0485at 596.355 kb on + strand, within Sama_0485at 596.355 kb on + strand, within Sama_0485at 596.355 kb on + strand, within Sama_0485at 596.355 kb on + strand, within Sama_0485at 596.355 kb on + strand, within Sama_0485at 596.355 kb on + strand, within Sama_0485at 596.355 kb on + strand, within Sama_0485at 596.356 kb on - strand, within Sama_0485at 596.356 kb on - strand, within Sama_0485at 596.356 kb on - strand, within Sama_0485at 596.356 kb on - strand, within Sama_0485at 596.356 kb on - strand, within Sama_0485at 596.356 kb on - strand, within Sama_0485at 596.356 kb on - strand, within Sama_0485at 596.356 kb on - strand, within Sama_0485at 596.356 kb on - strand, within Sama_0485at 596.356 kb on - strand, within Sama_0485at 596.356 kb on - strand, within Sama_0485at 596.356 kb on - strand, within Sama_0485at 596.356 kb on - strand, within Sama_0485at 596.356 kb on - strand, within Sama_0485at 596.356 kb on - strand, within Sama_0485at 596.356 kb on - strand, within Sama_0485at 596.356 kb on - strand, within Sama_0485at 596.356 kb on - strand, within Sama_0485at 596.356 kb on - strand, within Sama_0485at 596.356 kb on - strand, within Sama_0485at 596.356 kb on - strand, within Sama_0485at 596.356 kb on - strand, within Sama_0485at 596.356 kb on - strand, within Sama_0485at 596.359 kb on + strand, within Sama_0485at 596.359 kb on + strand, within Sama_0485at 596.360 kb on - strand, within Sama_0485at 596.360 kb on - strand, within Sama_0485at 596.473 kb on + strand, within Sama_0485at 596.641 kb on + strand, within Sama_0485at 596.642 kb on - strand, within Sama_0485at 596.642 kb on - strand, within Sama_0485at 596.647 kb on + strand, within Sama_0485at 596.648 kb on - strand, within Sama_0485at 596.648 kb on - strand, within Sama_0485at 596.648 kb on - strand, within Sama_0485at 596.667 kb on + strand, within Sama_0485at 596.667 kb on + strand, within Sama_0485at 596.668 kb on - strand, within Sama_0485at 596.668 kb on - strand, within Sama_0485at 596.722 kb on + strand, within Sama_0485at 596.722 kb on + strand, within Sama_0485at 596.722 kb on + strand, within Sama_0485at 596.722 kb on + strand, within Sama_0485at 596.722 kb on + strand, within Sama_0485at 596.722 kb on + strand, within Sama_0485at 596.723 kb on - strand, within Sama_0485at 596.723 kb on - strand, within Sama_0485at 596.723 kb on - strand, within Sama_0485at 596.723 kb on - strand, within Sama_0485at 596.723 kb on - strand, within Sama_0485at 596.723 kb on - strand, within Sama_0485at 596.723 kb on - strand, within Sama_0485at 596.723 kb on - strand, within Sama_0485at 596.723 kb on - strand, within Sama_0485

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml
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594,522 + +0.1
594,522 + +0.3
594,522 + -1.1
594,522 + +0.4
594,522 + +0.7
594,522 + -0.6
594,523 - -0.2
594,523 - -0.2
594,523 - +0.3
594,538 + Sama_0483 0.11 -0.5
594,547 - Sama_0483 0.12 -0.0
594,583 - Sama_0483 0.16 -0.7
594,583 - Sama_0483 0.16 -1.8
594,602 + Sama_0483 0.19 +0.8
594,602 + Sama_0483 0.19 +0.7
594,602 + Sama_0483 0.19 -0.3
594,603 - Sama_0483 0.19 +1.4
594,603 - Sama_0483 0.19 +0.1
594,603 - Sama_0483 0.19 +0.4
594,603 - Sama_0483 0.19 +0.1
594,616 - Sama_0483 0.20 +0.1
594,720 - Sama_0483 0.32 -0.0
594,752 + Sama_0483 0.36 -0.7
594,752 + Sama_0483 0.36 +0.3
594,781 + Sama_0483 0.39 -0.6
594,781 + Sama_0483 0.39 +0.6
594,781 + Sama_0483 0.39 +1.2
594,782 - Sama_0483 0.39 +0.3
594,782 - Sama_0483 0.39 +0.1
594,782 - Sama_0483 0.39 +0.6
594,782 - Sama_0483 0.39 -0.4
594,782 - Sama_0483 0.39 -0.0
594,782 - Sama_0483 0.39 +0.1
594,782 - Sama_0483 0.39 -0.8
594,782 - Sama_0483 0.39 +0.3
594,782 - Sama_0483 0.39 -0.7
594,784 + Sama_0483 0.39 -0.9
594,794 + Sama_0483 0.41 -0.1
594,805 + Sama_0483 0.42 +0.6
594,806 - Sama_0483 0.42 +0.3
594,809 + Sama_0483 0.42 -0.6
594,810 - Sama_0483 0.42 +1.1
594,810 - Sama_0483 0.42 -0.5
594,810 - Sama_0483 0.42 +0.2
594,842 + Sama_0483 0.46 +0.2
594,843 - Sama_0483 0.46 -0.1
594,914 - Sama_0483 0.54 -0.4
594,914 - Sama_0483 0.54 -0.5
594,971 + Sama_0483 0.61 -0.7
594,971 + Sama_0483 0.61 -0.4
594,974 + Sama_0483 0.61 -0.9
595,004 + Sama_0483 0.64 -0.0
595,004 + Sama_0483 0.64 -0.2
595,004 + Sama_0483 0.64 +1.1
595,005 - Sama_0483 0.65 -0.7
595,005 - Sama_0483 0.65 -0.6
595,005 - Sama_0483 0.65 +0.2
595,005 - Sama_0483 0.65 -0.7
595,006 + Sama_0483 0.65 -0.0
595,006 + Sama_0483 0.65 +0.1
595,007 - Sama_0483 0.65 -0.0
595,007 - Sama_0483 0.65 +0.1
595,042 + Sama_0483 0.69 +0.6
595,042 + Sama_0483 0.69 -0.5
595,042 + Sama_0483 0.69 +0.4
595,043 - Sama_0483 0.69 -0.5
595,061 + Sama_0483 0.71 +0.7
595,079 - Sama_0483 0.73 -0.0
595,079 - Sama_0483 0.73 -0.1
595,112 + Sama_0483 0.77 -0.6
595,113 - Sama_0483 0.77 -0.3
595,113 - Sama_0483 0.77 -0.0
595,137 + Sama_0483 0.80 -0.0
595,220 + Sama_0483 0.89 -0.0
595,220 + Sama_0483 0.89 -1.7
595,221 - Sama_0483 0.89 -0.7
595,222 + Sama_0483 0.89 +0.2
595,222 + Sama_0483 0.89 +0.5
595,302 + +0.2
595,303 - -0.1
595,318 + +0.3
595,318 + -0.9
595,363 + +0.1
595,451 + -1.0
595,452 - -1.3
595,452 - -0.4
595,452 - -0.3
595,469 - -0.1
595,483 + +0.1
595,483 + -2.1
595,483 + -0.5
595,483 + -0.2
595,483 + -1.3
595,483 + -1.7
595,483 + +0.2
595,484 - -0.7
595,484 - -1.1
595,484 - -0.3
595,484 - -0.4
595,484 - -1.4
595,493 + -0.4
595,494 - -0.0
595,494 - -0.0
595,523 - Sama_0484 0.15 -0.4
595,523 - Sama_0484 0.15 -1.8
595,539 - Sama_0484 0.21 -0.7
595,539 - Sama_0484 0.21 -0.2
595,605 + Sama_0484 0.49 -0.7
595,606 - Sama_0484 0.49 -0.8
595,606 - Sama_0484 0.49 -0.3
595,606 - Sama_0484 0.49 +0.3
595,606 - Sama_0484 0.49 +0.8
595,606 - Sama_0484 0.49 -0.4
595,613 + Sama_0484 0.52 -1.8
595,613 + Sama_0484 0.52 -0.7
595,613 + Sama_0484 0.52 -0.8
595,613 + Sama_0484 0.52 -1.0
595,613 + Sama_0484 0.52 -0.3
595,614 - Sama_0484 0.53 -2.1
595,614 - Sama_0484 0.53 -0.7
595,666 + Sama_0484 0.74 +0.2
595,667 - Sama_0484 0.75 -0.4
595,685 - Sama_0484 0.82 -0.0
595,703 + Sama_0484 0.90 -0.1
595,704 - -1.7
595,717 + -0.3
595,718 - -0.4
595,732 + +1.7
595,733 - +0.2
595,803 - +0.5
595,803 - -0.8
595,803 - -0.3
595,835 + +1.6
595,836 - -0.8
595,836 - -1.0
595,979 + Sama_0485 0.17 -1.3
595,979 + Sama_0485 0.17 -0.2
595,980 - Sama_0485 0.17 -1.0
595,980 - Sama_0485 0.17 +0.2
595,990 + Sama_0485 0.17 -1.3
595,990 + Sama_0485 0.17 -2.3
595,990 + Sama_0485 0.17 +0.3
595,990 + Sama_0485 0.17 +0.9
595,991 - Sama_0485 0.18 -0.9
595,991 - Sama_0485 0.18 +0.6
595,991 - Sama_0485 0.18 -0.7
595,991 - Sama_0485 0.18 -1.3
596,019 + Sama_0485 0.19 +1.0
596,062 + Sama_0485 0.22 +0.3
596,063 - Sama_0485 0.22 -0.3
596,063 - Sama_0485 0.22 +0.1
596,157 - Sama_0485 0.29 +0.0
596,162 + Sama_0485 0.29 +1.7
596,162 + Sama_0485 0.29 -0.4
596,163 - Sama_0485 0.29 +0.3
596,293 + Sama_0485 0.38 -0.4
596,294 - Sama_0485 0.38 -1.3
596,348 - Sama_0485 0.42 -3.1
596,353 + Sama_0485 0.42 +0.6
596,354 - Sama_0485 0.42 +0.7
596,354 - Sama_0485 0.42 -0.2
596,354 - Sama_0485 0.42 -0.3
596,355 + Sama_0485 0.42 +1.3
596,355 + Sama_0485 0.42 -0.9
596,355 + Sama_0485 0.42 -1.5
596,355 + Sama_0485 0.42 +0.7
596,355 + Sama_0485 0.42 -0.1
596,355 + Sama_0485 0.42 -1.1
596,355 + Sama_0485 0.42 -0.1
596,355 + Sama_0485 0.42 +0.3
596,355 + Sama_0485 0.42 -0.3
596,355 + Sama_0485 0.42 +0.5
596,355 + Sama_0485 0.42 +0.7
596,355 + Sama_0485 0.42 +3.3
596,355 + Sama_0485 0.42 +0.1
596,355 + Sama_0485 0.42 -0.5
596,356 - Sama_0485 0.42 -0.5
596,356 - Sama_0485 0.42 -0.5
596,356 - Sama_0485 0.42 -0.6
596,356 - Sama_0485 0.42 +0.3
596,356 - Sama_0485 0.42 +0.9
596,356 - Sama_0485 0.42 -1.1
596,356 - Sama_0485 0.42 -0.3
596,356 - Sama_0485 0.42 +0.6
596,356 - Sama_0485 0.42 +0.4
596,356 - Sama_0485 0.42 +0.1
596,356 - Sama_0485 0.42 -1.7
596,356 - Sama_0485 0.42 -0.1
596,356 - Sama_0485 0.42 -1.0
596,356 - Sama_0485 0.42 -1.1
596,356 - Sama_0485 0.42 -1.7
596,356 - Sama_0485 0.42 +1.3
596,356 - Sama_0485 0.42 -1.1
596,356 - Sama_0485 0.42 -1.1
596,356 - Sama_0485 0.42 +0.4
596,356 - Sama_0485 0.42 +0.0
596,356 - Sama_0485 0.42 -1.2
596,356 - Sama_0485 0.42 -1.0
596,356 - Sama_0485 0.42 +0.3
596,359 + Sama_0485 0.42 -1.3
596,359 + Sama_0485 0.42 -0.6
596,360 - Sama_0485 0.42 -1.0
596,360 - Sama_0485 0.42 -3.0
596,473 + Sama_0485 0.50 -1.3
596,641 + Sama_0485 0.61 -1.7
596,642 - Sama_0485 0.61 -1.8
596,642 - Sama_0485 0.61 +0.1
596,647 + Sama_0485 0.62 -3.1
596,648 - Sama_0485 0.62 -0.6
596,648 - Sama_0485 0.62 -0.4
596,648 - Sama_0485 0.62 -0.2
596,667 + Sama_0485 0.63 -0.7
596,667 + Sama_0485 0.63 -0.1
596,668 - Sama_0485 0.63 -0.8
596,668 - Sama_0485 0.63 -0.6
596,722 + Sama_0485 0.67 -0.0
596,722 + Sama_0485 0.67 -0.7
596,722 + Sama_0485 0.67 +0.9
596,722 + Sama_0485 0.67 -1.0
596,722 + Sama_0485 0.67 +0.2
596,722 + Sama_0485 0.67 -0.7
596,723 - Sama_0485 0.67 -0.6
596,723 - Sama_0485 0.67 +0.2
596,723 - Sama_0485 0.67 -0.5
596,723 - Sama_0485 0.67 -1.7
596,723 - Sama_0485 0.67 +0.3
596,723 - Sama_0485 0.67 +0.1
596,723 - Sama_0485 0.67 -1.1
596,723 - Sama_0485 0.67 -1.3
596,723 - Sama_0485 0.67 -0.8

Or see this region's nucleotide sequence