Experiment: Doxycycline hyclate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0410 and Sama_0411 are separated by 85 nucleotides Sama_0411 and Sama_0412 are separated by 437 nucleotides
Sama_0410: Sama_0410 - ornithine decarboxylase (RefSeq), at 506,845 to 508,020
_0410
Sama_0411: Sama_0411 - hypothetical protein (RefSeq), at 508,106 to 508,321
_0411
Sama_0412: Sama_0412 - Uridine phosphorylase (EC 2.4.2.3) <small>(from data)</small>, at 508,759 to 509,517
_0412
Position (kb) 508
509 Strain fitness (log2 ratio) -2
-1
0
1
2 at 507.109 kb on - strand, within Sama_0410 at 507.190 kb on + strand, within Sama_0410 at 507.190 kb on + strand, within Sama_0410 at 507.191 kb on - strand, within Sama_0410 at 507.267 kb on + strand, within Sama_0410 at 507.267 kb on + strand, within Sama_0410 at 507.268 kb on - strand, within Sama_0410 at 507.268 kb on - strand, within Sama_0410 at 507.274 kb on + strand, within Sama_0410 at 507.274 kb on + strand, within Sama_0410 at 507.274 kb on + strand, within Sama_0410 at 507.275 kb on - strand, within Sama_0410 at 507.275 kb on - strand, within Sama_0410 at 507.275 kb on - strand, within Sama_0410 at 507.275 kb on - strand, within Sama_0410 at 507.275 kb on - strand, within Sama_0410 at 507.275 kb on - strand, within Sama_0410 at 507.275 kb on - strand, within Sama_0410 at 507.275 kb on - strand, within Sama_0410 at 507.275 kb on - strand, within Sama_0410 at 507.275 kb on - strand, within Sama_0410 at 507.275 kb on - strand, within Sama_0410 at 507.275 kb on - strand, within Sama_0410 at 507.275 kb on - strand, within Sama_0410 at 507.282 kb on + strand, within Sama_0410 at 507.355 kb on + strand, within Sama_0410 at 507.356 kb on - strand, within Sama_0410 at 507.356 kb on - strand, within Sama_0410 at 507.356 kb on - strand, within Sama_0410 at 507.397 kb on + strand, within Sama_0410 at 507.398 kb on - strand, within Sama_0410 at 507.404 kb on + strand, within Sama_0410 at 507.404 kb on + strand, within Sama_0410 at 507.404 kb on + strand, within Sama_0410 at 507.404 kb on + strand, within Sama_0410 at 507.405 kb on - strand, within Sama_0410 at 507.405 kb on - strand, within Sama_0410 at 507.462 kb on + strand, within Sama_0410 at 507.473 kb on + strand, within Sama_0410 at 507.474 kb on - strand, within Sama_0410 at 507.505 kb on - strand, within Sama_0410 at 507.522 kb on + strand, within Sama_0410 at 507.522 kb on + strand, within Sama_0410 at 507.522 kb on + strand, within Sama_0410 at 507.523 kb on - strand, within Sama_0410 at 507.523 kb on - strand, within Sama_0410 at 507.550 kb on + strand, within Sama_0410 at 507.551 kb on - strand, within Sama_0410 at 507.551 kb on - strand, within Sama_0410 at 507.551 kb on - strand, within Sama_0410 at 507.551 kb on - strand, within Sama_0410 at 507.551 kb on - strand, within Sama_0410 at 507.551 kb on - strand, within Sama_0410 at 507.555 kb on - strand, within Sama_0410 at 507.580 kb on + strand, within Sama_0410 at 507.580 kb on + strand, within Sama_0410 at 507.699 kb on - strand, within Sama_0410 at 507.699 kb on - strand, within Sama_0410 at 507.702 kb on + strand, within Sama_0410 at 507.702 kb on + strand, within Sama_0410 at 507.703 kb on - strand, within Sama_0410 at 507.703 kb on - strand, within Sama_0410 at 507.711 kb on + strand, within Sama_0410 at 507.712 kb on - strand, within Sama_0410 at 507.740 kb on + strand, within Sama_0410 at 507.740 kb on + strand, within Sama_0410 at 507.742 kb on + strand, within Sama_0410 at 507.742 kb on + strand, within Sama_0410 at 507.743 kb on - strand, within Sama_0410 at 507.743 kb on - strand, within Sama_0410 at 507.743 kb on - strand, within Sama_0410 at 507.743 kb on - strand, within Sama_0410 at 507.743 kb on - strand, within Sama_0410 at 507.799 kb on + strand, within Sama_0410 at 507.799 kb on + strand, within Sama_0410 at 507.800 kb on - strand, within Sama_0410 at 507.880 kb on + strand, within Sama_0410 at 507.880 kb on + strand, within Sama_0410 at 507.880 kb on + strand, within Sama_0410 at 507.880 kb on + strand, within Sama_0410 at 507.880 kb on + strand, within Sama_0410 at 507.880 kb on + strand, within Sama_0410 at 507.880 kb on + strand, within Sama_0410 at 507.880 kb on + strand, within Sama_0410 at 507.880 kb on + strand, within Sama_0410 at 507.880 kb on + strand, within Sama_0410 at 507.880 kb on + strand, within Sama_0410 at 507.881 kb on - strand, within Sama_0410 at 507.881 kb on - strand, within Sama_0410 at 507.881 kb on - strand, within Sama_0410 at 507.881 kb on - strand, within Sama_0410 at 507.881 kb on - strand, within Sama_0410 at 507.881 kb on - strand, within Sama_0410 at 507.881 kb on - strand, within Sama_0410 at 507.881 kb on - strand, within Sama_0410 at 507.881 kb on - strand, within Sama_0410 at 507.889 kb on + strand, within Sama_0410 at 507.889 kb on + strand, within Sama_0410 at 507.889 kb on + strand, within Sama_0410 at 507.889 kb on + strand, within Sama_0410 at 507.889 kb on + strand, within Sama_0410 at 507.890 kb on - strand, within Sama_0410 at 507.890 kb on - strand, within Sama_0410 at 507.890 kb on - strand, within Sama_0410 at 507.890 kb on - strand, within Sama_0410 at 507.890 kb on - strand, within Sama_0410 at 507.890 kb on - strand, within Sama_0410 at 507.890 kb on - strand, within Sama_0410 at 507.890 kb on - strand, within Sama_0410 at 507.895 kb on + strand, within Sama_0410 at 507.895 kb on + strand, within Sama_0410 at 507.895 kb on + strand, within Sama_0410 at 507.895 kb on + strand, within Sama_0410 at 507.956 kb on - strand at 507.967 kb on + strand at 507.968 kb on - strand at 508.009 kb on + strand at 508.009 kb on + strand at 508.009 kb on + strand at 508.010 kb on - strand at 508.010 kb on - strand at 508.012 kb on + strand at 508.012 kb on + strand at 508.012 kb on + strand at 508.012 kb on + strand at 508.013 kb on - strand at 508.018 kb on + strand at 508.042 kb on + strand at 508.042 kb on + strand at 508.042 kb on + strand at 508.043 kb on - strand at 508.043 kb on - strand at 508.045 kb on + strand at 508.116 kb on + strand at 508.116 kb on + strand at 508.117 kb on - strand at 508.178 kb on + strand, within Sama_0411 at 508.224 kb on - strand, within Sama_0411 at 508.224 kb on - strand, within Sama_0411 at 508.262 kb on + strand, within Sama_0411 at 508.286 kb on + strand, within Sama_0411 at 508.294 kb on + strand, within Sama_0411 at 508.323 kb on + strand at 508.323 kb on + strand at 508.324 kb on - strand at 508.324 kb on - strand at 508.324 kb on - strand at 508.324 kb on - strand at 508.324 kb on - strand at 508.324 kb on - strand at 508.369 kb on + strand at 508.370 kb on - strand at 508.407 kb on + strand at 508.450 kb on - strand at 508.452 kb on + strand at 508.453 kb on - strand at 508.468 kb on + strand at 508.474 kb on - strand at 508.474 kb on - strand at 508.520 kb on + strand at 508.537 kb on + strand at 508.537 kb on + strand at 508.537 kb on + strand at 508.538 kb on - strand at 508.542 kb on + strand at 508.542 kb on + strand at 508.542 kb on + strand at 508.542 kb on + strand at 508.542 kb on + strand at 508.542 kb on + strand at 508.542 kb on + strand at 508.543 kb on - strand at 508.543 kb on - strand at 508.543 kb on - strand at 508.543 kb on - strand at 508.543 kb on - strand at 508.543 kb on - strand at 508.545 kb on + strand at 508.553 kb on - strand at 508.553 kb on - strand at 508.553 kb on - strand at 508.577 kb on + strand at 508.577 kb on + strand at 508.593 kb on + strand at 508.593 kb on + strand at 508.593 kb on + strand at 508.594 kb on - strand at 508.594 kb on - strand at 508.610 kb on + strand at 508.616 kb on + strand at 508.616 kb on + strand at 508.617 kb on - strand at 508.622 kb on + strand at 508.622 kb on + strand at 508.622 kb on + strand at 508.623 kb on - strand at 508.623 kb on - strand at 508.623 kb on - strand at 508.638 kb on - strand at 508.699 kb on + strand at 508.699 kb on + strand at 508.699 kb on + strand at 508.699 kb on + strand at 508.700 kb on - strand at 508.700 kb on - strand at 508.702 kb on + strand at 508.703 kb on - strand at 508.707 kb on + strand at 508.707 kb on + strand at 508.707 kb on + strand at 508.707 kb on + strand at 508.708 kb on - strand at 508.708 kb on - strand at 508.708 kb on - strand at 508.708 kb on - strand at 508.723 kb on - strand at 508.734 kb on - strand at 508.769 kb on + strand at 508.769 kb on + strand at 508.770 kb on - strand at 508.770 kb on - strand at 508.770 kb on - strand at 508.770 kb on - strand at 508.851 kb on + strand, within Sama_0412 at 508.851 kb on + strand, within Sama_0412 at 508.852 kb on - strand, within Sama_0412 at 508.869 kb on + strand, within Sama_0412 at 508.870 kb on - strand, within Sama_0412 at 508.903 kb on - strand, within Sama_0412 at 508.909 kb on + strand, within Sama_0412 at 508.909 kb on + strand, within Sama_0412 at 508.909 kb on + strand, within Sama_0412 at 508.909 kb on + strand, within Sama_0412 at 508.910 kb on - strand, within Sama_0412 at 508.918 kb on + strand, within Sama_0412 at 508.918 kb on + strand, within Sama_0412 at 508.918 kb on + strand, within Sama_0412 at 508.977 kb on + strand, within Sama_0412 at 508.977 kb on + strand, within Sama_0412 at 508.977 kb on + strand, within Sama_0412 at 508.978 kb on - strand, within Sama_0412 at 508.978 kb on - strand, within Sama_0412 at 508.978 kb on - strand, within Sama_0412 at 508.978 kb on - strand, within Sama_0412 at 508.978 kb on - strand, within Sama_0412 at 509.063 kb on + strand, within Sama_0412 at 509.063 kb on + strand, within Sama_0412 at 509.063 kb on + strand, within Sama_0412 at 509.064 kb on - strand, within Sama_0412 at 509.064 kb on - strand, within Sama_0412 at 509.064 kb on - strand, within Sama_0412 at 509.064 kb on - strand, within Sama_0412 at 509.064 kb on - strand, within Sama_0412 at 509.064 kb on - strand, within Sama_0412 at 509.064 kb on - strand, within Sama_0412 at 509.160 kb on + strand, within Sama_0412 at 509.160 kb on + strand, within Sama_0412 at 509.160 kb on + strand, within Sama_0412 at 509.160 kb on + strand, within Sama_0412 at 509.161 kb on - strand, within Sama_0412 at 509.161 kb on - strand, within Sama_0412 at 509.161 kb on - strand, within Sama_0412 at 509.232 kb on + strand, within Sama_0412 at 509.239 kb on + strand, within Sama_0412 at 509.239 kb on + strand, within Sama_0412 at 509.239 kb on + strand, within Sama_0412 at 509.240 kb on - strand, within Sama_0412 at 509.240 kb on - strand, within Sama_0412 at 509.240 kb on - strand, within Sama_0412 at 509.240 kb on - strand, within Sama_0412 at 509.267 kb on + strand, within Sama_0412 at 509.267 kb on + strand, within Sama_0412 at 509.268 kb on - strand, within Sama_0412 at 509.268 kb on - strand, within Sama_0412
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml remove 507,109 - Sama_0410 0.22 +0.9 507,190 + Sama_0410 0.29 -0.6 507,190 + Sama_0410 0.29 -1.0 507,191 - Sama_0410 0.29 -0.5 507,267 + Sama_0410 0.36 -0.6 507,267 + Sama_0410 0.36 +1.4 507,268 - Sama_0410 0.36 -0.6 507,268 - Sama_0410 0.36 +0.3 507,274 + Sama_0410 0.36 +0.2 507,274 + Sama_0410 0.36 +0.2 507,274 + Sama_0410 0.36 +0.2 507,275 - Sama_0410 0.37 +0.2 507,275 - Sama_0410 0.37 +0.4 507,275 - Sama_0410 0.37 +0.4 507,275 - Sama_0410 0.37 +0.1 507,275 - Sama_0410 0.37 -0.5 507,275 - Sama_0410 0.37 -0.1 507,275 - Sama_0410 0.37 +0.4 507,275 - Sama_0410 0.37 -0.0 507,275 - Sama_0410 0.37 -0.4 507,275 - Sama_0410 0.37 -0.2 507,275 - Sama_0410 0.37 +0.7 507,275 - Sama_0410 0.37 -0.1 507,275 - Sama_0410 0.37 +0.9 507,282 + Sama_0410 0.37 +0.7 507,355 + Sama_0410 0.43 -0.4 507,356 - Sama_0410 0.43 +0.2 507,356 - Sama_0410 0.43 +0.2 507,356 - Sama_0410 0.43 -0.1 507,397 + Sama_0410 0.47 +0.7 507,398 - Sama_0410 0.47 +0.2 507,404 + Sama_0410 0.48 +0.2 507,404 + Sama_0410 0.48 -0.2 507,404 + Sama_0410 0.48 -1.0 507,404 + Sama_0410 0.48 +0.0 507,405 - Sama_0410 0.48 -0.1 507,405 - Sama_0410 0.48 -0.4 507,462 + Sama_0410 0.52 -0.8 507,473 + Sama_0410 0.53 -0.4 507,474 - Sama_0410 0.53 -0.3 507,505 - Sama_0410 0.56 -0.5 507,522 + Sama_0410 0.58 +0.7 507,522 + Sama_0410 0.58 +0.0 507,522 + Sama_0410 0.58 -0.1 507,523 - Sama_0410 0.58 -1.2 507,523 - Sama_0410 0.58 -0.5 507,550 + Sama_0410 0.60 -0.4 507,551 - Sama_0410 0.60 +0.1 507,551 - Sama_0410 0.60 +0.5 507,551 - Sama_0410 0.60 +0.7 507,551 - Sama_0410 0.60 -0.6 507,551 - Sama_0410 0.60 +0.2 507,551 - Sama_0410 0.60 +0.0 507,555 - Sama_0410 0.60 +0.2 507,580 + Sama_0410 0.62 -0.3 507,580 + Sama_0410 0.62 +0.7 507,699 - Sama_0410 0.73 -0.4 507,699 - Sama_0410 0.73 -0.3 507,702 + Sama_0410 0.73 -0.5 507,702 + Sama_0410 0.73 -1.3 507,703 - Sama_0410 0.73 -0.0 507,703 - Sama_0410 0.73 -2.2 507,711 + Sama_0410 0.74 -0.7 507,712 - Sama_0410 0.74 -0.0 507,740 + Sama_0410 0.76 -1.2 507,740 + Sama_0410 0.76 +2.4 507,742 + Sama_0410 0.76 -1.2 507,742 + Sama_0410 0.76 +0.3 507,743 - Sama_0410 0.76 +0.7 507,743 - Sama_0410 0.76 +0.1 507,743 - Sama_0410 0.76 -1.5 507,743 - Sama_0410 0.76 -0.0 507,743 - Sama_0410 0.76 +0.6 507,799 + Sama_0410 0.81 +1.4 507,799 + Sama_0410 0.81 -0.7 507,800 - Sama_0410 0.81 +0.0 507,880 + Sama_0410 0.88 +0.0 507,880 + Sama_0410 0.88 +0.9 507,880 + Sama_0410 0.88 -0.0 507,880 + Sama_0410 0.88 +0.3 507,880 + Sama_0410 0.88 -0.6 507,880 + Sama_0410 0.88 +0.7 507,880 + Sama_0410 0.88 +0.4 507,880 + Sama_0410 0.88 -1.4 507,880 + Sama_0410 0.88 +1.0 507,880 + Sama_0410 0.88 +0.0 507,880 + Sama_0410 0.88 +0.7 507,881 - Sama_0410 0.88 -1.3 507,881 - Sama_0410 0.88 +0.1 507,881 - Sama_0410 0.88 +0.4 507,881 - Sama_0410 0.88 +0.6 507,881 - Sama_0410 0.88 +0.0 507,881 - Sama_0410 0.88 +0.6 507,881 - Sama_0410 0.88 -0.7 507,881 - Sama_0410 0.88 +1.6 507,881 - Sama_0410 0.88 -0.1 507,889 + Sama_0410 0.89 -0.0 507,889 + Sama_0410 0.89 -1.2 507,889 + Sama_0410 0.89 -2.0 507,889 + Sama_0410 0.89 -0.5 507,889 + Sama_0410 0.89 -0.5 507,890 - Sama_0410 0.89 +1.4 507,890 - Sama_0410 0.89 -0.2 507,890 - Sama_0410 0.89 -1.6 507,890 - Sama_0410 0.89 -1.6 507,890 - Sama_0410 0.89 +0.9 507,890 - Sama_0410 0.89 +0.1 507,890 - Sama_0410 0.89 -1.5 507,890 - Sama_0410 0.89 +0.6 507,895 + Sama_0410 0.89 +1.4 507,895 + Sama_0410 0.89 +0.9 507,895 + Sama_0410 0.89 -0.1 507,895 + Sama_0410 0.89 -0.4 507,956 - +0.4 507,967 + -0.7 507,968 - -1.0 508,009 + -0.0 508,009 + +0.1 508,009 + -0.3 508,010 - -0.4 508,010 - -0.7 508,012 + -0.1 508,012 + +0.0 508,012 + +0.0 508,012 + -0.5 508,013 - -0.6 508,018 + -0.3 508,042 + -1.0 508,042 + +0.9 508,042 + +0.4 508,043 - +0.5 508,043 - -0.3 508,045 + -2.6 508,116 + -0.6 508,116 + -0.1 508,117 - +0.8 508,178 + Sama_0411 0.33 +0.0 508,224 - Sama_0411 0.55 -0.7 508,224 - Sama_0411 0.55 -0.5 508,262 + Sama_0411 0.72 -0.7 508,286 + Sama_0411 0.83 -0.9 508,294 + Sama_0411 0.87 -0.9 508,323 + +0.7 508,323 + -0.5 508,324 - -0.7 508,324 - -1.1 508,324 - +1.9 508,324 - +0.6 508,324 - +0.4 508,324 - +0.1 508,369 + +0.2 508,370 - -1.0 508,407 + -0.1 508,450 - -0.1 508,452 + +0.6 508,453 - +0.9 508,468 + -0.0 508,474 - +1.4 508,474 - +0.9 508,520 + +0.6 508,537 + -0.3 508,537 + +0.8 508,537 + +0.0 508,538 - -0.3 508,542 + -0.8 508,542 + +0.3 508,542 + -0.2 508,542 + -0.7 508,542 + -0.0 508,542 + +0.3 508,542 + -1.7 508,543 - -0.4 508,543 - +1.4 508,543 - +0.6 508,543 - -0.4 508,543 - -0.2 508,543 - -1.1 508,545 + -1.1 508,553 - -0.7 508,553 - +0.8 508,553 - -0.4 508,577 + -0.9 508,577 + -0.6 508,593 + +0.6 508,593 + +0.9 508,593 + -0.6 508,594 - +0.8 508,594 - -0.4 508,610 + -0.1 508,616 + +0.1 508,616 + -0.8 508,617 - -0.5 508,622 + +0.0 508,622 + -0.8 508,622 + -0.4 508,623 - +0.6 508,623 - -0.3 508,623 - -1.0 508,638 - +0.3 508,699 + +0.1 508,699 + +0.4 508,699 + +0.0 508,699 + -2.0 508,700 - -0.4 508,700 - -1.0 508,702 + -0.0 508,703 - -0.4 508,707 + -1.3 508,707 + -0.0 508,707 + -2.1 508,707 + -0.7 508,708 - -1.0 508,708 - -0.6 508,708 - +0.7 508,708 - +0.4 508,723 - +0.5 508,734 - -0.5 508,769 + +0.7 508,769 + +0.3 508,770 - -0.8 508,770 - +0.6 508,770 - -0.1 508,770 - +0.3 508,851 + Sama_0412 0.12 +0.7 508,851 + Sama_0412 0.12 -0.0 508,852 - Sama_0412 0.12 -0.1 508,869 + Sama_0412 0.14 +0.6 508,870 - Sama_0412 0.15 +0.3 508,903 - Sama_0412 0.19 +0.5 508,909 + Sama_0412 0.20 +1.4 508,909 + Sama_0412 0.20 -1.0 508,909 + Sama_0412 0.20 +1.1 508,909 + Sama_0412 0.20 +0.1 508,910 - Sama_0412 0.20 -0.8 508,918 + Sama_0412 0.21 -1.0 508,918 + Sama_0412 0.21 +0.1 508,918 + Sama_0412 0.21 -0.1 508,977 + Sama_0412 0.29 -1.0 508,977 + Sama_0412 0.29 +1.0 508,977 + Sama_0412 0.29 -1.3 508,978 - Sama_0412 0.29 +0.1 508,978 - Sama_0412 0.29 -0.4 508,978 - Sama_0412 0.29 -0.8 508,978 - Sama_0412 0.29 -0.2 508,978 - Sama_0412 0.29 -0.8 509,063 + Sama_0412 0.40 +1.0 509,063 + Sama_0412 0.40 -0.2 509,063 + Sama_0412 0.40 +1.0 509,064 - Sama_0412 0.40 +0.4 509,064 - Sama_0412 0.40 +0.7 509,064 - Sama_0412 0.40 -0.9 509,064 - Sama_0412 0.40 +0.5 509,064 - Sama_0412 0.40 -0.3 509,064 - Sama_0412 0.40 +1.4 509,064 - Sama_0412 0.40 +0.3 509,160 + Sama_0412 0.53 -0.3 509,160 + Sama_0412 0.53 -0.1 509,160 + Sama_0412 0.53 -1.2 509,160 + Sama_0412 0.53 -0.0 509,161 - Sama_0412 0.53 -0.3 509,161 - Sama_0412 0.53 -0.8 509,161 - Sama_0412 0.53 -0.1 509,232 + Sama_0412 0.62 -1.0 509,239 + Sama_0412 0.63 +0.4 509,239 + Sama_0412 0.63 +0.6 509,239 + Sama_0412 0.63 -0.4 509,240 - Sama_0412 0.63 +0.7 509,240 - Sama_0412 0.63 +0.5 509,240 - Sama_0412 0.63 -0.8 509,240 - Sama_0412 0.63 -0.7 509,267 + Sama_0412 0.67 -1.8 509,267 + Sama_0412 0.67 -0.6 509,268 - Sama_0412 0.67 +0.7 509,268 - Sama_0412 0.67 +0.0
Or see this region's nucleotide sequence