Strain Fitness in Shewanella amazonensis SB2B around Sama_2839

Experiment: D-Cycloserine 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cycloserine 0.03125 mg/ml
3,376,225	+		Sama_2838	0.46	-1.2
3,376,225	+		Sama_2838	0.46	-2.8
3,376,225	+		Sama_2838	0.46	+0.0
3,376,226	-		Sama_2838	0.46	-0.7
3,376,226	-		Sama_2838	0.46	+0.5
3,376,226	-		Sama_2838	0.46	-2.0
3,376,226	-		Sama_2838	0.46	-1.8
3,376,265	-		Sama_2838	0.48	-1.8
3,376,265	-		Sama_2838	0.48	-2.3
3,376,265	-		Sama_2838	0.48	-2.5
3,376,276	-		Sama_2838	0.49	-2.6
3,376,361	+		Sama_2838	0.54	-2.4
3,376,404	-		Sama_2838	0.56	-1.2
3,376,404	-		Sama_2838	0.56	-1.7
3,376,503	-		Sama_2838	0.62	-0.7
3,376,519	+		Sama_2838	0.63	-1.2
3,376,519	+		Sama_2838	0.63	-2.2
3,376,519	+		Sama_2838	0.63	-1.7
3,376,520	-		Sama_2838	0.63	-1.4
3,376,523	+		Sama_2838	0.63	-1.7
3,376,523	+		Sama_2838	0.63	-0.7
3,376,524	-		Sama_2838	0.63	-2.7
3,376,524	-		Sama_2838	0.63	-3.8
3,376,524	-		Sama_2838	0.63	-2.6
3,376,524	-		Sama_2838	0.63	-1.7
3,376,524	-		Sama_2838	0.63	-1.6
3,376,524	-		Sama_2838	0.63	-1.0
3,376,524	-		Sama_2838	0.63	-0.4
3,376,589	-		Sama_2838	0.67	-3.2
3,376,699	-		Sama_2838	0.73	-1.6
3,376,699	-		Sama_2838	0.73	-3.3
3,376,737	-		Sama_2838	0.76	-3.0
3,376,825	+		Sama_2838	0.81	-1.7
3,376,825	+		Sama_2838	0.81	-3.0
3,376,825	+		Sama_2838	0.81	-2.4
3,376,825	+		Sama_2838	0.81	-0.4
3,376,826	-		Sama_2838	0.81	-0.7
3,376,826	-		Sama_2838	0.81	-2.0
3,376,826	-		Sama_2838	0.81	-1.1
3,376,881	-		Sama_2838	0.84	-1.4
3,376,881	-		Sama_2838	0.84	-1.0
3,376,881	-		Sama_2838	0.84	-1.7
3,376,956	+		Sama_2838	0.88	-1.2
3,376,978	+		Sama_2838	0.90	-2.1
3,376,979	-		Sama_2838	0.90	+1.0
3,376,979	-		Sama_2838	0.90	-2.0
3,376,979	-		Sama_2838	0.90	-1.1
3,376,979	-		Sama_2838	0.90	-4.1
3,376,979	-		Sama_2838	0.90	-2.0
3,376,979	-		Sama_2838	0.90	-2.1
3,376,979	-		Sama_2838	0.90	-0.3
3,377,009	+				-2.9
3,377,031	-				-0.7
3,377,043	+				-1.6
3,377,136	-				-1.6
3,377,155	-				-2.9
3,377,173	-				-2.0
3,377,189	+				-2.0
3,377,189	+				-0.7
3,377,202	+				+0.0
3,377,252	+				-1.0
3,377,252	+				-1.1
3,377,252	+				-1.1
3,377,253	-				-1.3
3,377,253	-				+0.6
3,377,253	-				-0.2
3,377,253	-				-0.2
3,377,253	-				-1.7
3,377,253	-				-2.4
3,377,253	-				-0.5
3,377,256	-				-2.6
3,377,256	-				-1.2
3,377,303	-				-1.0
3,377,303	-				-2.5
3,377,303	-				-2.8
3,377,303	-				-0.4
3,377,304	+				-1.7
3,377,304	+				-1.6
3,377,304	+				+0.3
3,377,304	+				-2.0
3,377,304	+				-1.6
3,377,305	-				-1.4
3,377,305	-				-2.7
3,377,305	-				-1.6
3,377,305	-				-1.6
3,377,305	-				-0.5
3,377,374	-		Sama_2839	0.12	-2.1
3,377,421	-		Sama_2839	0.15	-1.7
3,377,440	-		Sama_2839	0.16	+0.3
3,377,440	-		Sama_2839	0.16	-2.2
3,377,440	-		Sama_2839	0.16	-1.8
3,377,454	-		Sama_2839	0.17	-2.3
3,377,454	-		Sama_2839	0.17	-1.4
3,377,460	+		Sama_2839	0.17	-1.4
3,377,460	+		Sama_2839	0.17	-1.7
3,377,461	-		Sama_2839	0.17	+0.0
3,377,461	-		Sama_2839	0.17	-0.6
3,377,461	-		Sama_2839	0.17	-2.4
3,377,461	-		Sama_2839	0.17	-3.0
3,377,462	+		Sama_2839	0.17	-3.1
3,377,462	+		Sama_2839	0.17	-3.5
3,377,463	-		Sama_2839	0.17	-0.6
3,377,463	-		Sama_2839	0.17	-3.9
3,377,563	+		Sama_2839	0.23	-2.2
3,377,563	+		Sama_2839	0.23	-2.1
3,377,563	+		Sama_2839	0.23	-2.2
3,377,721	+		Sama_2839	0.31	-0.4
3,377,741	+		Sama_2839	0.33	-1.1
3,377,787	+		Sama_2839	0.35	-2.0
3,377,787	+		Sama_2839	0.35	+0.3
3,377,788	-		Sama_2839	0.35	-0.9
3,377,788	-		Sama_2839	0.35	-2.8
3,377,788	-		Sama_2839	0.35	-2.1
3,377,977	-		Sama_2839	0.46	-2.1
3,378,032	-		Sama_2839	0.49	-0.6
3,378,114	+		Sama_2839	0.53	-1.8
3,378,141	+		Sama_2839	0.55	-0.4
3,378,142	-		Sama_2839	0.55	-1.0
3,378,142	-		Sama_2839	0.55	-1.0
3,378,142	-		Sama_2839	0.55	-2.2
3,378,176	-		Sama_2839	0.57	-2.0
3,378,176	-		Sama_2839	0.57	-1.4
3,378,199	+		Sama_2839	0.58	-0.6
3,378,221	-		Sama_2839	0.59	-3.8
3,378,228	-		Sama_2839	0.59	-3.9
3,378,228	-		Sama_2839	0.59	-1.1
3,378,253	+		Sama_2839	0.61	-1.4
3,378,254	-		Sama_2839	0.61	-2.9
3,378,259	-		Sama_2839	0.61	-1.4
3,378,259	-		Sama_2839	0.61	-2.2
3,378,259	-		Sama_2839	0.61	-1.6
3,378,259	-		Sama_2839	0.61	-1.2
3,378,259	-		Sama_2839	0.61	-2.2
3,378,394	-		Sama_2839	0.69	-1.6
3,378,438	-		Sama_2839	0.71	-1.1
3,378,438	-		Sama_2839	0.71	-1.1
3,378,438	-		Sama_2839	0.71	-2.3
3,378,438	-		Sama_2839	0.71	-1.8
3,378,438	-		Sama_2839	0.71	-1.2
3,378,438	-		Sama_2839	0.71	-1.8
3,378,490	-		Sama_2839	0.74	-2.6
3,378,490	-		Sama_2839	0.74	-3.1
3,378,490	-		Sama_2839	0.74	+0.0
3,378,565	+		Sama_2839	0.78	-1.8
3,378,566	-		Sama_2839	0.78	-1.1
3,378,566	-		Sama_2839	0.78	-1.6
3,378,566	-		Sama_2839	0.78	-1.6
3,378,567	+		Sama_2839	0.78	-2.1
3,378,627	-		Sama_2839	0.81	-2.7
3,378,659	-		Sama_2839	0.83	-2.1
3,378,659	-		Sama_2839	0.83	-3.0
3,378,660	+		Sama_2839	0.83	-1.4
3,378,661	-		Sama_2839	0.83	-1.8
3,378,722	-		Sama_2839	0.87	-3.0
3,378,759	+		Sama_2839	0.89	+0.6
3,378,759	+		Sama_2839	0.89	-0.4
3,378,759	+		Sama_2839	0.89	+0.6
3,378,760	-		Sama_2839	0.89	-1.8
3,378,760	-		Sama_2839	0.89	-3.6
3,378,760	-		Sama_2839	0.89	-3.3
3,378,760	-		Sama_2839	0.89	-1.1
3,378,770	+		Sama_2839	0.89	-0.5
3,378,775	+		Sama_2839	0.90	-2.1
3,378,809	-				-1.6
3,378,809	-				-1.4
3,378,847	-				-4.0
3,378,945	-				-2.6
3,378,983	+				-1.8
3,378,983	+				-1.5
3,378,983	+				-1.0
3,378,984	-				-0.9
3,378,984	-				-0.6
3,378,984	-				-1.7
3,378,994	-				-1.6
3,378,994	-				-1.0
3,378,994	-				-0.6
3,378,998	+				-2.4
3,378,999	-				-1.9
3,378,999	-				-1.0
3,378,999	-				-2.7
3,378,999	-				-1.4
3,378,999	-				-2.6
3,378,999	-				-2.5
3,378,999	-				-0.7
3,378,999	-				-1.3
3,378,999	-				-0.7
3,379,076	-				+1.0
3,379,080	+				+1.0
3,379,080	+				-0.0
3,379,080	+				-0.1
3,379,080	+				+0.6
3,379,081	-				+0.3
3,379,126	+				+0.4
3,379,126	+				+0.8
3,379,126	+				-1.4
3,379,126	+				-0.6
3,379,126	+				-0.6
3,379,126	+				-2.1
3,379,126	+				+1.1
3,379,126	+				-0.4
3,379,126	+				+1.0
3,379,126	+				+0.9
3,379,127	-				-0.5
3,379,127	-				-1.2
3,379,127	-				+1.0
3,379,127	-				-1.4
3,379,127	-				+0.9
3,379,127	-				+0.2
3,379,145	+				+0.0
3,379,145	+				-1.2
3,379,146	-				-0.7
3,379,146	-				-1.0
3,379,192	+				-0.0
3,379,192	+				+0.3
3,379,192	+				+0.9
3,379,192	+				-0.4
3,379,192	+				-1.6
3,379,193	-				-1.6
3,379,210	-				+0.6
3,379,477	+	pntA	Sama_2840	0.11	-1.6
3,379,477	+	pntA	Sama_2840	0.11	-3.4
3,379,477	+	pntA	Sama_2840	0.11	-0.2
3,379,477	+	pntA	Sama_2840	0.11	-0.7
3,379,477	+	pntA	Sama_2840	0.11	+0.4
3,379,478	-	pntA	Sama_2840	0.11	+0.0
3,379,478	-	pntA	Sama_2840	0.11	+0.6
3,379,506	-	pntA	Sama_2840	0.13	+0.1
3,379,506	-	pntA	Sama_2840	0.13	+0.6
3,379,506	-	pntA	Sama_2840	0.13	-0.5
3,379,511	+	pntA	Sama_2840	0.13	-0.6
3,379,512	-	pntA	Sama_2840	0.13	-0.1
3,379,540	+	pntA	Sama_2840	0.15	-0.9
3,379,540	+	pntA	Sama_2840	0.15	+1.3
3,379,541	-	pntA	Sama_2840	0.15	+1.6
3,379,541	-	pntA	Sama_2840	0.15	+1.2
3,379,541	-	pntA	Sama_2840	0.15	-0.4
3,379,577	+	pntA	Sama_2840	0.18	+0.3
3,379,615	+	pntA	Sama_2840	0.20	-0.6
3,379,616	-	pntA	Sama_2840	0.20	-0.6
3,379,629	-	pntA	Sama_2840	0.21	+0.3
3,379,629	-	pntA	Sama_2840	0.21	-0.7
3,379,717	-	pntA	Sama_2840	0.27	+1.1
3,379,847	+	pntA	Sama_2840	0.35	-0.9
3,379,847	+	pntA	Sama_2840	0.35	-0.6
3,379,848	-	pntA	Sama_2840	0.35	+0.5
3,379,848	-	pntA	Sama_2840	0.35	+0.6