Strain Fitness in Shewanella oneidensis MR-1 around SO2122

Experiment: Vancomycin 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vancomycin 0.06 mg/ml
2,226,706	+	cheA	SO2121	0.61	+0.5
2,226,801	+	cheA	SO2121	0.66	-0.2
2,226,854	+	cheA	SO2121	0.68	-0.8
2,226,854	+	cheA	SO2121	0.68	-0.3
2,226,854	+	cheA	SO2121	0.68	-0.1
2,226,854	+	cheA	SO2121	0.68	-0.1
2,226,862	-	cheA	SO2121	0.69	-1.4
2,226,862	-	cheA	SO2121	0.69	+0.2
2,226,862	-	cheA	SO2121	0.69	-1.1
2,226,862	-	cheA	SO2121	0.69	+0.4
2,226,862	-	cheA	SO2121	0.69	+0.7
2,226,958	+	cheA	SO2121	0.73	-0.5
2,226,973	-	cheA	SO2121	0.74	-0.1
2,227,010	+	cheA	SO2121	0.76	+0.2
2,227,010	+	cheA	SO2121	0.76	+0.1
2,227,018	-	cheA	SO2121	0.76	+0.1
2,227,078	-	cheA	SO2121	0.79	-1.2
2,227,125	+	cheA	SO2121	0.81	+0.4
2,227,131	-	cheA	SO2121	0.81	+0.1
2,227,229	+	cheA	SO2121	0.86	+0.5
2,227,229	+	cheA	SO2121	0.86	+0.1
2,227,229	+	cheA	SO2121	0.86	+0.1
2,227,237	-	cheA	SO2121	0.86	-0.6
2,227,237	-	cheA	SO2121	0.86	+1.0
2,227,237	-	cheA	SO2121	0.86	-0.9
2,227,270	-	cheA	SO2121	0.88	-0.1
2,227,270	-	cheA	SO2121	0.88	+0.5
2,227,308	+	cheA	SO2121	0.90	-0.2
2,227,316	-				-0.3
2,227,318	+				-0.4
2,227,320	+				+1.0
2,227,328	-				-1.1
2,227,328	-				-0.8
2,227,328	-				-0.4
2,227,341	-				-0.7
2,227,505	-				-0.1
2,227,527	+				+0.6
2,227,559	+				-0.3
2,227,604	+	cheW-1	SO2122	0.13	-0.0
2,227,612	-	cheW-1	SO2122	0.15	+0.4
2,227,612	-	cheW-1	SO2122	0.15	-0.4
2,227,612	-	cheW-1	SO2122	0.15	+0.7
2,227,612	-	cheW-1	SO2122	0.15	-0.3
2,227,612	-	cheW-1	SO2122	0.15	-0.6
2,227,622	-	cheW-1	SO2122	0.17	+0.3
2,227,671	-	cheW-1	SO2122	0.26	+1.3
2,227,693	+	cheW-1	SO2122	0.30	-0.1
2,227,723	-	cheW-1	SO2122	0.36	+1.0
2,227,742	-	cheW-1	SO2122	0.40	-0.8
2,227,743	-	cheW-1	SO2122	0.40	-0.0
2,227,784	+	cheW-1	SO2122	0.48	-0.2
2,227,784	+	cheW-1	SO2122	0.48	-0.1
2,227,792	-	cheW-1	SO2122	0.50	-1.9
2,227,792	-	cheW-1	SO2122	0.50	+0.9
2,227,792	-	cheW-1	SO2122	0.50	+0.1
2,227,792	-	cheW-1	SO2122	0.50	+0.5
2,227,792	-	cheW-1	SO2122	0.50	+0.4
2,227,792	-	cheW-1	SO2122	0.50	+0.3
2,227,802	-	cheW-1	SO2122	0.52	+0.3
2,227,819	-	cheW-1	SO2122	0.55	+1.0
2,227,887	+	cheW-1	SO2122	0.68	+1.3
2,227,931	+	cheW-1	SO2122	0.77	+1.0
2,227,940	-	cheW-1	SO2122	0.79	-0.2
2,228,032	-				-1.1
2,228,043	+				-0.1
2,228,044	+				-0.2
2,228,051	-				+0.1
2,228,053	-				+0.3
2,228,059	-				+0.4
2,228,080	+				-0.3
2,228,164	+				-0.6
2,228,183	+				-2.0
2,228,236	+				-0.9
2,228,244	-				-0.0
2,228,244	-				-0.0
2,228,308	+		SO2123	0.13	+0.4
2,228,316	-		SO2123	0.13	+1.9
2,228,335	+		SO2123	0.14	-0.9
2,228,335	-		SO2123	0.14	-0.6
2,228,353	-		SO2123	0.15	-0.1
2,228,432	-		SO2123	0.19	-0.1
2,228,432	-		SO2123	0.19	+0.1
2,228,432	-		SO2123	0.19	-0.4
2,228,446	+		SO2123	0.20	-0.4
2,228,510	-		SO2123	0.23	-1.1
2,228,510	-		SO2123	0.23	+0.6
2,228,510	-		SO2123	0.23	+0.2
2,228,526	-		SO2123	0.24	-0.9
2,228,591	-		SO2123	0.27	-1.1
2,228,591	-		SO2123	0.27	-0.4
2,228,616	+		SO2123	0.29	-0.5
2,228,685	+		SO2123	0.32	+0.6
2,228,685	+		SO2123	0.32	-0.5
2,228,693	-		SO2123	0.32	-0.4
2,228,765	+		SO2123	0.36	+0.4
2,228,793	-		SO2123	0.38	-0.8
2,228,958	-		SO2123	0.46	-0.5
2,228,971	-		SO2123	0.47	+1.0
2,229,026	-		SO2123	0.49	+0.8