Strain Fitness in Shewanella oneidensis MR-1 around SO3943

Experiment: Vancomycin 0.03 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSO3942 and degS are separated by 125 nucleotidesdegS and SO3944 are separated by 115 nucleotides SO3942: SO3942 - serine protease, HtrA/DegQ/DegS family (NCBI ptt file), at 4,087,110 to 4,088,462 SO3942 SO3943: degS - protease DegS (NCBI ptt file), at 4,088,588 to 4,089,670 degS SO3944: SO3944 - ISSod4, transposase (NCBI ptt file), at 4,089,786 to 4,090,988 SO3944 Position (kb) 4088 4089 4090Strain fitness (log2 ratio) -3 -2 -1 0 1at 4088.625 kb on - strandat 4088.737 kb on + strand, within degSat 4089.087 kb on + strand, within degSat 4089.096 kb on - strand, within degSat 4089.152 kb on - strand, within degSat 4089.343 kb on + strand, within degSat 4089.417 kb on + strand, within degSat 4089.504 kb on - strand, within degSat 4089.694 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.03 mg/ml
remove
4,088,625 - -2.3
4,088,737 + degS SO3943 0.14 -1.4
4,089,087 + degS SO3943 0.46 -2.9
4,089,096 - degS SO3943 0.47 -3.1
4,089,152 - degS SO3943 0.52 -2.2
4,089,343 + degS SO3943 0.70 +0.3
4,089,417 + degS SO3943 0.77 -1.2
4,089,504 - degS SO3943 0.85 -2.4
4,089,694 + -0.4

Or see this region's nucleotide sequence