Experiment: Vancomycin 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO_0739 and SO0740 are separated by 208 nucleotides SO0740 and ggt-1 are separated by 217 nucleotides
SO_0739: SO_0739 - no description, at 755,419 to 756,255
_0739
SO0740: SO0740 - melanin biosynthesis protein TyrA, putative (NCBI ptt file), at 756,464 to 757,399
SO0740
SO0741: ggt-1 - gamma-glutamyltranspeptidase (NCBI ptt file), at 757,617 to 759,254
ggt-1
Position (kb) 756
757
758 Strain fitness (log2 ratio) -2
-1
0
1 at 755.483 kb on - strand at 755.553 kb on - strand, within SO_0739 at 755.575 kb on - strand, within SO_0739 at 755.614 kb on - strand, within SO_0739 at 755.773 kb on - strand, within SO_0739 at 755.773 kb on - strand, within SO_0739 at 755.773 kb on - strand, within SO_0739 at 755.778 kb on - strand, within SO_0739 at 755.826 kb on - strand, within SO_0739 at 755.843 kb on + strand, within SO_0739 at 755.874 kb on + strand, within SO_0739 at 755.971 kb on - strand, within SO_0739 at 755.981 kb on - strand, within SO_0739 at 755.986 kb on + strand, within SO_0739 at 755.986 kb on + strand, within SO_0739 at 755.994 kb on - strand, within SO_0739 at 756.017 kb on + strand, within SO_0739 at 756.185 kb on - strand at 756.218 kb on - strand at 756.218 kb on - strand at 756.235 kb on + strand at 756.433 kb on - strand at 756.536 kb on - strand at 756.581 kb on + strand, within SO0740 at 756.638 kb on + strand, within SO0740 at 756.712 kb on + strand, within SO0740 at 756.743 kb on - strand, within SO0740 at 756.964 kb on + strand, within SO0740 at 756.967 kb on - strand, within SO0740 at 757.027 kb on - strand, within SO0740 at 757.122 kb on + strand, within SO0740 at 757.130 kb on - strand, within SO0740 at 757.157 kb on - strand, within SO0740 at 757.157 kb on - strand, within SO0740 at 757.157 kb on - strand, within SO0740 at 757.169 kb on + strand, within SO0740 at 757.176 kb on + strand, within SO0740 at 757.263 kb on - strand, within SO0740 at 757.281 kb on + strand, within SO0740 at 757.287 kb on - strand, within SO0740 at 757.361 kb on + strand at 757.370 kb on - strand at 757.471 kb on - strand at 757.588 kb on + strand at 757.924 kb on + strand, within ggt-1 at 757.934 kb on + strand, within ggt-1 at 757.934 kb on + strand, within ggt-1 at 757.952 kb on + strand, within ggt-1 at 757.960 kb on - strand, within ggt-1 at 757.962 kb on + strand, within ggt-1 at 757.969 kb on + strand, within ggt-1 at 758.035 kb on + strand, within ggt-1 at 758.084 kb on + strand, within ggt-1 at 758.091 kb on + strand, within ggt-1 at 758.121 kb on - strand, within ggt-1 at 758.183 kb on + strand, within ggt-1 at 758.189 kb on - strand, within ggt-1 at 758.189 kb on - strand, within ggt-1 at 758.272 kb on + strand, within ggt-1
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.03 mg/ml remove 755,483 - +0.3 755,553 - SO_0739 0.16 +0.1 755,575 - SO_0739 0.19 +0.1 755,614 - SO_0739 0.23 -0.3 755,773 - SO_0739 0.42 +0.7 755,773 - SO_0739 0.42 +1.4 755,773 - SO_0739 0.42 -0.6 755,778 - SO_0739 0.43 +0.4 755,826 - SO_0739 0.49 -2.6 755,843 + SO_0739 0.51 +0.9 755,874 + SO_0739 0.54 +1.6 755,971 - SO_0739 0.66 +0.1 755,981 - SO_0739 0.67 +0.1 755,986 + SO_0739 0.68 -0.1 755,986 + SO_0739 0.68 -0.5 755,994 - SO_0739 0.69 +0.2 756,017 + SO_0739 0.71 +0.1 756,185 - +0.2 756,218 - -1.3 756,218 - -0.1 756,235 + -0.4 756,433 - -0.1 756,536 - -0.2 756,581 + SO0740 0.12 +0.0 756,638 + SO0740 0.19 -1.1 756,712 + SO0740 0.26 -0.7 756,743 - SO0740 0.30 -0.6 756,964 + SO0740 0.53 -1.2 756,967 - SO0740 0.54 -0.8 757,027 - SO0740 0.60 -0.6 757,122 + SO0740 0.70 -0.6 757,130 - SO0740 0.71 -2.2 757,157 - SO0740 0.74 -1.0 757,157 - SO0740 0.74 -1.2 757,157 - SO0740 0.74 -0.3 757,169 + SO0740 0.75 +0.7 757,176 + SO0740 0.76 -0.6 757,263 - SO0740 0.85 -1.3 757,281 + SO0740 0.87 -1.0 757,287 - SO0740 0.88 -1.1 757,361 + -1.0 757,370 - -0.8 757,471 - -0.4 757,588 + -0.8 757,924 + ggt-1 SO0741 0.19 +0.6 757,934 + ggt-1 SO0741 0.19 +0.4 757,934 + ggt-1 SO0741 0.19 -0.4 757,952 + ggt-1 SO0741 0.20 -1.0 757,960 - ggt-1 SO0741 0.21 +1.1 757,962 + ggt-1 SO0741 0.21 -0.5 757,969 + ggt-1 SO0741 0.21 -0.6 758,035 + ggt-1 SO0741 0.26 +0.6 758,084 + ggt-1 SO0741 0.29 -0.4 758,091 + ggt-1 SO0741 0.29 -0.8 758,121 - ggt-1 SO0741 0.31 +0.2 758,183 + ggt-1 SO0741 0.35 +0.5 758,189 - ggt-1 SO0741 0.35 +0.2 758,189 - ggt-1 SO0741 0.35 +0.3 758,272 + ggt-1 SO0741 0.40 +0.6
Or see this region's nucleotide sequence