Strain Fitness in Shewanella amazonensis SB2B around Sama_0502

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
614,566	+		Sama_0500	0.45	+0.4
614,566	+		Sama_0500	0.45	-2.0
614,578	+		Sama_0500	0.49	-2.2
614,578	+		Sama_0500	0.49	+0.8
614,579	-		Sama_0500	0.49	-1.0
614,579	-		Sama_0500	0.49	-2.3
614,579	-		Sama_0500	0.49	-2.0
614,579	-		Sama_0500	0.49	-1.7
614,579	-		Sama_0500	0.49	+0.5
614,609	+		Sama_0500	0.58	-1.6
614,610	-		Sama_0500	0.58	+1.1
614,610	-		Sama_0500	0.58	+0.9
614,610	-		Sama_0500	0.58	+0.8
614,613	+		Sama_0500	0.59	+0.5
614,613	+		Sama_0500	0.59	-0.6
614,614	-		Sama_0500	0.59	+0.1
614,650	+		Sama_0500	0.70	+0.3
614,650	+		Sama_0500	0.70	+0.3
614,650	+		Sama_0500	0.70	+0.2
614,651	-		Sama_0500	0.70	+0.4
614,656	+		Sama_0500	0.72	-1.3
614,656	+		Sama_0500	0.72	+1.3
614,656	+		Sama_0500	0.72	+0.1
614,657	-		Sama_0500	0.72	+0.1
614,657	-		Sama_0500	0.72	-1.6
614,710	+		Sama_0500	0.88	-0.5
614,710	+		Sama_0500	0.88	+1.1
614,711	-		Sama_0500	0.88	-0.6
614,711	-		Sama_0500	0.88	-0.5
614,721	+				-0.0
614,721	+				-0.8
614,721	+				+0.8
614,722	-				-0.3
614,722	-				-0.6
614,722	-				-0.5
614,722	-				-0.5
614,722	-				+0.0
614,722	-				+0.1
614,729	-				-1.6
614,745	+				-2.6
614,778	+				-0.5
614,778	+				-0.5
614,778	+				-1.9
614,778	+				-0.6
614,778	+				-2.8
614,779	-				-1.8
614,779	-				-0.9
614,779	-				-0.7
614,779	-				+1.1
614,779	-				-0.0
614,779	-				-0.3
614,821	+				-0.6
614,821	+				-1.2
614,821	+				-2.3
614,821	+				-0.6
614,821	+				+1.1
614,821	+				-1.0
614,822	-				-1.8
614,822	-				-1.3
614,822	-				-0.8
614,822	-				-2.1
614,822	-				+1.9
614,822	-				-0.0
614,831	+				-0.6
614,832	-				+0.8
614,850	+				-1.2
614,850	+				-1.9
614,850	+				+0.3
614,851	-				-0.1
614,853	+				+1.5
614,854	-				+2.1
614,878	+				-1.4
615,008	+		Sama_0501	0.29	+1.0
615,008	+		Sama_0501	0.29	+0.5
615,008	+		Sama_0501	0.29	-1.1
615,009	-		Sama_0501	0.29	-0.0
615,018	+		Sama_0501	0.31	+0.5
615,018	+		Sama_0501	0.31	-0.9
615,018	+		Sama_0501	0.31	+0.2
615,018	+		Sama_0501	0.31	+0.2
615,052	-		Sama_0501	0.36	+0.8
615,078	+		Sama_0501	0.41	-2.3
615,160	-		Sama_0501	0.55	+1.5
615,218	-		Sama_0501	0.64	-0.3
615,232	+		Sama_0501	0.67	-0.5
615,233	-		Sama_0501	0.67	-0.6
615,239	+		Sama_0501	0.68	-0.7
615,239	+		Sama_0501	0.68	+0.3
615,239	+		Sama_0501	0.68	-1.4
615,240	-		Sama_0501	0.68	-1.3
615,299	+		Sama_0501	0.78	+0.1
615,299	+		Sama_0501	0.78	-0.0
615,299	+		Sama_0501	0.78	+0.3
615,299	+		Sama_0501	0.78	-2.6
615,299	+		Sama_0501	0.78	+0.2
615,299	+		Sama_0501	0.78	-0.8
615,299	+		Sama_0501	0.78	-0.7
615,299	+		Sama_0501	0.78	-0.3
615,299	+		Sama_0501	0.78	+3.1
615,299	+		Sama_0501	0.78	-1.1
615,299	+		Sama_0501	0.78	-1.7
615,299	+		Sama_0501	0.78	-0.0
615,299	+		Sama_0501	0.78	-0.1
615,299	+		Sama_0501	0.78	-2.0
615,299	+		Sama_0501	0.78	-0.2
615,299	+		Sama_0501	0.78	+0.4
615,299	+		Sama_0501	0.78	-1.0
615,299	+		Sama_0501	0.78	-0.8
615,299	+		Sama_0501	0.78	+2.1
615,300	-		Sama_0501	0.78	-1.1
615,300	-		Sama_0501	0.78	+1.5
615,300	-		Sama_0501	0.78	+0.2
615,300	-		Sama_0501	0.78	+0.8
615,300	-		Sama_0501	0.78	-0.0
615,300	-		Sama_0501	0.78	+0.7
615,300	-		Sama_0501	0.78	+0.1
615,300	-		Sama_0501	0.78	-0.5
615,300	-		Sama_0501	0.78	+0.3
615,300	-		Sama_0501	0.78	-0.3
615,300	-		Sama_0501	0.78	+0.3
615,300	-		Sama_0501	0.78	+0.1
615,300	-		Sama_0501	0.78	-1.3
615,300	-		Sama_0501	0.78	+0.5
615,300	-		Sama_0501	0.78	+0.4
615,412	+				+1.6
615,412	+				+0.1
615,412	+				-0.6
615,413	-				-1.4
615,413	-				-0.5
615,413	-				-2.9
615,434	+				+0.3
615,434	+				+0.4
615,434	+				-0.0
615,435	-				+0.5
615,435	-				-0.6
615,522	+				-1.0
615,522	+				+0.1
615,540	-				-1.0
615,594	+				-0.6
615,594	+				+0.4
615,594	+				-1.2
615,595	-				+0.5
615,595	-				+0.8
615,621	-				-0.7
615,621	-				-0.9
615,636	-				-0.3
615,636	-				-2.1
615,664	-				-1.9
615,664	-				+0.7
615,725	-		Sama_0502	0.11	+0.8
615,725	-		Sama_0502	0.11	-0.5
615,725	-		Sama_0502	0.11	-0.9
615,743	+		Sama_0502	0.12	+0.5
615,744	-		Sama_0502	0.12	-1.1
615,744	-		Sama_0502	0.12	-0.6
615,787	+		Sama_0502	0.15	-0.5
615,787	+		Sama_0502	0.15	-0.2
615,788	-		Sama_0502	0.15	-0.3
615,791	+		Sama_0502	0.15	+0.1
615,791	+		Sama_0502	0.15	-0.4
615,791	+		Sama_0502	0.15	-0.8
615,791	+		Sama_0502	0.15	+0.0
615,791	+		Sama_0502	0.15	+0.7
615,791	+		Sama_0502	0.15	-0.0
615,791	+		Sama_0502	0.15	-1.4
615,791	+		Sama_0502	0.15	+0.1
615,791	+		Sama_0502	0.15	+0.9
615,792	-		Sama_0502	0.15	-1.3
615,792	-		Sama_0502	0.15	-2.3
615,792	-		Sama_0502	0.15	-0.6
615,792	-		Sama_0502	0.15	+0.1
615,812	+		Sama_0502	0.16	-0.4
615,812	+		Sama_0502	0.16	-0.4
615,813	-		Sama_0502	0.17	+0.0
615,859	+		Sama_0502	0.19	-0.6
615,859	+		Sama_0502	0.19	-0.7
615,859	+		Sama_0502	0.19	-0.2
615,859	+		Sama_0502	0.19	-1.1
615,859	+		Sama_0502	0.19	-1.2
615,873	+		Sama_0502	0.20	-2.0
615,874	-		Sama_0502	0.20	-1.0
615,876	-		Sama_0502	0.20	-1.9
615,876	-		Sama_0502	0.20	-1.5
615,876	-		Sama_0502	0.20	-1.5
615,915	+		Sama_0502	0.23	+0.5
615,916	-		Sama_0502	0.23	+0.9
615,916	-		Sama_0502	0.23	+0.0
615,956	+		Sama_0502	0.25	-0.0
615,956	+		Sama_0502	0.25	-0.3
615,956	+		Sama_0502	0.25	+0.4
615,956	+		Sama_0502	0.25	-0.6
615,956	+		Sama_0502	0.25	+0.9
615,957	-		Sama_0502	0.25	-1.8
615,957	-		Sama_0502	0.25	+1.5
615,978	-		Sama_0502	0.26	-1.6
616,025	+		Sama_0502	0.29	+0.3
616,026	-		Sama_0502	0.29	+0.4
616,026	-		Sama_0502	0.29	+0.5
616,088	+		Sama_0502	0.33	-0.5
616,088	+		Sama_0502	0.33	-0.2
616,089	-		Sama_0502	0.33	-0.2
616,089	-		Sama_0502	0.33	-0.0
616,089	-		Sama_0502	0.33	-1.5
616,141	-		Sama_0502	0.36	-1.2
616,166	+		Sama_0502	0.38	-0.2
616,166	+		Sama_0502	0.38	-1.5
616,166	+		Sama_0502	0.38	-1.0
616,166	+		Sama_0502	0.38	-1.6
616,166	+		Sama_0502	0.38	+0.8
616,166	+		Sama_0502	0.38	-0.9
616,166	+		Sama_0502	0.38	-2.1
616,166	+		Sama_0502	0.38	-0.7
616,166	+		Sama_0502	0.38	-1.9
616,166	+		Sama_0502	0.38	-0.3
616,166	+		Sama_0502	0.38	+0.1
616,166	+		Sama_0502	0.38	+0.1
616,167	-		Sama_0502	0.38	+0.9
616,167	-		Sama_0502	0.38	+0.5
616,167	-		Sama_0502	0.38	-0.7
616,167	-		Sama_0502	0.38	-0.5
616,167	-		Sama_0502	0.38	-1.3
616,167	-		Sama_0502	0.38	-1.0
616,167	-		Sama_0502	0.38	-2.0
616,167	-		Sama_0502	0.38	-0.8
616,167	-		Sama_0502	0.38	-1.3
616,167	-		Sama_0502	0.38	-0.0
616,167	-		Sama_0502	0.38	-0.2
616,168	+		Sama_0502	0.38	+1.1
616,168	+		Sama_0502	0.38	-0.2
616,168	+		Sama_0502	0.38	+2.7
616,168	+		Sama_0502	0.38	-0.5
616,168	+		Sama_0502	0.38	-0.0
616,168	+		Sama_0502	0.38	-0.5
616,169	-		Sama_0502	0.38	-2.5
616,169	-		Sama_0502	0.38	+1.5
616,169	-		Sama_0502	0.38	-0.6
616,169	-		Sama_0502	0.38	-0.8
616,169	-		Sama_0502	0.38	-1.7
616,169	-		Sama_0502	0.38	-1.7
616,299	+		Sama_0502	0.46	-0.5
616,370	+		Sama_0502	0.50	+1.5
616,371	-		Sama_0502	0.50	+2.1
616,371	-		Sama_0502	0.50	+0.4
616,467	-		Sama_0502	0.56	-0.3
616,512	+		Sama_0502	0.58	+0.8
616,512	+		Sama_0502	0.58	-2.1
616,513	-		Sama_0502	0.59	-0.7
616,529	-		Sama_0502	0.60	+0.4
616,602	+		Sama_0502	0.64	-0.1
616,679	+		Sama_0502	0.69	-0.1
616,679	+		Sama_0502	0.69	+0.8
616,679	+		Sama_0502	0.69	-2.6
616,679	+		Sama_0502	0.69	+0.3
616,679	+		Sama_0502	0.69	-0.8
616,679	+		Sama_0502	0.69	-1.4
616,679	+		Sama_0502	0.69	-1.3
616,680	-		Sama_0502	0.69	-1.0
616,680	-		Sama_0502	0.69	+0.5
616,680	-		Sama_0502	0.69	-0.8
616,798	+		Sama_0502	0.76	-2.0
616,798	+		Sama_0502	0.76	-1.6
616,798	+		Sama_0502	0.76	+1.1
616,799	-		Sama_0502	0.76	-0.7
616,799	-		Sama_0502	0.76	-0.0
616,799	-		Sama_0502	0.76	+0.5
616,799	-		Sama_0502	0.76	-2.3
616,799	-		Sama_0502	0.76	+0.5
616,799	-		Sama_0502	0.76	-1.2
616,799	-		Sama_0502	0.76	-0.7
616,799	-		Sama_0502	0.76	-2.1
616,802	+		Sama_0502	0.76	-1.0
616,802	+		Sama_0502	0.76	-0.3
616,802	+		Sama_0502	0.76	-1.0
616,802	+		Sama_0502	0.76	+1.7
616,802	+		Sama_0502	0.76	-2.2
616,803	-		Sama_0502	0.76	+0.0
616,803	-		Sama_0502	0.76	-1.0
616,803	-		Sama_0502	0.76	+0.6
616,803	-		Sama_0502	0.76	-0.3
616,803	-		Sama_0502	0.76	-0.1
616,803	-		Sama_0502	0.76	-0.8
616,803	-		Sama_0502	0.76	-0.7
616,803	-		Sama_0502	0.76	+0.2
616,803	-		Sama_0502	0.76	-1.0
616,803	-		Sama_0502	0.76	+2.1
616,976	+		Sama_0502	0.86	-1.2
616,976	+		Sama_0502	0.86	-0.2
616,977	-		Sama_0502	0.86	-0.6
616,977	-		Sama_0502	0.86	-1.2
616,977	-		Sama_0502	0.86	+0.4
616,977	-		Sama_0502	0.86	-0.2
617,003	+		Sama_0502	0.88	+0.8
617,003	+		Sama_0502	0.88	-0.8
617,004	-		Sama_0502	0.88	+0.1
617,015	-		Sama_0502	0.89	+0.1
617,015	-		Sama_0502	0.89	+0.3
617,037	+				+0.8
617,037	+				+0.5
617,037	+				-0.2
617,038	-				+1.3
617,038	-				-0.9
617,038	-				-1.0
617,038	-				-1.0
617,176	+				+1.4
617,177	-				+0.9
617,193	+				-0.4
617,193	+				-0.3
617,193	+				-1.0
617,193	+				-0.6
617,194	-				-1.4
617,194	-				+1.3
617,224	+				+0.4
617,225	-				+1.0
617,225	-				-0.5
617,225	-				+0.7
617,225	-				-0.7
617,225	-				-0.2
617,227	+				-0.9
617,227	+				-0.0
617,227	+				-0.3
617,227	+				+1.0
617,227	+				+0.1
617,227	+				-0.9
617,227	+				-1.6
617,227	+				-0.6
617,227	+				-1.2
617,227	+				-0.7
617,228	-				-1.1
617,228	-				+1.3
617,231	+				-0.3
617,231	+				-1.0
617,231	+				-0.2
617,231	+				-0.5
617,231	+				+1.8
617,231	+				+0.1
617,231	+				-1.0
617,232	-				+0.3
617,232	-				-1.9
617,244	-				-1.3
617,307	-				+1.8
617,310	+				+1.1
617,386	-				+0.1
617,411	+		Sama_0503	0.13	-0.3
617,411	+		Sama_0503	0.13	+1.9
617,411	+		Sama_0503	0.13	-0.3
617,411	+		Sama_0503	0.13	-0.6
617,411	+		Sama_0503	0.13	+2.5
617,411	+		Sama_0503	0.13	-2.2
617,411	+		Sama_0503	0.13	-0.5
617,412	-		Sama_0503	0.14	-0.8
617,412	-		Sama_0503	0.14	+0.6
617,412	-		Sama_0503	0.14	-0.8
617,412	-		Sama_0503	0.14	-0.7
617,412	-		Sama_0503	0.14	+0.5
617,412	-		Sama_0503	0.14	-0.8
617,412	-		Sama_0503	0.14	+0.8
617,491	+		Sama_0503	0.31	+1.5
617,498	-		Sama_0503	0.32	+1.3
617,498	-		Sama_0503	0.32	-1.3
617,498	-		Sama_0503	0.32	+0.1
617,561	-		Sama_0503	0.46	+0.1
617,561	-		Sama_0503	0.46	-1.4
617,605	+		Sama_0503	0.55	-1.5
617,605	+		Sama_0503	0.55	-2.4
617,653	+		Sama_0503	0.66	+0.4
617,653	+		Sama_0503	0.66	-0.0
617,664	+		Sama_0503	0.68	+0.5
617,665	-		Sama_0503	0.68	-0.6
617,777	-				-0.0
617,810	+				-0.3
617,810	+				-0.4
617,811	-				-0.1
617,811	-				-0.0
617,811	-				+1.2
617,811	-				+0.5
617,811	-				-1.2
617,811	-				+0.3
617,811	-				+0.5
617,827	+				-1.3
617,863	+				-2.0
617,864	-				-1.0
617,865	+				+0.5
617,866	-				-2.3
617,893	+				-0.0
617,912	+				+2.4
617,912	+				-1.3
617,918	+				-0.9
617,918	+				+0.7
617,919	-				-1.3
617,919	-				+0.5
617,919	-				-0.3
617,926	+				+0.8
617,926	+				-0.7
617,942	-				-1.9
617,965	-				-0.0
618,082	+		Sama_0504	0.13	-3.0
618,086	+		Sama_0504	0.13	+0.4
618,086	+		Sama_0504	0.13	+0.1
618,086	+		Sama_0504	0.13	-0.8
618,086	+		Sama_0504	0.13	+0.8
618,086	+		Sama_0504	0.13	+0.8
618,086	+		Sama_0504	0.13	-1.8
618,086	+		Sama_0504	0.13	+0.3
618,087	-		Sama_0504	0.13	+0.3
618,087	-		Sama_0504	0.13	+0.4
618,087	-		Sama_0504	0.13	+2.1
618,106	+		Sama_0504	0.15	+1.7
618,198	-		Sama_0504	0.24	-1.2