Experiment: Bacitracin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_2042 and tmk are separated by 15 nucleotides tmk and Sama_2044 overlap by 4 nucleotides Sama_2044 and Sama_2045 are separated by 32 nucleotides Sama_2045 and dcd are separated by 8 nucleotides
Sama_2042: Sama_2042 - DNA-directed DNA polymerase (RefSeq), at 2,478,933 to 2,479,847
_2042
Sama_2043: tmk - thymidylate kinase (RefSeq), at 2,479,863 to 2,480,489
tmk
Sama_2044: Sama_2044 - hypothetical protein (RefSeq), at 2,480,486 to 2,481,460
_2044
Sama_2045: Sama_2045 - aminodeoxychorismate lyase (RefSeq), at 2,481,493 to 2,482,383
_2045
Sama_2046: dcd - deoxycytidine triphosphate deaminase (RefSeq), at 2,482,392 to 2,482,976
dcd
Position (kb)
2480
2481
2482 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2479.848 kb on - strand at 2479.879 kb on - strand at 2479.879 kb on - strand at 2479.879 kb on - strand at 2480.587 kb on - strand, within Sama_2044 at 2480.651 kb on - strand, within Sama_2044 at 2480.798 kb on - strand, within Sama_2044 at 2480.950 kb on - strand, within Sama_2044 at 2480.992 kb on - strand, within Sama_2044 at 2480.998 kb on - strand, within Sama_2044 at 2481.110 kb on - strand, within Sama_2044 at 2481.461 kb on - strand at 2481.559 kb on - strand at 2481.631 kb on - strand, within Sama_2045 at 2481.631 kb on - strand, within Sama_2045 at 2481.631 kb on - strand, within Sama_2045 at 2481.732 kb on - strand, within Sama_2045 at 2481.732 kb on - strand, within Sama_2045 at 2481.732 kb on - strand, within Sama_2045 at 2481.732 kb on - strand, within Sama_2045 at 2481.788 kb on - strand, within Sama_2045 at 2481.788 kb on - strand, within Sama_2045 at 2481.949 kb on - strand, within Sama_2045 at 2481.949 kb on - strand, within Sama_2045 at 2482.029 kb on - strand, within Sama_2045 at 2482.057 kb on - strand, within Sama_2045 at 2482.120 kb on - strand, within Sama_2045 at 2482.120 kb on - strand, within Sama_2045 at 2482.127 kb on - strand, within Sama_2045 at 2482.127 kb on - strand, within Sama_2045 at 2482.184 kb on - strand, within Sama_2045 at 2482.357 kb on - strand at 2482.442 kb on - strand at 2482.442 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.125 mg/ml remove 2,479,848 - +0.6 2,479,879 - +0.2 2,479,879 - +0.6 2,479,879 - -2.0 2,480,587 - Sama_2044 0.10 -3.3 2,480,651 - Sama_2044 0.17 -3.7 2,480,798 - Sama_2044 0.32 +1.3 2,480,950 - Sama_2044 0.48 -3.1 2,480,992 - Sama_2044 0.52 -3.1 2,480,998 - Sama_2044 0.53 -2.2 2,481,110 - Sama_2044 0.64 -2.8 2,481,461 - -2.4 2,481,559 - -0.5 2,481,631 - Sama_2045 0.15 -0.0 2,481,631 - Sama_2045 0.15 -0.7 2,481,631 - Sama_2045 0.15 -1.6 2,481,732 - Sama_2045 0.27 -0.0 2,481,732 - Sama_2045 0.27 -0.2 2,481,732 - Sama_2045 0.27 -2.0 2,481,732 - Sama_2045 0.27 +0.5 2,481,788 - Sama_2045 0.33 -0.8 2,481,788 - Sama_2045 0.33 -1.2 2,481,949 - Sama_2045 0.51 -1.0 2,481,949 - Sama_2045 0.51 +0.8 2,482,029 - Sama_2045 0.60 +0.3 2,482,057 - Sama_2045 0.63 -0.2 2,482,120 - Sama_2045 0.70 -0.5 2,482,120 - Sama_2045 0.70 -0.2 2,482,127 - Sama_2045 0.71 +0.8 2,482,127 - Sama_2045 0.71 +2.1 2,482,184 - Sama_2045 0.78 +0.6 2,482,357 - +0.9 2,482,442 - -1.3 2,482,442 - -0.8
Or see this region's nucleotide sequence