Experiment: Bacitracin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt purH and zntR are separated by 292 nucleotides zntR and Sama_0397 overlap by 10 nucleotides
Sama_0395: purH - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (RefSeq), at 491,215 to 492,804
purH
Sama_0396: zntR - zinc-responsive transcriptional regulator (RefSeq), at 493,097 to 493,630
zntR
Sama_0397: Sama_0397 - hypothetical protein (RefSeq), at 493,621 to 495,093
_0397
Position (kb) 493
494 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 492.227 kb on + strand, within purH at 492.227 kb on + strand, within purH at 492.227 kb on + strand, within purH at 492.228 kb on - strand, within purH at 492.228 kb on - strand, within purH at 492.228 kb on - strand, within purH at 492.228 kb on - strand, within purH at 492.228 kb on - strand, within purH at 492.248 kb on + strand, within purH at 492.249 kb on - strand, within purH at 492.306 kb on + strand, within purH at 492.307 kb on - strand, within purH at 492.338 kb on - strand, within purH at 492.347 kb on + strand, within purH at 492.347 kb on + strand, within purH at 492.347 kb on + strand, within purH at 492.348 kb on - strand, within purH at 492.412 kb on - strand, within purH at 492.412 kb on - strand, within purH at 492.453 kb on + strand, within purH at 492.453 kb on + strand, within purH at 492.454 kb on - strand, within purH at 492.454 kb on - strand, within purH at 492.469 kb on + strand, within purH at 492.489 kb on - strand, within purH at 492.489 kb on - strand, within purH at 492.635 kb on + strand, within purH at 492.636 kb on - strand, within purH at 492.636 kb on - strand, within purH at 492.659 kb on - strand at 492.659 kb on - strand at 492.710 kb on - strand at 492.710 kb on - strand at 492.747 kb on + strand at 492.747 kb on + strand at 492.747 kb on + strand at 492.747 kb on + strand at 492.748 kb on - strand at 492.748 kb on - strand at 492.748 kb on - strand at 492.748 kb on - strand at 492.798 kb on + strand at 492.799 kb on - strand at 492.799 kb on - strand at 492.799 kb on - strand at 492.902 kb on - strand at 492.902 kb on - strand at 492.911 kb on + strand at 492.911 kb on + strand at 492.911 kb on + strand at 492.912 kb on - strand at 492.936 kb on - strand at 492.945 kb on + strand at 492.945 kb on + strand at 492.945 kb on + strand at 492.955 kb on + strand at 492.997 kb on + strand at 492.997 kb on + strand at 492.998 kb on - strand at 492.998 kb on - strand at 493.026 kb on + strand at 493.026 kb on + strand at 493.026 kb on + strand at 493.026 kb on + strand at 493.027 kb on - strand at 493.027 kb on - strand at 493.061 kb on + strand at 493.062 kb on - strand at 493.062 kb on - strand at 493.063 kb on + strand at 493.063 kb on + strand at 493.063 kb on + strand at 493.092 kb on - strand at 493.100 kb on + strand at 493.100 kb on + strand at 493.100 kb on + strand at 493.100 kb on + strand at 493.100 kb on + strand at 493.101 kb on - strand at 493.101 kb on - strand at 493.101 kb on - strand at 493.101 kb on - strand at 493.206 kb on - strand, within zntR at 493.246 kb on + strand, within zntR at 493.246 kb on + strand, within zntR at 493.247 kb on - strand, within zntR at 493.315 kb on + strand, within zntR at 493.316 kb on - strand, within zntR at 493.316 kb on - strand, within zntR at 493.316 kb on - strand, within zntR at 493.379 kb on - strand, within zntR at 493.379 kb on - strand, within zntR at 493.566 kb on + strand, within zntR at 493.566 kb on + strand, within zntR at 493.566 kb on + strand, within zntR at 493.567 kb on - strand, within zntR at 493.591 kb on + strand at 493.756 kb on - strand at 493.884 kb on + strand, within Sama_0397 at 493.884 kb on + strand, within Sama_0397 at 493.884 kb on + strand, within Sama_0397 at 493.884 kb on + strand, within Sama_0397 at 493.916 kb on + strand, within Sama_0397 at 493.916 kb on + strand, within Sama_0397 at 493.921 kb on + strand, within Sama_0397 at 493.921 kb on + strand, within Sama_0397 at 493.921 kb on + strand, within Sama_0397 at 493.922 kb on - strand, within Sama_0397 at 493.942 kb on - strand, within Sama_0397 at 493.982 kb on + strand, within Sama_0397 at 493.982 kb on + strand, within Sama_0397 at 494.000 kb on + strand, within Sama_0397 at 494.016 kb on + strand, within Sama_0397 at 494.058 kb on + strand, within Sama_0397 at 494.071 kb on - strand, within Sama_0397 at 494.078 kb on + strand, within Sama_0397 at 494.079 kb on - strand, within Sama_0397 at 494.079 kb on - strand, within Sama_0397 at 494.331 kb on + strand, within Sama_0397 at 494.334 kb on + strand, within Sama_0397 at 494.334 kb on + strand, within Sama_0397 at 494.334 kb on + strand, within Sama_0397 at 494.334 kb on + strand, within Sama_0397 at 494.334 kb on + strand, within Sama_0397 at 494.334 kb on + strand, within Sama_0397 at 494.334 kb on + strand, within Sama_0397 at 494.334 kb on + strand, within Sama_0397 at 494.334 kb on + strand, within Sama_0397 at 494.334 kb on + strand, within Sama_0397 at 494.334 kb on + strand, within Sama_0397 at 494.334 kb on + strand, within Sama_0397 at 494.335 kb on - strand, within Sama_0397 at 494.335 kb on - strand, within Sama_0397 at 494.335 kb on - strand, within Sama_0397 at 494.335 kb on - strand, within Sama_0397 at 494.335 kb on - strand, within Sama_0397 at 494.335 kb on - strand, within Sama_0397 at 494.335 kb on - strand, within Sama_0397 at 494.335 kb on - strand, within Sama_0397 at 494.436 kb on + strand, within Sama_0397 at 494.436 kb on + strand, within Sama_0397 at 494.436 kb on + strand, within Sama_0397 at 494.436 kb on + strand, within Sama_0397 at 494.436 kb on + strand, within Sama_0397 at 494.437 kb on - strand, within Sama_0397 at 494.437 kb on - strand, within Sama_0397 at 494.437 kb on - strand, within Sama_0397 at 494.454 kb on + strand, within Sama_0397 at 494.466 kb on + strand, within Sama_0397 at 494.466 kb on + strand, within Sama_0397 at 494.554 kb on + strand, within Sama_0397 at 494.554 kb on + strand, within Sama_0397 at 494.554 kb on + strand, within Sama_0397 at 494.555 kb on - strand, within Sama_0397 at 494.555 kb on - strand, within Sama_0397 at 494.555 kb on - strand, within Sama_0397 at 494.555 kb on - strand, within Sama_0397 at 494.555 kb on - strand, within Sama_0397 at 494.555 kb on - strand, within Sama_0397 at 494.555 kb on - strand, within Sama_0397 at 494.600 kb on + strand, within Sama_0397 at 494.600 kb on + strand, within Sama_0397 at 494.601 kb on - strand, within Sama_0397 at 494.601 kb on - strand, within Sama_0397 at 494.624 kb on + strand, within Sama_0397 at 494.624 kb on + strand, within Sama_0397
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.125 mg/ml remove 492,227 + purH Sama_0395 0.64 -0.4 492,227 + purH Sama_0395 0.64 +2.2 492,227 + purH Sama_0395 0.64 -1.2 492,228 - purH Sama_0395 0.64 +0.3 492,228 - purH Sama_0395 0.64 +0.8 492,228 - purH Sama_0395 0.64 -0.3 492,228 - purH Sama_0395 0.64 +0.6 492,228 - purH Sama_0395 0.64 +0.5 492,248 + purH Sama_0395 0.65 -0.3 492,249 - purH Sama_0395 0.65 +0.2 492,306 + purH Sama_0395 0.69 +0.9 492,307 - purH Sama_0395 0.69 +1.0 492,338 - purH Sama_0395 0.71 -0.3 492,347 + purH Sama_0395 0.71 +0.9 492,347 + purH Sama_0395 0.71 -0.2 492,347 + purH Sama_0395 0.71 +0.8 492,348 - purH Sama_0395 0.71 +1.1 492,412 - purH Sama_0395 0.75 +0.2 492,412 - purH Sama_0395 0.75 +0.6 492,453 + purH Sama_0395 0.78 +0.8 492,453 + purH Sama_0395 0.78 +0.1 492,454 - purH Sama_0395 0.78 -1.4 492,454 - purH Sama_0395 0.78 +0.6 492,469 + purH Sama_0395 0.79 +0.7 492,489 - purH Sama_0395 0.80 +1.5 492,489 - purH Sama_0395 0.80 +1.6 492,635 + purH Sama_0395 0.89 +1.3 492,636 - purH Sama_0395 0.89 +0.1 492,636 - purH Sama_0395 0.89 +1.1 492,659 - +0.3 492,659 - +1.5 492,710 - +3.1 492,710 - +0.7 492,747 + +0.3 492,747 + -0.2 492,747 + +2.1 492,747 + +0.4 492,748 - +0.4 492,748 - +0.8 492,748 - -0.1 492,748 - +1.4 492,798 + +0.3 492,799 - +1.6 492,799 - -1.4 492,799 - -0.5 492,902 - +0.4 492,902 - +1.5 492,911 + +0.2 492,911 + -0.2 492,911 + +0.5 492,912 - +0.1 492,936 - +1.1 492,945 + -0.3 492,945 + -0.3 492,945 + -0.2 492,955 + +0.9 492,997 + +0.3 492,997 + -0.5 492,998 - -0.3 492,998 - +0.8 493,026 + +1.1 493,026 + +0.0 493,026 + -0.4 493,026 + +0.2 493,027 - +1.1 493,027 - -0.1 493,061 + -0.2 493,062 - -1.0 493,062 - -0.3 493,063 + +1.6 493,063 + -0.2 493,063 + -0.1 493,092 - +0.2 493,100 + -1.9 493,100 + -2.4 493,100 + -1.4 493,100 + +0.8 493,100 + -0.9 493,101 - -1.0 493,101 - -0.5 493,101 - -1.5 493,101 - -0.7 493,206 - zntR Sama_0396 0.20 -1.5 493,246 + zntR Sama_0396 0.28 -0.9 493,246 + zntR Sama_0396 0.28 -1.6 493,247 - zntR Sama_0396 0.28 -0.7 493,315 + zntR Sama_0396 0.41 -0.9 493,316 - zntR Sama_0396 0.41 -0.7 493,316 - zntR Sama_0396 0.41 -0.8 493,316 - zntR Sama_0396 0.41 -0.5 493,379 - zntR Sama_0396 0.53 -0.4 493,379 - zntR Sama_0396 0.53 -0.5 493,566 + zntR Sama_0396 0.88 +1.4 493,566 + zntR Sama_0396 0.88 -0.9 493,566 + zntR Sama_0396 0.88 -0.7 493,567 - zntR Sama_0396 0.88 -3.0 493,591 + -1.1 493,756 - -0.7 493,884 + Sama_0397 0.18 +0.6 493,884 + Sama_0397 0.18 -2.1 493,884 + Sama_0397 0.18 -1.6 493,884 + Sama_0397 0.18 +0.3 493,916 + Sama_0397 0.20 -0.7 493,916 + Sama_0397 0.20 +0.1 493,921 + Sama_0397 0.20 -1.9 493,921 + Sama_0397 0.20 -0.9 493,921 + Sama_0397 0.20 +0.5 493,922 - Sama_0397 0.20 -2.8 493,942 - Sama_0397 0.22 -2.2 493,982 + Sama_0397 0.25 -2.0 493,982 + Sama_0397 0.25 -0.2 494,000 + Sama_0397 0.26 -1.8 494,016 + Sama_0397 0.27 -2.4 494,058 + Sama_0397 0.30 -1.7 494,071 - Sama_0397 0.31 -1.2 494,078 + Sama_0397 0.31 -2.8 494,079 - Sama_0397 0.31 +0.1 494,079 - Sama_0397 0.31 -0.1 494,331 + Sama_0397 0.48 -1.2 494,334 + Sama_0397 0.48 -2.2 494,334 + Sama_0397 0.48 -2.0 494,334 + Sama_0397 0.48 -0.6 494,334 + Sama_0397 0.48 -1.4 494,334 + Sama_0397 0.48 -0.8 494,334 + Sama_0397 0.48 -1.1 494,334 + Sama_0397 0.48 -0.9 494,334 + Sama_0397 0.48 -1.4 494,334 + Sama_0397 0.48 -1.9 494,334 + Sama_0397 0.48 -0.9 494,334 + Sama_0397 0.48 -1.2 494,334 + Sama_0397 0.48 -1.0 494,335 - Sama_0397 0.48 -0.9 494,335 - Sama_0397 0.48 -1.0 494,335 - Sama_0397 0.48 -1.9 494,335 - Sama_0397 0.48 -0.2 494,335 - Sama_0397 0.48 -0.5 494,335 - Sama_0397 0.48 -0.2 494,335 - Sama_0397 0.48 -0.4 494,335 - Sama_0397 0.48 -0.2 494,436 + Sama_0397 0.55 -0.2 494,436 + Sama_0397 0.55 -1.7 494,436 + Sama_0397 0.55 -1.1 494,436 + Sama_0397 0.55 +0.2 494,436 + Sama_0397 0.55 -1.1 494,437 - Sama_0397 0.55 -0.6 494,437 - Sama_0397 0.55 -1.5 494,437 - Sama_0397 0.55 +0.8 494,454 + Sama_0397 0.57 -1.7 494,466 + Sama_0397 0.57 -2.1 494,466 + Sama_0397 0.57 -3.1 494,554 + Sama_0397 0.63 -0.8 494,554 + Sama_0397 0.63 -2.2 494,554 + Sama_0397 0.63 -0.9 494,555 - Sama_0397 0.63 +0.2 494,555 - Sama_0397 0.63 -0.1 494,555 - Sama_0397 0.63 -1.5 494,555 - Sama_0397 0.63 -3.2 494,555 - Sama_0397 0.63 -1.7 494,555 - Sama_0397 0.63 -1.1 494,555 - Sama_0397 0.63 -1.7 494,600 + Sama_0397 0.66 -0.9 494,600 + Sama_0397 0.66 -1.3 494,601 - Sama_0397 0.67 -1.3 494,601 - Sama_0397 0.67 -2.6 494,624 + Sama_0397 0.68 -2.2 494,624 + Sama_0397 0.68 -1.7
Or see this region's nucleotide sequence