Strain Fitness in Shewanella amazonensis SB2B around Sama_3055

Experiment: sodium fluoride 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	sodium fluoride 50 mM
3,630,005	-				-1.3
3,630,045	-				-0.5
3,630,045	-				-1.5
3,630,091	-				-1.3
3,630,091	-				+0.5
3,630,097	-				+0.8
3,630,123	+				+3.5
3,630,146	-				-1.0
3,630,153	-		Sama_3053	0.11	-0.3
3,630,171	+		Sama_3053	0.20	+0.4
3,630,197	-		Sama_3053	0.33	-0.4
3,630,197	-		Sama_3053	0.33	-1.7
3,630,301	+		Sama_3053	0.86	-0.3
3,630,301	+		Sama_3053	0.86	-1.5
3,630,301	+		Sama_3053	0.86	-0.6
3,630,302	-		Sama_3053	0.86	+0.3
3,630,317	-				+1.5
3,630,323	-				-1.1
3,630,323	-				+0.3
3,630,323	-				+0.3
3,630,349	+				+0.1
3,630,373	+				-0.5
3,630,373	+				-0.2
3,630,374	-				-1.8
3,630,386	+				-0.5
3,630,386	+				-0.4
3,630,387	-				-1.8
3,630,387	-				-0.8
3,630,412	-				-0.8
3,630,420	+				-0.9
3,630,420	+				+0.1
3,630,420	+				-0.5
3,630,421	-				-0.6
3,630,466	+				-0.5
3,630,466	+				-1.6
3,630,467	-				+0.9
3,630,560	+		Sama_3054	0.35	-0.0
3,630,561	-		Sama_3054	0.36	-0.0
3,630,642	+		Sama_3054	0.66	-1.3
3,630,643	-		Sama_3054	0.66	-0.1
3,630,643	-		Sama_3054	0.66	+0.1
3,630,650	+		Sama_3054	0.69	-2.5
3,630,650	+		Sama_3054	0.69	-0.5
3,630,650	+		Sama_3054	0.69	+1.7
3,630,650	+		Sama_3054	0.69	+0.2
3,630,650	+		Sama_3054	0.69	+0.8
3,630,651	-		Sama_3054	0.69	-0.2
3,630,651	-		Sama_3054	0.69	-0.8
3,630,651	-		Sama_3054	0.69	+0.2
3,630,651	-		Sama_3054	0.69	+0.6
3,630,696	-		Sama_3054	0.86	-1.2
3,630,758	+				-0.1
3,630,758	+				-0.3
3,630,759	-				-0.3
3,630,759	-				+1.3
3,630,759	-				+0.8
3,630,772	+				+1.5
3,630,775	+				+0.8
3,630,776	-				+0.5
3,630,776	-				-2.0
3,630,776	-				+0.2
3,630,821	-				+0.1
3,630,895	-				-0.9
3,630,941	+				-2.4
3,630,941	+				-0.2
3,630,941	+				-2.2
3,630,942	-				-1.4
3,630,951	+				+0.2
3,630,952	-				-2.1
3,630,968	-				-0.0
3,630,968	-				-0.7
3,630,987	-				-0.8
3,631,061	+		Sama_3055	0.12	+0.2
3,631,062	-		Sama_3055	0.12	-1.9
3,631,062	-		Sama_3055	0.12	-0.7
3,631,062	-		Sama_3055	0.12	-0.3
3,631,086	+		Sama_3055	0.15	-0.1
3,631,086	+		Sama_3055	0.15	+0.7
3,631,087	-		Sama_3055	0.15	-0.9
3,631,087	-		Sama_3055	0.15	-2.0
3,631,087	-		Sama_3055	0.15	-0.3
3,631,087	-		Sama_3055	0.15	-0.1
3,631,126	-		Sama_3055	0.19	-1.7
3,631,126	-		Sama_3055	0.19	-0.6
3,631,127	+		Sama_3055	0.19	-2.0
3,631,127	+		Sama_3055	0.19	-2.2
3,631,127	+		Sama_3055	0.19	-2.4
3,631,127	+		Sama_3055	0.19	-1.8
3,631,127	+		Sama_3055	0.19	+0.1
3,631,128	-		Sama_3055	0.19	-0.6
3,631,128	-		Sama_3055	0.19	-1.2
3,631,128	-		Sama_3055	0.19	-2.7
3,631,128	-		Sama_3055	0.19	+0.8
3,631,128	-		Sama_3055	0.19	+0.7
3,631,128	-		Sama_3055	0.19	-2.1
3,631,128	-		Sama_3055	0.19	+1.0
3,631,128	-		Sama_3055	0.19	-1.3
3,631,128	-		Sama_3055	0.19	+1.0
3,631,128	-		Sama_3055	0.19	-1.0
3,631,128	-		Sama_3055	0.19	+1.0
3,631,165	+		Sama_3055	0.23	-1.8
3,631,165	+		Sama_3055	0.23	-1.0
3,631,165	+		Sama_3055	0.23	-0.5
3,631,165	+		Sama_3055	0.23	-2.3
3,631,166	-		Sama_3055	0.23	+0.2
3,631,166	-		Sama_3055	0.23	-0.8
3,631,166	-		Sama_3055	0.23	+1.2
3,631,166	-		Sama_3055	0.23	+0.0
3,631,166	-		Sama_3055	0.23	-0.8
3,631,166	-		Sama_3055	0.23	+0.5
3,631,166	-		Sama_3055	0.23	-1.6
3,631,166	-		Sama_3055	0.23	-0.9
3,631,166	-		Sama_3055	0.23	-0.0
3,631,166	-		Sama_3055	0.23	-0.4
3,631,208	-		Sama_3055	0.27	-0.8
3,631,212	+		Sama_3055	0.28	-0.2
3,631,212	+		Sama_3055	0.28	-0.3
3,631,213	-		Sama_3055	0.28	-1.0
3,631,213	-		Sama_3055	0.28	-1.6
3,631,213	-		Sama_3055	0.28	-1.8
3,631,215	-		Sama_3055	0.28	-0.9
3,631,215	-		Sama_3055	0.28	-1.7
3,631,275	+		Sama_3055	0.34	-0.0
3,631,276	-		Sama_3055	0.34	-3.3
3,631,285	+		Sama_3055	0.35	-1.3
3,631,285	+		Sama_3055	0.35	-0.9
3,631,285	+		Sama_3055	0.35	-2.3
3,631,286	-		Sama_3055	0.35	+0.2
3,631,286	-		Sama_3055	0.35	-1.3
3,631,286	-		Sama_3055	0.35	-1.5
3,631,286	-		Sama_3055	0.35	-1.3
3,631,286	-		Sama_3055	0.35	-0.0
3,631,286	-		Sama_3055	0.35	-0.4
3,631,286	-		Sama_3055	0.35	-0.2
3,631,287	+		Sama_3055	0.35	+0.5
3,631,287	+		Sama_3055	0.35	+0.1
3,631,287	+		Sama_3055	0.35	-0.5
3,631,287	+		Sama_3055	0.35	-2.5
3,631,287	+		Sama_3055	0.35	-1.5
3,631,287	+		Sama_3055	0.35	-0.3
3,631,287	+		Sama_3055	0.35	-0.0
3,631,287	+		Sama_3055	0.35	-0.8
3,631,287	+		Sama_3055	0.35	-1.1
3,631,287	+		Sama_3055	0.35	-0.6
3,631,287	+		Sama_3055	0.35	-1.2
3,631,287	+		Sama_3055	0.35	-0.5
3,631,287	+		Sama_3055	0.35	-2.1
3,631,287	+		Sama_3055	0.35	+0.3
3,631,287	+		Sama_3055	0.35	-1.0
3,631,287	+		Sama_3055	0.35	-0.8
3,631,287	+		Sama_3055	0.35	-0.9
3,631,287	+		Sama_3055	0.35	-2.0
3,631,287	+		Sama_3055	0.35	+0.4
3,631,287	+		Sama_3055	0.35	-1.0
3,631,288	-		Sama_3055	0.35	+0.2
3,631,288	-		Sama_3055	0.35	-1.7
3,631,288	-		Sama_3055	0.35	-0.0
3,631,288	-		Sama_3055	0.35	-0.3
3,631,288	-		Sama_3055	0.35	-0.8
3,631,288	-		Sama_3055	0.35	-2.0
3,631,288	-		Sama_3055	0.35	-0.0
3,631,288	-		Sama_3055	0.35	-0.5
3,631,288	-		Sama_3055	0.35	-2.5
3,631,288	-		Sama_3055	0.35	+0.2
3,631,288	-		Sama_3055	0.35	-0.6
3,631,288	-		Sama_3055	0.35	+0.3
3,631,288	-		Sama_3055	0.35	-2.2
3,631,288	-		Sama_3055	0.35	-0.9
3,631,288	-		Sama_3055	0.35	+0.2
3,631,288	-		Sama_3055	0.35	+0.4
3,631,288	-		Sama_3055	0.35	-0.8
3,631,288	-		Sama_3055	0.35	-2.6
3,631,288	-		Sama_3055	0.35	-0.6
3,631,308	+		Sama_3055	0.38	-1.6
3,631,308	+		Sama_3055	0.38	-1.4
3,631,308	+		Sama_3055	0.38	-1.5
3,631,309	-		Sama_3055	0.38	-2.5
3,631,309	-		Sama_3055	0.38	-0.5
3,631,309	-		Sama_3055	0.38	-1.0
3,631,309	-		Sama_3055	0.38	-0.0
3,631,309	-		Sama_3055	0.38	-0.3
3,631,309	-		Sama_3055	0.38	-2.5
3,631,309	-		Sama_3055	0.38	-0.3
3,631,328	+		Sama_3055	0.40	-2.0
3,631,346	+		Sama_3055	0.41	-1.0
3,631,347	-		Sama_3055	0.41	-1.9
3,631,347	-		Sama_3055	0.41	-0.8
3,631,347	-		Sama_3055	0.41	-1.0
3,631,428	+		Sama_3055	0.50	-0.6
3,631,428	+		Sama_3055	0.50	-0.0
3,631,428	+		Sama_3055	0.50	+1.0
3,631,429	-		Sama_3055	0.50	-2.5
3,631,429	-		Sama_3055	0.50	+0.1
3,631,431	+		Sama_3055	0.50	+0.2
3,631,432	-		Sama_3055	0.50	-0.7
3,631,432	-		Sama_3055	0.50	-1.3
3,631,432	-		Sama_3055	0.50	+0.8
3,631,432	-		Sama_3055	0.50	-1.4
3,631,437	+		Sama_3055	0.51	+0.1
3,631,487	+		Sama_3055	0.56	-0.5
3,631,487	+		Sama_3055	0.56	-0.8
3,631,488	-		Sama_3055	0.56	-0.5
3,631,520	+		Sama_3055	0.59	+0.6
3,631,534	+		Sama_3055	0.61	-1.2
3,631,534	+		Sama_3055	0.61	+2.0
3,631,535	-		Sama_3055	0.61	-1.7
3,631,535	-		Sama_3055	0.61	+0.1
3,631,535	-		Sama_3055	0.61	-0.8
3,631,555	-		Sama_3055	0.63	-1.6
3,631,561	+		Sama_3055	0.63	-1.7
3,631,561	+		Sama_3055	0.63	-1.5
3,631,562	-		Sama_3055	0.63	-1.3
3,631,581	+		Sama_3055	0.65	-2.5
3,631,581	+		Sama_3055	0.65	-2.1
3,631,582	-		Sama_3055	0.65	+0.5
3,631,622	-		Sama_3055	0.70	-0.6
3,631,642	+		Sama_3055	0.72	-1.4
3,631,642	+		Sama_3055	0.72	-1.6
3,631,642	+		Sama_3055	0.72	-1.8
3,631,642	+		Sama_3055	0.72	-1.4
3,631,643	-		Sama_3055	0.72	+0.8
3,631,643	-		Sama_3055	0.72	+0.8
3,631,643	-		Sama_3055	0.72	+0.5
3,631,643	-		Sama_3055	0.72	-2.8
3,631,643	-		Sama_3055	0.72	+1.2
3,631,643	-		Sama_3055	0.72	-1.2
3,631,643	-		Sama_3055	0.72	-0.9
3,631,651	-		Sama_3055	0.72	-2.1
3,631,664	+		Sama_3055	0.74	-0.0
3,631,758	-		Sama_3055	0.83	-0.5
3,631,767	-		Sama_3055	0.84	-1.6
3,631,767	-		Sama_3055	0.84	-1.3
3,631,767	-		Sama_3055	0.84	-0.5
3,631,767	-		Sama_3055	0.84	-1.5
3,631,767	-		Sama_3055	0.84	-1.9
3,631,815	-		Sama_3055	0.89	+0.6
3,631,850	+				-0.0
3,631,850	+				-0.6
3,631,856	+				-1.2
3,631,856	+				-0.8
3,631,857	-				-0.5
3,631,857	-				-0.8
3,631,895	-				-1.1
3,631,938	+				-0.8
3,631,938	+				-0.0
3,631,939	-				+0.7
3,631,939	-				+0.4
3,631,939	-				+0.6
3,631,947	+				+1.1
3,631,948	-				-0.9
3,631,959	+				-2.1
3,631,993	+				-1.8
3,631,993	+				+0.5
3,631,994	-				-1.6
3,631,994	-				-1.4
3,631,994	-				-0.1
3,631,994	-				-0.1
3,631,994	-				-1.2
3,631,996	+				-0.2
3,631,997	-				+1.5
3,632,045	+				-0.3
3,632,045	+				+0.1
3,632,045	+				-0.8
3,632,045	+				-1.1
3,632,046	-				-0.7
3,632,046	-				-1.5
3,632,046	-				-0.3
3,632,051	+				-0.0
3,632,051	+				-0.4
3,632,052	-				-0.0
3,632,057	+				-1.4
3,632,057	+				-0.2
3,632,057	+				-1.5
3,632,058	-				-0.3
3,632,058	-				+1.7
3,632,058	-				-0.2
3,632,058	-				+0.7
3,632,090	+				-0.6
3,632,126	+				-2.6
3,632,127	-				-0.0
3,632,140	+				+0.2
3,632,141	-				-0.6
3,632,141	-				-1.0
3,632,168	+		Sama_3056	0.12	+0.2
3,632,168	+		Sama_3056	0.12	-0.4
3,632,168	+		Sama_3056	0.12	-0.5
3,632,168	+		Sama_3056	0.12	+0.7
3,632,168	+		Sama_3056	0.12	-0.3
3,632,168	+		Sama_3056	0.12	-0.3
3,632,168	+		Sama_3056	0.12	-1.5
3,632,168	+		Sama_3056	0.12	-1.3
3,632,168	+		Sama_3056	0.12	+1.0
3,632,168	+		Sama_3056	0.12	+0.9
3,632,168	+		Sama_3056	0.12	+0.8
3,632,169	-		Sama_3056	0.12	-1.1
3,632,169	-		Sama_3056	0.12	-0.5
3,632,169	-		Sama_3056	0.12	-0.8
3,632,169	-		Sama_3056	0.12	-2.0
3,632,169	-		Sama_3056	0.12	-2.3
3,632,169	-		Sama_3056	0.12	-1.3
3,632,169	-		Sama_3056	0.12	+0.7
3,632,169	-		Sama_3056	0.12	-1.6
3,632,236	+		Sama_3056	0.27	+0.1
3,632,236	+		Sama_3056	0.27	-0.6
3,632,236	+		Sama_3056	0.27	-2.2
3,632,236	+		Sama_3056	0.27	-0.3
3,632,236	+		Sama_3056	0.27	-0.9
3,632,236	+		Sama_3056	0.27	+0.3
3,632,236	+		Sama_3056	0.27	-1.2
3,632,237	-		Sama_3056	0.27	-0.2
3,632,237	-		Sama_3056	0.27	-1.8
3,632,237	-		Sama_3056	0.27	-0.5
3,632,237	-		Sama_3056	0.27	-0.5
3,632,237	-		Sama_3056	0.27	-0.1
3,632,237	-		Sama_3056	0.27	+0.1
3,632,237	-		Sama_3056	0.27	-0.3
3,632,257	+		Sama_3056	0.31	-1.0
3,632,257	+		Sama_3056	0.31	-0.8
3,632,257	+		Sama_3056	0.31	-0.4
3,632,257	+		Sama_3056	0.31	-0.1
3,632,258	-		Sama_3056	0.31	-1.0
3,632,258	-		Sama_3056	0.31	-1.0
3,632,279	+		Sama_3056	0.36	+0.2
3,632,279	+		Sama_3056	0.36	-0.2
3,632,279	+		Sama_3056	0.36	-1.9
3,632,279	+		Sama_3056	0.36	+1.1
3,632,280	-		Sama_3056	0.36	-0.8
3,632,280	-		Sama_3056	0.36	+1.3
3,632,280	-		Sama_3056	0.36	-1.0
3,632,280	-		Sama_3056	0.36	-0.3
3,632,280	-		Sama_3056	0.36	-0.7
3,632,317	+		Sama_3056	0.44	-1.0
3,632,327	+		Sama_3056	0.46	+1.2
3,632,327	+		Sama_3056	0.46	-2.1
3,632,327	+		Sama_3056	0.46	-1.5
3,632,328	-		Sama_3056	0.46	+0.2
3,632,328	-		Sama_3056	0.46	+0.0
3,632,328	-		Sama_3056	0.46	-2.9
3,632,328	-		Sama_3056	0.46	-0.9
3,632,328	-		Sama_3056	0.46	-0.7
3,632,328	-		Sama_3056	0.46	-1.2
3,632,372	+		Sama_3056	0.56	-0.0
3,632,372	+		Sama_3056	0.56	+0.8
3,632,372	+		Sama_3056	0.56	-0.3
3,632,372	+		Sama_3056	0.56	-0.8
3,632,372	+		Sama_3056	0.56	+2.3
3,632,372	+		Sama_3056	0.56	-2.2
3,632,372	+		Sama_3056	0.56	-0.0
3,632,372	+		Sama_3056	0.56	+0.8
3,632,372	+		Sama_3056	0.56	-0.7
3,632,372	+		Sama_3056	0.56	-2.0
3,632,372	+		Sama_3056	0.56	+0.5
3,632,372	+		Sama_3056	0.56	-0.2
3,632,372	+		Sama_3056	0.56	-1.6
3,632,372	+		Sama_3056	0.56	-0.1
3,632,372	+		Sama_3056	0.56	-0.0
3,632,372	+		Sama_3056	0.56	-0.2
3,632,372	+		Sama_3056	0.56	-2.3
3,632,373	-		Sama_3056	0.56	+0.2
3,632,373	-		Sama_3056	0.56	+0.1
3,632,373	-		Sama_3056	0.56	+1.5
3,632,373	-		Sama_3056	0.56	-1.0
3,632,373	-		Sama_3056	0.56	+0.3
3,632,373	-		Sama_3056	0.56	-1.3
3,632,393	+		Sama_3056	0.60	-0.6
3,632,394	-		Sama_3056	0.61	+1.2
3,632,394	-		Sama_3056	0.61	-1.1
3,632,394	-		Sama_3056	0.61	-0.3
3,632,394	-		Sama_3056	0.61	+0.0
3,632,436	+		Sama_3056	0.70	-0.4
3,632,483	+		Sama_3056	0.80	+0.3
3,632,484	-		Sama_3056	0.80	+1.0
3,632,484	-		Sama_3056	0.80	-0.5
3,632,516	+		Sama_3056	0.87	-1.8
3,632,517	-		Sama_3056	0.87	-1.1
3,632,517	-		Sama_3056	0.87	-0.0
3,632,550	+				-0.0
3,632,550	+				+0.5
3,632,550	+				+0.4
3,632,551	-				-0.2
3,632,551	-				-0.3
3,632,551	-				+0.5
3,632,551	-				+0.2
3,632,582	+				+0.2
3,632,582	+				+0.4
3,632,590	+				+0.4
3,632,590	+				-0.6
3,632,621	-				+0.4
3,632,621	-				-1.0