Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c27560

Experiment: marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth
2,869,849	+		PGA1_c27540	0.65	-0.1
2,869,857	-		PGA1_c27540	0.65	-0.5
2,869,857	-		PGA1_c27540	0.65	+0.9
2,869,857	-		PGA1_c27540	0.65	+1.3
2,869,857	-		PGA1_c27540	0.65	-0.0
2,869,857	-		PGA1_c27540	0.65	-0.4
2,869,925	+		PGA1_c27540	0.71	+0.6
2,869,925	+		PGA1_c27540	0.71	-0.9
2,869,933	-		PGA1_c27540	0.72	+1.7
2,869,981	+		PGA1_c27540	0.76	-2.0
2,870,000	+		PGA1_c27540	0.78	-0.0
2,870,037	-		PGA1_c27540	0.81	-0.2
2,870,060	+		PGA1_c27540	0.83	-2.5
2,870,072	+		PGA1_c27540	0.84	+1.2
2,870,085	-		PGA1_c27540	0.85	-3.6
2,870,086	-		PGA1_c27540	0.85	-3.6
2,870,146	+				-2.1
2,870,154	-				-2.8
2,870,154	-				-0.2
2,870,162	+				+0.3
2,870,205	+				+0.9
2,870,205	+				-0.1
2,870,243	-				+0.5
2,870,244	-				-0.1
2,870,246	+				+0.5
2,870,246	+				+1.0
2,870,251	+				+1.3
2,870,252	+				+0.5
2,870,257	+				-0.0
2,870,259	-				-0.1
2,870,262	+				+0.4
2,870,285	+				-1.6
2,870,327	+		PGA1_c27550	0.14	-1.5
2,870,348	-		PGA1_c27550	0.17	+1.0
2,870,422	+		PGA1_c27550	0.30	-0.3
2,870,451	-		PGA1_c27550	0.36	-1.6
2,870,463	+		PGA1_c27550	0.38	+0.3
2,870,529	+		PGA1_c27550	0.49	+0.3
2,870,562	-		PGA1_c27550	0.55	+0.0
2,870,569	+		PGA1_c27550	0.57	-2.5
2,870,589	+		PGA1_c27550	0.60	-1.7
2,870,589	+		PGA1_c27550	0.60	-1.4
2,870,589	+		PGA1_c27550	0.60	-0.8
2,870,597	-		PGA1_c27550	0.62	+0.0
2,870,597	-		PGA1_c27550	0.62	-3.0
2,870,597	-		PGA1_c27550	0.62	+0.1
2,870,597	-		PGA1_c27550	0.62	-0.5
2,870,694	-		PGA1_c27550	0.79	+1.3
2,870,710	+		PGA1_c27550	0.82	+1.8
2,870,710	+		PGA1_c27550	0.82	-0.3
2,870,710	+		PGA1_c27550	0.82	+0.1
2,870,710	+		PGA1_c27550	0.82	-3.0
2,870,710	+		PGA1_c27550	0.82	-1.4
2,870,710	+		PGA1_c27550	0.82	+0.3
2,870,710	+		PGA1_c27550	0.82	-2.0
2,870,716	-		PGA1_c27550	0.83	-2.5
2,870,716	-		PGA1_c27550	0.83	-0.8
2,870,716	-		PGA1_c27550	0.83	-2.4
2,870,718	-		PGA1_c27550	0.83	+1.6
2,870,718	-		PGA1_c27550	0.83	-2.0
2,870,718	-		PGA1_c27550	0.83	+0.9
2,870,718	-		PGA1_c27550	0.83	-2.2
2,870,718	-		PGA1_c27550	0.83	-1.0
2,870,718	-		PGA1_c27550	0.83	-0.4
2,870,718	-		PGA1_c27550	0.83	-0.1
2,870,718	-		PGA1_c27550	0.83	+0.8
2,870,718	-		PGA1_c27550	0.83	-3.6
2,870,718	-		PGA1_c27550	0.83	-0.9
2,870,718	-		PGA1_c27550	0.83	-0.7
2,870,718	-		PGA1_c27550	0.83	-0.5
2,870,718	-		PGA1_c27550	0.83	-1.4
2,870,720	+		PGA1_c27550	0.83	-0.4
2,870,733	-		PGA1_c27550	0.86	-2.1
2,870,733	-		PGA1_c27550	0.86	-3.3
2,870,733	-		PGA1_c27550	0.86	-1.7
2,870,788	+				-0.3
2,870,798	+				+0.8
2,870,803	+				-2.0
2,870,806	-				-1.1
2,870,806	-				-0.8
2,870,806	-				-0.8
2,870,910	+				+1.5
2,870,946	+		PGA1_c27560	0.11	-0.1
2,870,946	+		PGA1_c27560	0.11	-3.7
2,870,954	-		PGA1_c27560	0.12	+0.0
2,870,954	-		PGA1_c27560	0.12	-0.7
2,870,954	-		PGA1_c27560	0.12	-1.8
2,870,988	-		PGA1_c27560	0.14	-2.1
2,871,050	+		PGA1_c27560	0.19	-0.8
2,871,050	+		PGA1_c27560	0.19	-1.1
2,871,050	+		PGA1_c27560	0.19	-2.8
2,871,058	-		PGA1_c27560	0.20	-0.3
2,871,058	-		PGA1_c27560	0.20	+0.5
2,871,058	-		PGA1_c27560	0.20	-0.6
2,871,058	-		PGA1_c27560	0.20	-0.2
2,871,058	-		PGA1_c27560	0.20	+0.4
2,871,075	-		PGA1_c27560	0.21	-0.6
2,871,075	-		PGA1_c27560	0.21	-1.3
2,871,086	+		PGA1_c27560	0.22	+0.9
2,871,111	-		PGA1_c27560	0.24	+0.0
2,871,131	-		PGA1_c27560	0.26	-3.1
2,871,133	+		PGA1_c27560	0.26	-3.0
2,871,140	+		PGA1_c27560	0.27	+0.6
2,871,140	+		PGA1_c27560	0.27	-2.0
2,871,141	-		PGA1_c27560	0.27	-0.3
2,871,148	-		PGA1_c27560	0.27	-3.1
2,871,148	-		PGA1_c27560	0.27	-3.1
2,871,148	-		PGA1_c27560	0.27	-2.0
2,871,148	-		PGA1_c27560	0.27	-1.2
2,871,148	-		PGA1_c27560	0.27	-0.4
2,871,148	-		PGA1_c27560	0.27	-0.3
2,871,153	+		PGA1_c27560	0.28	+1.7
2,871,163	+		PGA1_c27560	0.29	+0.5
2,871,195	+		PGA1_c27560	0.31	-1.0
2,871,195	+		PGA1_c27560	0.31	-2.6
2,871,203	-		PGA1_c27560	0.32	-0.9
2,871,203	-		PGA1_c27560	0.32	-3.2
2,871,211	-		PGA1_c27560	0.33	+0.5
2,871,319	-		PGA1_c27560	0.41	-3.1
2,871,398	+		PGA1_c27560	0.48	-0.1
2,871,419	+		PGA1_c27560	0.50	+0.3
2,871,431	+		PGA1_c27560	0.50	+0.3
2,871,432	-		PGA1_c27560	0.51	-0.9
2,871,438	-		PGA1_c27560	0.51	-0.2
2,871,463	+		PGA1_c27560	0.53	+0.7
2,871,466	-		PGA1_c27560	0.53	-0.1
2,871,489	+		PGA1_c27560	0.55	-2.6
2,871,489	+		PGA1_c27560	0.55	-2.1
2,871,489	+		PGA1_c27560	0.55	-1.4
2,871,489	+		PGA1_c27560	0.55	-0.5
2,871,490	-		PGA1_c27560	0.55	+0.1
2,871,490	-		PGA1_c27560	0.55	-2.5
2,871,497	-		PGA1_c27560	0.56	-3.5
2,871,497	-		PGA1_c27560	0.56	-0.4
2,871,615	+		PGA1_c27560	0.66	-1.0
2,871,615	+		PGA1_c27560	0.66	-2.4
2,871,615	+		PGA1_c27560	0.66	-0.8
2,871,615	+		PGA1_c27560	0.66	+2.0
2,871,688	+		PGA1_c27560	0.71	-0.5
2,871,737	-		PGA1_c27560	0.75	-1.1
2,871,740	-		PGA1_c27560	0.76	+0.6
2,871,773	-		PGA1_c27560	0.78	+0.4
2,871,794	-		PGA1_c27560	0.80	-1.3
2,871,808	-		PGA1_c27560	0.81	-1.3
2,871,819	+		PGA1_c27560	0.82	-1.1
2,871,827	-		PGA1_c27560	0.83	+0.3
2,871,914	+				+0.2
2,871,935	+				-1.7
2,871,943	-				+0.1
2,871,943	-				+1.5
2,871,952	+				+0.7
2,872,058	+				-0.2
2,872,077	+				+0.8
2,872,085	-				-1.8
2,872,116	+		PGA1_c27570	0.15	-1.6
2,872,116	+		PGA1_c27570	0.15	-0.4
2,872,132	+		PGA1_c27570	0.18	+0.2
2,872,156	+		PGA1_c27570	0.23	-0.7
2,872,156	+		PGA1_c27570	0.23	-3.6
2,872,156	+		PGA1_c27570	0.23	-1.2
2,872,156	+		PGA1_c27570	0.23	-0.1
2,872,156	+		PGA1_c27570	0.23	-1.8
2,872,156	+		PGA1_c27570	0.23	+2.1
2,872,156	+		PGA1_c27570	0.23	+0.9
2,872,156	+		PGA1_c27570	0.23	+0.4
2,872,164	-		PGA1_c27570	0.24	-0.3
2,872,164	-		PGA1_c27570	0.24	-4.1
2,872,164	-		PGA1_c27570	0.24	+1.5
2,872,164	-		PGA1_c27570	0.24	-0.3
2,872,164	-		PGA1_c27570	0.24	-2.1
2,872,164	-		PGA1_c27570	0.24	+0.1
2,872,204	-		PGA1_c27570	0.31	-1.8
2,872,204	-		PGA1_c27570	0.31	+0.3
2,872,233	+		PGA1_c27570	0.37	+0.5
2,872,257	+		PGA1_c27570	0.41	-0.7
2,872,387	-		PGA1_c27570	0.65	-0.6
2,872,506	-		PGA1_c27570	0.87	+0.8
2,872,506	-		PGA1_c27570	0.87	+0.5
2,872,506	-		PGA1_c27570	0.87	+1.9
2,872,516	-		PGA1_c27570	0.88	-0.6
2,872,603	-				-2.1
2,872,622	+				-0.8
2,872,630	-				-2.0
2,872,630	-				-0.5
2,872,630	-				+0.2
2,872,630	-				-1.0
2,872,630	-				+0.4
2,872,630	-				-2.7
2,872,630	-				+0.7
2,872,705	+		PGA1_c27580	0.17	-1.6
2,872,751	-		PGA1_c27580	0.23	-3.2
2,872,761	-		PGA1_c27580	0.25	-0.0
2,872,761	-		PGA1_c27580	0.25	+0.0
2,872,798	+		PGA1_c27580	0.30	-0.9
2,872,806	-		PGA1_c27580	0.31	+0.4
2,872,809	-		PGA1_c27580	0.31	-2.5
2,872,834	+		PGA1_c27580	0.35	+0.1
2,872,849	+		PGA1_c27580	0.37	-1.4
2,872,849	+		PGA1_c27580	0.37	-1.1
2,872,856	-		PGA1_c27580	0.38	-0.9
2,872,874	-		PGA1_c27580	0.40	-1.2
2,872,874	-		PGA1_c27580	0.40	+0.3
2,872,884	-		PGA1_c27580	0.42	+0.9
2,872,884	-		PGA1_c27580	0.42	-2.7
2,872,917	+		PGA1_c27580	0.46	-1.4
2,872,925	-		PGA1_c27580	0.47	-0.2
2,872,925	-		PGA1_c27580	0.47	-1.3
2,872,951	+		PGA1_c27580	0.51	+0.9
2,873,009	+		PGA1_c27580	0.59	-0.2
2,873,017	-		PGA1_c27580	0.60	+0.5
2,873,017	-		PGA1_c27580	0.60	-0.6