Experiment: m.b. acetate 175 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_349 and HP15_350 are separated by 146 nucleotides HP15_350 and HP15_351 are separated by 3 nucleotides HP15_351 and HP15_352 are separated by 25 nucleotides
HP15_349: HP15_349 - phosphomethylpyrimidine kinase, at 343,998 to 344,651
_349
HP15_350: HP15_350 - conserved hypothetical protein CHP00701, at 344,798 to 345,220
_350
HP15_351: HP15_351 - Cl-channel, voltage-gated family protein, at 345,224 to 346,999
_351
HP15_352: HP15_352 - N-acetyl-gamma-glutamyl-phosphate reductase, at 347,025 to 348,191
_352
Position (kb) 345
346
347 Strain fitness (log2 ratio) -2
-1
0
1 at 345.361 kb on + strand at 345.367 kb on + strand at 345.404 kb on + strand, within HP15_351 at 345.512 kb on - strand, within HP15_351 at 345.580 kb on - strand, within HP15_351 at 345.751 kb on + strand, within HP15_351 at 345.751 kb on - strand, within HP15_351 at 345.759 kb on - strand, within HP15_351 at 345.809 kb on - strand, within HP15_351 at 345.847 kb on + strand, within HP15_351 at 345.865 kb on + strand, within HP15_351 at 345.975 kb on + strand, within HP15_351 at 346.030 kb on + strand, within HP15_351 at 346.105 kb on - strand, within HP15_351 at 346.214 kb on - strand, within HP15_351 at 346.219 kb on + strand, within HP15_351 at 346.375 kb on - strand, within HP15_351 at 346.531 kb on + strand, within HP15_351 at 346.738 kb on + strand, within HP15_351 at 347.110 kb on + strand at 347.204 kb on + strand, within HP15_352 at 347.391 kb on + strand, within HP15_352 at 347.507 kb on - strand, within HP15_352 at 347.924 kb on + strand, within HP15_352 at 347.992 kb on + strand, within HP15_352
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 175 mM remove 345,361 + -1.1 345,367 + -1.6 345,404 + HP15_351 0.10 -0.2 345,512 - HP15_351 0.16 -0.0 345,580 - HP15_351 0.20 -2.5 345,751 + HP15_351 0.30 -1.3 345,751 - HP15_351 0.30 -1.0 345,759 - HP15_351 0.30 -0.1 345,809 - HP15_351 0.33 -0.2 345,847 + HP15_351 0.35 -0.4 345,865 + HP15_351 0.36 -2.2 345,975 + HP15_351 0.42 +0.0 346,030 + HP15_351 0.45 -1.1 346,105 - HP15_351 0.50 -0.9 346,214 - HP15_351 0.56 -1.0 346,219 + HP15_351 0.56 -1.5 346,375 - HP15_351 0.65 -0.7 346,531 + HP15_351 0.74 -0.5 346,738 + HP15_351 0.85 -1.3 347,110 + -0.5 347,204 + HP15_352 0.15 -1.3 347,391 + HP15_352 0.31 +0.3 347,507 - HP15_352 0.41 -0.5 347,924 + HP15_352 0.77 +0.0 347,992 + HP15_352 0.83 -0.9
Or see this region's nucleotide sequence