Strain Fitness in Marinobacter adhaerens HP15 around HP15_3442

Experiment: m.b. acetate 175 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3440 and HP15_3441 are separated by 322 nucleotidesHP15_3441 and HP15_3442 are separated by 82 nucleotidesHP15_3442 and HP15_3443 are separated by 23 nucleotidesHP15_3443 and HP15_3444 are separated by 95 nucleotides HP15_3440: HP15_3440 - integral membrane protein, at 3,619,262 to 3,620,710 _3440 HP15_3441: HP15_3441 - OmpA/MotB domain protein, at 3,621,033 to 3,621,473 _3441 HP15_3442: HP15_3442 - conserved hypothetical protein, membrane, at 3,621,556 to 3,621,936 _3442 HP15_3443: HP15_3443 - transglycosylase-associated-like protein, at 3,621,960 to 3,622,202 _3443 HP15_3444: HP15_3444 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 3,622,298 to 3,622,996 _3444 Position (kb) 3621 3622Strain fitness (log2 ratio) -1 0 1at 3620.570 kb on - strandat 3620.572 kb on + strandat 3620.572 kb on + strandat 3620.653 kb on + strandat 3620.653 kb on + strandat 3620.655 kb on - strandat 3620.655 kb on - strandat 3620.655 kb on - strandat 3620.665 kb on - strandat 3620.795 kb on - strandat 3620.927 kb on + strandat 3620.976 kb on + strandat 3621.063 kb on - strandat 3621.389 kb on + strand, within HP15_3441at 3621.395 kb on + strand, within HP15_3441at 3621.510 kb on + strandat 3621.627 kb on - strand, within HP15_3442at 3621.682 kb on + strand, within HP15_3442at 3621.746 kb on + strand, within HP15_3442at 3621.754 kb on - strand, within HP15_3442at 3621.766 kb on - strand, within HP15_3442at 3621.799 kb on - strand, within HP15_3442at 3621.819 kb on - strand, within HP15_3442at 3621.819 kb on - strand, within HP15_3442at 3622.222 kb on - strandat 3622.280 kb on + strandat 3622.280 kb on - strandat 3622.280 kb on - strandat 3622.280 kb on - strandat 3622.366 kb on - strandat 3622.388 kb on - strand, within HP15_3444at 3622.423 kb on + strand, within HP15_3444at 3622.574 kb on - strand, within HP15_3444at 3622.575 kb on - strand, within HP15_3444at 3622.631 kb on + strand, within HP15_3444at 3622.679 kb on - strand, within HP15_3444at 3622.689 kb on - strand, within HP15_3444at 3622.703 kb on - strand, within HP15_3444at 3622.826 kb on + strand, within HP15_3444at 3622.836 kb on - strand, within HP15_3444

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. acetate 175 mM
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3,620,570 - -0.4
3,620,572 + -1.0
3,620,572 + +0.8
3,620,653 + +0.2
3,620,653 + -0.4
3,620,655 - +0.6
3,620,655 - +0.3
3,620,655 - +0.6
3,620,665 - -0.3
3,620,795 - +0.8
3,620,927 + +0.2
3,620,976 + +1.5
3,621,063 - -0.3
3,621,389 + HP15_3441 0.81 -0.4
3,621,395 + HP15_3441 0.82 -0.1
3,621,510 + -0.2
3,621,627 - HP15_3442 0.19 -0.4
3,621,682 + HP15_3442 0.33 -0.4
3,621,746 + HP15_3442 0.50 -0.1
3,621,754 - HP15_3442 0.52 -0.2
3,621,766 - HP15_3442 0.55 -0.6
3,621,799 - HP15_3442 0.64 +0.2
3,621,819 - HP15_3442 0.69 -1.3
3,621,819 - HP15_3442 0.69 -0.3
3,622,222 - -0.3
3,622,280 + +0.1
3,622,280 - +0.6
3,622,280 - +1.5
3,622,280 - -0.2
3,622,366 - -1.0
3,622,388 - HP15_3444 0.13 +0.8
3,622,423 + HP15_3444 0.18 +0.0
3,622,574 - HP15_3444 0.39 -0.2
3,622,575 - HP15_3444 0.40 -1.2
3,622,631 + HP15_3444 0.48 -0.5
3,622,679 - HP15_3444 0.55 +0.3
3,622,689 - HP15_3444 0.56 -0.2
3,622,703 - HP15_3444 0.58 -0.3
3,622,826 + HP15_3444 0.76 +1.6
3,622,836 - HP15_3444 0.77 +0.3

Or see this region's nucleotide sequence