Strain Fitness in Marinobacter adhaerens HP15 around HP15_1510

Experiment: m.b. acetate 175 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1508 and HP15_1509 are separated by 185 nucleotidesHP15_1509 and HP15_1510 are separated by 61 nucleotidesHP15_1510 and HP15_1511 are separated by 152 nucleotides HP15_1508: HP15_1508 - ABC transporter ATPase component, at 1,583,940 to 1,585,850 _1508 HP15_1509: HP15_1509 - conserved hypothetical protein, at 1,586,036 to 1,586,515 _1509 HP15_1510: HP15_1510 - UspA domain protein, at 1,586,577 to 1,587,008 _1510 HP15_1511: HP15_1511 - conserved hypothetical protein, secreted, at 1,587,161 to 1,587,979 _1511 Position (kb) 1586 1587 1588Strain fitness (log2 ratio) -1 0 1at 1585.621 kb on - strand, within HP15_1508at 1585.633 kb on + strand, within HP15_1508at 1585.689 kb on - strandat 1585.795 kb on + strandat 1585.889 kb on - strandat 1586.183 kb on - strand, within HP15_1509at 1586.226 kb on - strand, within HP15_1509at 1586.297 kb on + strand, within HP15_1509at 1586.333 kb on - strand, within HP15_1509at 1586.333 kb on - strand, within HP15_1509at 1586.337 kb on - strand, within HP15_1509at 1586.346 kb on + strand, within HP15_1509at 1586.380 kb on + strand, within HP15_1509at 1586.398 kb on - strand, within HP15_1509at 1586.619 kb on - strandat 1586.716 kb on - strand, within HP15_1510at 1586.870 kb on - strand, within HP15_1510at 1586.906 kb on + strand, within HP15_1510at 1587.181 kb on + strandat 1587.259 kb on + strand, within HP15_1511at 1587.435 kb on - strand, within HP15_1511at 1587.441 kb on + strand, within HP15_1511at 1587.444 kb on - strand, within HP15_1511at 1587.543 kb on + strand, within HP15_1511at 1587.561 kb on - strand, within HP15_1511at 1587.647 kb on - strand, within HP15_1511at 1587.783 kb on - strand, within HP15_1511at 1587.792 kb on + strand, within HP15_1511at 1587.838 kb on - strand, within HP15_1511at 1587.838 kb on - strand, within HP15_1511at 1587.893 kb on + strand, within HP15_1511at 1587.893 kb on + strand, within HP15_1511

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. acetate 175 mM
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1,585,621 - HP15_1508 0.88 -1.0
1,585,633 + HP15_1508 0.89 +0.4
1,585,689 - +0.1
1,585,795 + +0.3
1,585,889 - -0.1
1,586,183 - HP15_1509 0.31 +0.0
1,586,226 - HP15_1509 0.40 +1.1
1,586,297 + HP15_1509 0.54 +0.7
1,586,333 - HP15_1509 0.62 -0.3
1,586,333 - HP15_1509 0.62 -0.1
1,586,337 - HP15_1509 0.63 +0.5
1,586,346 + HP15_1509 0.65 +0.0
1,586,380 + HP15_1509 0.72 +1.0
1,586,398 - HP15_1509 0.75 +0.1
1,586,619 - +0.4
1,586,716 - HP15_1510 0.32 -1.3
1,586,870 - HP15_1510 0.68 +0.9
1,586,906 + HP15_1510 0.76 -0.6
1,587,181 + -0.2
1,587,259 + HP15_1511 0.12 -0.2
1,587,435 - HP15_1511 0.33 +0.1
1,587,441 + HP15_1511 0.34 +0.4
1,587,444 - HP15_1511 0.35 +0.3
1,587,543 + HP15_1511 0.47 +0.6
1,587,561 - HP15_1511 0.49 -0.2
1,587,647 - HP15_1511 0.59 -0.2
1,587,783 - HP15_1511 0.76 +0.8
1,587,792 + HP15_1511 0.77 +0.5
1,587,838 - HP15_1511 0.83 +0.4
1,587,838 - HP15_1511 0.83 +0.7
1,587,893 + HP15_1511 0.89 -0.0
1,587,893 + HP15_1511 0.89 +0.4

Or see this region's nucleotide sequence