Strain Fitness in Shewanella amazonensis SB2B around Sama_1306

Experiment: Chlorite 0.078125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_1304 and Sama_1305 are separated by 62 nucleotidesSama_1305 and Sama_1306 overlap by 4 nucleotidesSama_1306 and Sama_1307 are separated by 104 nucleotidesSama_1307 and Sama_1308 are separated by 89 nucleotidesSama_1308 and Sama_1309 are separated by 164 nucleotides Sama_1304: Sama_1304 - component of chlorite stress sensing system with DUF692 (from data), at 1,588,539 to 1,588,982 _1304 Sama_1305: Sama_1305 - component of chlorite stress sensing system with Sama_1304 (from data), at 1,589,045 to 1,589,881 _1305 Sama_1306: Sama_1306 - hypothetical protein (RefSeq), at 1,589,878 to 1,590,636 _1306 Sama_1307: Sama_1307 - hypothetical protein (RefSeq), at 1,590,741 to 1,590,860 _1307 Sama_1308: Sama_1308 - hypothetical protein (RefSeq), at 1,590,950 to 1,591,321 _1308 Sama_1309: Sama_1309 - adenine phosphoribosyltransferase (RefSeq), at 1,591,486 to 1,592,031 _1309 Position (kb) 1589 1590 1591Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1588.919 kb on + strand, within Sama_1304at 1588.919 kb on + strand, within Sama_1304at 1588.919 kb on + strand, within Sama_1304at 1588.919 kb on + strand, within Sama_1304at 1589.023 kb on - strandat 1589.052 kb on + strandat 1589.053 kb on - strandat 1589.170 kb on + strand, within Sama_1305at 1589.170 kb on + strand, within Sama_1305at 1589.171 kb on - strand, within Sama_1305at 1589.175 kb on - strand, within Sama_1305at 1589.272 kb on + strand, within Sama_1305at 1589.284 kb on + strand, within Sama_1305at 1589.285 kb on - strand, within Sama_1305at 1589.310 kb on - strand, within Sama_1305at 1589.311 kb on - strand, within Sama_1305at 1589.311 kb on - strand, within Sama_1305at 1589.316 kb on + strand, within Sama_1305at 1589.316 kb on + strand, within Sama_1305at 1589.316 kb on + strand, within Sama_1305at 1589.317 kb on - strand, within Sama_1305at 1589.317 kb on - strand, within Sama_1305at 1589.317 kb on - strand, within Sama_1305at 1589.318 kb on + strand, within Sama_1305at 1589.318 kb on + strand, within Sama_1305at 1589.319 kb on - strand, within Sama_1305at 1589.319 kb on - strand, within Sama_1305at 1589.336 kb on + strand, within Sama_1305at 1589.336 kb on + strand, within Sama_1305at 1589.337 kb on - strand, within Sama_1305at 1589.337 kb on - strand, within Sama_1305at 1589.367 kb on + strand, within Sama_1305at 1589.404 kb on + strand, within Sama_1305at 1589.547 kb on + strand, within Sama_1305at 1589.547 kb on + strand, within Sama_1305at 1589.547 kb on + strand, within Sama_1305at 1589.547 kb on + strand, within Sama_1305at 1589.548 kb on - strand, within Sama_1305at 1589.548 kb on - strand, within Sama_1305at 1589.570 kb on + strand, within Sama_1305at 1589.570 kb on + strand, within Sama_1305at 1589.570 kb on + strand, within Sama_1305at 1589.570 kb on + strand, within Sama_1305at 1589.571 kb on - strand, within Sama_1305at 1589.571 kb on - strand, within Sama_1305at 1589.594 kb on + strand, within Sama_1305at 1589.594 kb on + strand, within Sama_1305at 1589.594 kb on + strand, within Sama_1305at 1589.594 kb on + strand, within Sama_1305at 1589.594 kb on + strand, within Sama_1305at 1589.609 kb on + strand, within Sama_1305at 1589.609 kb on + strand, within Sama_1305at 1589.609 kb on + strand, within Sama_1305at 1589.610 kb on - strand, within Sama_1305at 1589.635 kb on + strand, within Sama_1305at 1589.637 kb on + strand, within Sama_1305at 1589.637 kb on + strand, within Sama_1305at 1589.637 kb on + strand, within Sama_1305at 1589.637 kb on + strand, within Sama_1305at 1589.638 kb on - strand, within Sama_1305at 1589.638 kb on - strand, within Sama_1305at 1589.638 kb on - strand, within Sama_1305at 1589.638 kb on - strand, within Sama_1305at 1589.642 kb on + strand, within Sama_1305at 1589.643 kb on - strand, within Sama_1305at 1589.663 kb on + strand, within Sama_1305at 1589.686 kb on - strand, within Sama_1305at 1589.688 kb on + strand, within Sama_1305at 1589.688 kb on + strand, within Sama_1305at 1589.688 kb on + strand, within Sama_1305at 1589.688 kb on + strand, within Sama_1305at 1589.688 kb on + strand, within Sama_1305at 1589.688 kb on + strand, within Sama_1305at 1589.688 kb on + strand, within Sama_1305at 1589.688 kb on + strand, within Sama_1305at 1589.688 kb on + strand, within Sama_1305at 1589.688 kb on + strand, within Sama_1305at 1589.688 kb on + strand, within Sama_1305at 1589.688 kb on + strand, within Sama_1305at 1589.688 kb on + strand, within Sama_1305at 1589.688 kb on + strand, within Sama_1305at 1589.688 kb on + strand, within Sama_1305at 1589.688 kb on + strand, within Sama_1305at 1589.689 kb on - strand, within Sama_1305at 1589.689 kb on - strand, within Sama_1305at 1589.689 kb on - strand, within Sama_1305at 1589.689 kb on - strand, within Sama_1305at 1589.689 kb on - strand, within Sama_1305at 1589.692 kb on + strand, within Sama_1305at 1589.709 kb on + strand, within Sama_1305at 1589.709 kb on + strand, within Sama_1305at 1589.709 kb on + strand, within Sama_1305at 1589.709 kb on + strand, within Sama_1305at 1589.710 kb on - strand, within Sama_1305at 1589.710 kb on - strand, within Sama_1305at 1589.710 kb on - strand, within Sama_1305at 1589.745 kb on - strand, within Sama_1305at 1589.745 kb on - strand, within Sama_1305at 1589.763 kb on + strand, within Sama_1305at 1589.763 kb on + strand, within Sama_1305at 1589.763 kb on + strand, within Sama_1305at 1589.764 kb on - strand, within Sama_1305at 1589.767 kb on + strand, within Sama_1305at 1589.767 kb on + strand, within Sama_1305at 1589.767 kb on + strand, within Sama_1305at 1589.768 kb on - strand, within Sama_1305at 1589.768 kb on - strand, within Sama_1305at 1589.768 kb on - strand, within Sama_1305at 1589.768 kb on - strand, within Sama_1305at 1589.768 kb on - strand, within Sama_1305at 1589.768 kb on - strand, within Sama_1305at 1589.840 kb on + strandat 1589.934 kb on - strandat 1589.934 kb on - strandat 1589.934 kb on - strandat 1590.044 kb on - strand, within Sama_1306at 1590.071 kb on + strand, within Sama_1306at 1590.115 kb on - strand, within Sama_1306at 1590.115 kb on - strand, within Sama_1306at 1590.146 kb on + strand, within Sama_1306at 1590.219 kb on - strand, within Sama_1306at 1590.289 kb on + strand, within Sama_1306at 1590.289 kb on + strand, within Sama_1306at 1590.290 kb on - strand, within Sama_1306at 1590.290 kb on - strand, within Sama_1306at 1590.338 kb on - strand, within Sama_1306at 1590.415 kb on + strand, within Sama_1306at 1590.453 kb on + strand, within Sama_1306at 1590.496 kb on - strand, within Sama_1306at 1590.508 kb on + strand, within Sama_1306at 1590.508 kb on + strand, within Sama_1306at 1590.509 kb on - strand, within Sama_1306at 1590.509 kb on - strand, within Sama_1306at 1590.509 kb on - strand, within Sama_1306at 1590.518 kb on + strand, within Sama_1306at 1590.518 kb on + strand, within Sama_1306at 1590.614 kb on + strandat 1590.615 kb on - strandat 1590.617 kb on + strandat 1590.617 kb on + strandat 1590.617 kb on + strandat 1590.618 kb on - strandat 1590.646 kb on + strandat 1590.646 kb on + strandat 1590.646 kb on + strandat 1590.647 kb on - strandat 1590.647 kb on - strandat 1590.647 kb on - strandat 1590.647 kb on - strandat 1590.657 kb on - strandat 1590.777 kb on + strand, within Sama_1307at 1590.778 kb on - strand, within Sama_1307at 1590.853 kb on + strandat 1590.853 kb on + strandat 1590.858 kb on + strandat 1590.875 kb on + strandat 1590.875 kb on + strandat 1590.877 kb on + strandat 1590.877 kb on + strandat 1590.877 kb on + strandat 1590.877 kb on + strandat 1590.877 kb on + strandat 1590.877 kb on + strandat 1590.878 kb on - strandat 1590.955 kb on - strandat 1590.987 kb on + strandat 1590.987 kb on + strandat 1590.987 kb on + strandat 1591.005 kb on + strand, within Sama_1308at 1591.005 kb on + strand, within Sama_1308at 1591.006 kb on - strand, within Sama_1308at 1591.020 kb on + strand, within Sama_1308at 1591.135 kb on + strand, within Sama_1308at 1591.135 kb on + strand, within Sama_1308at 1591.135 kb on + strand, within Sama_1308at 1591.263 kb on + strand, within Sama_1308at 1591.313 kb on - strandat 1591.313 kb on - strandat 1591.313 kb on - strandat 1591.313 kb on - strandat 1591.392 kb on + strandat 1591.392 kb on + strandat 1591.399 kb on + strandat 1591.471 kb on + strandat 1591.471 kb on + strandat 1591.471 kb on + strandat 1591.485 kb on + strandat 1591.497 kb on + strandat 1591.497 kb on + strandat 1591.497 kb on + strandat 1591.509 kb on + strandat 1591.510 kb on - strandat 1591.524 kb on + strandat 1591.525 kb on - strandat 1591.525 kb on - strandat 1591.525 kb on - strandat 1591.557 kb on + strand, within Sama_1309at 1591.557 kb on + strand, within Sama_1309at 1591.557 kb on + strand, within Sama_1309at 1591.557 kb on + strand, within Sama_1309at 1591.557 kb on + strand, within Sama_1309at 1591.558 kb on - strand, within Sama_1309at 1591.558 kb on - strand, within Sama_1309at 1591.558 kb on - strand, within Sama_1309at 1591.558 kb on - strand, within Sama_1309at 1591.558 kb on - strand, within Sama_1309at 1591.601 kb on - strand, within Sama_1309at 1591.611 kb on + strand, within Sama_1309at 1591.612 kb on - strand, within Sama_1309at 1591.612 kb on - strand, within Sama_1309at 1591.634 kb on - strand, within Sama_1309

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.078125 mM
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1,588,919 + Sama_1304 0.86 +0.2
1,588,919 + Sama_1304 0.86 -1.6
1,588,919 + Sama_1304 0.86 -2.3
1,588,919 + Sama_1304 0.86 -0.7
1,589,023 - -0.6
1,589,052 + -0.3
1,589,053 - -0.6
1,589,170 + Sama_1305 0.15 -0.8
1,589,170 + Sama_1305 0.15 -0.8
1,589,171 - Sama_1305 0.15 +0.6
1,589,175 - Sama_1305 0.16 +0.2
1,589,272 + Sama_1305 0.27 +0.8
1,589,284 + Sama_1305 0.29 +0.4
1,589,285 - Sama_1305 0.29 -1.5
1,589,310 - Sama_1305 0.32 +0.2
1,589,311 - Sama_1305 0.32 -1.3
1,589,311 - Sama_1305 0.32 +0.1
1,589,316 + Sama_1305 0.32 -1.4
1,589,316 + Sama_1305 0.32 -0.3
1,589,316 + Sama_1305 0.32 -0.4
1,589,317 - Sama_1305 0.32 -0.8
1,589,317 - Sama_1305 0.32 -1.5
1,589,317 - Sama_1305 0.32 -1.2
1,589,318 + Sama_1305 0.33 -1.6
1,589,318 + Sama_1305 0.33 -1.5
1,589,319 - Sama_1305 0.33 -0.6
1,589,319 - Sama_1305 0.33 -1.4
1,589,336 + Sama_1305 0.35 -0.5
1,589,336 + Sama_1305 0.35 -0.1
1,589,337 - Sama_1305 0.35 -1.9
1,589,337 - Sama_1305 0.35 -0.3
1,589,367 + Sama_1305 0.38 -1.2
1,589,404 + Sama_1305 0.43 +0.1
1,589,547 + Sama_1305 0.60 -1.1
1,589,547 + Sama_1305 0.60 -3.0
1,589,547 + Sama_1305 0.60 +1.0
1,589,547 + Sama_1305 0.60 -1.8
1,589,548 - Sama_1305 0.60 +0.0
1,589,548 - Sama_1305 0.60 +1.2
1,589,570 + Sama_1305 0.63 +0.0
1,589,570 + Sama_1305 0.63 -0.8
1,589,570 + Sama_1305 0.63 -1.0
1,589,570 + Sama_1305 0.63 -0.8
1,589,571 - Sama_1305 0.63 -0.5
1,589,571 - Sama_1305 0.63 +1.1
1,589,594 + Sama_1305 0.66 -1.5
1,589,594 + Sama_1305 0.66 -0.8
1,589,594 + Sama_1305 0.66 +1.8
1,589,594 + Sama_1305 0.66 -1.1
1,589,594 + Sama_1305 0.66 -0.8
1,589,609 + Sama_1305 0.67 -0.1
1,589,609 + Sama_1305 0.67 -2.1
1,589,609 + Sama_1305 0.67 -2.0
1,589,610 - Sama_1305 0.68 -1.2
1,589,635 + Sama_1305 0.70 -0.4
1,589,637 + Sama_1305 0.71 -0.4
1,589,637 + Sama_1305 0.71 +0.4
1,589,637 + Sama_1305 0.71 -1.1
1,589,637 + Sama_1305 0.71 -1.2
1,589,638 - Sama_1305 0.71 -0.7
1,589,638 - Sama_1305 0.71 -0.2
1,589,638 - Sama_1305 0.71 +0.9
1,589,638 - Sama_1305 0.71 -0.8
1,589,642 + Sama_1305 0.71 -1.1
1,589,643 - Sama_1305 0.71 -0.3
1,589,663 + Sama_1305 0.74 +0.0
1,589,686 - Sama_1305 0.77 +0.2
1,589,688 + Sama_1305 0.77 +0.2
1,589,688 + Sama_1305 0.77 -0.9
1,589,688 + Sama_1305 0.77 +0.2
1,589,688 + Sama_1305 0.77 -0.3
1,589,688 + Sama_1305 0.77 -1.2
1,589,688 + Sama_1305 0.77 -2.3
1,589,688 + Sama_1305 0.77 -1.6
1,589,688 + Sama_1305 0.77 +1.8
1,589,688 + Sama_1305 0.77 +0.6
1,589,688 + Sama_1305 0.77 +0.0
1,589,688 + Sama_1305 0.77 -0.9
1,589,688 + Sama_1305 0.77 +0.8
1,589,688 + Sama_1305 0.77 +0.4
1,589,688 + Sama_1305 0.77 +0.6
1,589,688 + Sama_1305 0.77 -0.2
1,589,688 + Sama_1305 0.77 -1.0
1,589,689 - Sama_1305 0.77 -1.0
1,589,689 - Sama_1305 0.77 -0.5
1,589,689 - Sama_1305 0.77 -1.1
1,589,689 - Sama_1305 0.77 -1.0
1,589,689 - Sama_1305 0.77 -1.2
1,589,692 + Sama_1305 0.77 -2.2
1,589,709 + Sama_1305 0.79 +1.8
1,589,709 + Sama_1305 0.79 -0.6
1,589,709 + Sama_1305 0.79 -0.5
1,589,709 + Sama_1305 0.79 -0.9
1,589,710 - Sama_1305 0.79 +0.0
1,589,710 - Sama_1305 0.79 -1.5
1,589,710 - Sama_1305 0.79 -1.7
1,589,745 - Sama_1305 0.84 -0.5
1,589,745 - Sama_1305 0.84 -0.2
1,589,763 + Sama_1305 0.86 +1.4
1,589,763 + Sama_1305 0.86 -1.6
1,589,763 + Sama_1305 0.86 -0.5
1,589,764 - Sama_1305 0.86 -0.0
1,589,767 + Sama_1305 0.86 -1.0
1,589,767 + Sama_1305 0.86 -1.1
1,589,767 + Sama_1305 0.86 +0.8
1,589,768 - Sama_1305 0.86 -1.8
1,589,768 - Sama_1305 0.86 -1.0
1,589,768 - Sama_1305 0.86 -1.8
1,589,768 - Sama_1305 0.86 +0.2
1,589,768 - Sama_1305 0.86 -0.0
1,589,768 - Sama_1305 0.86 -1.2
1,589,840 + +1.1
1,589,934 - +0.0
1,589,934 - +0.2
1,589,934 - +1.2
1,590,044 - Sama_1306 0.22 -0.5
1,590,071 + Sama_1306 0.25 -0.7
1,590,115 - Sama_1306 0.31 +1.2
1,590,115 - Sama_1306 0.31 +0.3
1,590,146 + Sama_1306 0.35 +1.0
1,590,219 - Sama_1306 0.45 -0.2
1,590,289 + Sama_1306 0.54 -0.8
1,590,289 + Sama_1306 0.54 -1.0
1,590,290 - Sama_1306 0.54 -0.9
1,590,290 - Sama_1306 0.54 -0.8
1,590,338 - Sama_1306 0.61 -2.9
1,590,415 + Sama_1306 0.71 +1.8
1,590,453 + Sama_1306 0.76 -1.0
1,590,496 - Sama_1306 0.81 -1.0
1,590,508 + Sama_1306 0.83 -0.4
1,590,508 + Sama_1306 0.83 -0.5
1,590,509 - Sama_1306 0.83 +0.8
1,590,509 - Sama_1306 0.83 +1.2
1,590,509 - Sama_1306 0.83 -1.4
1,590,518 + Sama_1306 0.84 -2.4
1,590,518 + Sama_1306 0.84 -0.5
1,590,614 + +0.5
1,590,615 - +0.2
1,590,617 + -0.3
1,590,617 + -0.5
1,590,617 + -0.2
1,590,618 - -1.5
1,590,646 + -0.5
1,590,646 + +0.6
1,590,646 + -0.2
1,590,647 - +0.5
1,590,647 - -0.2
1,590,647 - -0.2
1,590,647 - -0.9
1,590,657 - +0.1
1,590,777 + Sama_1307 0.30 -0.5
1,590,778 - Sama_1307 0.31 -0.2
1,590,853 + -1.2
1,590,853 + +0.2
1,590,858 + +0.2
1,590,875 + -0.8
1,590,875 + -0.4
1,590,877 + -1.1
1,590,877 + +0.8
1,590,877 + -0.2
1,590,877 + -1.0
1,590,877 + -0.2
1,590,877 + -0.5
1,590,878 - -1.2
1,590,955 - -0.2
1,590,987 + -0.3
1,590,987 + +0.1
1,590,987 + +0.5
1,591,005 + Sama_1308 0.15 +0.7
1,591,005 + Sama_1308 0.15 +0.6
1,591,006 - Sama_1308 0.15 +0.6
1,591,020 + Sama_1308 0.19 +0.2
1,591,135 + Sama_1308 0.50 -0.1
1,591,135 + Sama_1308 0.50 +0.2
1,591,135 + Sama_1308 0.50 +0.4
1,591,263 + Sama_1308 0.84 +0.6
1,591,313 - -0.4
1,591,313 - -0.3
1,591,313 - -0.7
1,591,313 - +0.4
1,591,392 + -1.0
1,591,392 + +0.2
1,591,399 + -0.8
1,591,471 + -1.9
1,591,471 + -0.9
1,591,471 + +0.2
1,591,485 + -0.6
1,591,497 + -0.4
1,591,497 + -0.7
1,591,497 + +1.8
1,591,509 + -0.3
1,591,510 - +1.1
1,591,524 + +0.0
1,591,525 - +1.3
1,591,525 - +0.2
1,591,525 - +1.5
1,591,557 + Sama_1309 0.13 -0.5
1,591,557 + Sama_1309 0.13 -0.2
1,591,557 + Sama_1309 0.13 -0.4
1,591,557 + Sama_1309 0.13 -1.1
1,591,557 + Sama_1309 0.13 -0.5
1,591,558 - Sama_1309 0.13 -0.0
1,591,558 - Sama_1309 0.13 -1.0
1,591,558 - Sama_1309 0.13 -0.1
1,591,558 - Sama_1309 0.13 -0.2
1,591,558 - Sama_1309 0.13 +0.1
1,591,601 - Sama_1309 0.21 -0.3
1,591,611 + Sama_1309 0.23 -1.2
1,591,612 - Sama_1309 0.23 +0.2
1,591,612 - Sama_1309 0.23 -0.4
1,591,634 - Sama_1309 0.27 -0.1

Or see this region's nucleotide sequence