Experiment: Chlorite 0.078125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_1304 and Sama_1305 are separated by 62 nucleotides Sama_1305 and Sama_1306 overlap by 4 nucleotides Sama_1306 and Sama_1307 are separated by 104 nucleotides Sama_1307 and Sama_1308 are separated by 89 nucleotides Sama_1308 and Sama_1309 are separated by 164 nucleotides
Sama_1304: Sama_1304 - component of chlorite stress sensing system with DUF692 (from data) , at 1,588,539 to 1,588,982
_1304
Sama_1305: Sama_1305 - component of chlorite stress sensing system with Sama_1304 (from data) , at 1,589,045 to 1,589,881
_1305
Sama_1306: Sama_1306 - hypothetical protein (RefSeq), at 1,589,878 to 1,590,636
_1306
Sama_1307: Sama_1307 - hypothetical protein (RefSeq), at 1,590,741 to 1,590,860
_1307
Sama_1308: Sama_1308 - hypothetical protein (RefSeq), at 1,590,950 to 1,591,321
_1308
Sama_1309: Sama_1309 - adenine phosphoribosyltransferase (RefSeq), at 1,591,486 to 1,592,031
_1309
Position (kb)
1589
1590
1591 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1588.919 kb on + strand, within Sama_1304 at 1588.919 kb on + strand, within Sama_1304 at 1588.919 kb on + strand, within Sama_1304 at 1588.919 kb on + strand, within Sama_1304 at 1589.023 kb on - strand at 1589.052 kb on + strand at 1589.053 kb on - strand at 1589.170 kb on + strand, within Sama_1305 at 1589.170 kb on + strand, within Sama_1305 at 1589.171 kb on - strand, within Sama_1305 at 1589.175 kb on - strand, within Sama_1305 at 1589.272 kb on + strand, within Sama_1305 at 1589.284 kb on + strand, within Sama_1305 at 1589.285 kb on - strand, within Sama_1305 at 1589.310 kb on - strand, within Sama_1305 at 1589.311 kb on - strand, within Sama_1305 at 1589.311 kb on - strand, within Sama_1305 at 1589.316 kb on + strand, within Sama_1305 at 1589.316 kb on + strand, within Sama_1305 at 1589.316 kb on + strand, within Sama_1305 at 1589.317 kb on - strand, within Sama_1305 at 1589.317 kb on - strand, within Sama_1305 at 1589.317 kb on - strand, within Sama_1305 at 1589.318 kb on + strand, within Sama_1305 at 1589.318 kb on + strand, within Sama_1305 at 1589.319 kb on - strand, within Sama_1305 at 1589.319 kb on - strand, within Sama_1305 at 1589.336 kb on + strand, within Sama_1305 at 1589.336 kb on + strand, within Sama_1305 at 1589.337 kb on - strand, within Sama_1305 at 1589.337 kb on - strand, within Sama_1305 at 1589.367 kb on + strand, within Sama_1305 at 1589.404 kb on + strand, within Sama_1305 at 1589.547 kb on + strand, within Sama_1305 at 1589.547 kb on + strand, within Sama_1305 at 1589.547 kb on + strand, within Sama_1305 at 1589.547 kb on + strand, within Sama_1305 at 1589.548 kb on - strand, within Sama_1305 at 1589.548 kb on - strand, within Sama_1305 at 1589.570 kb on + strand, within Sama_1305 at 1589.570 kb on + strand, within Sama_1305 at 1589.570 kb on + strand, within Sama_1305 at 1589.570 kb on + strand, within Sama_1305 at 1589.571 kb on - strand, within Sama_1305 at 1589.571 kb on - strand, within Sama_1305 at 1589.594 kb on + strand, within Sama_1305 at 1589.594 kb on + strand, within Sama_1305 at 1589.594 kb on + strand, within Sama_1305 at 1589.594 kb on + strand, within Sama_1305 at 1589.594 kb on + strand, within Sama_1305 at 1589.609 kb on + strand, within Sama_1305 at 1589.609 kb on + strand, within Sama_1305 at 1589.609 kb on + strand, within Sama_1305 at 1589.610 kb on - strand, within Sama_1305 at 1589.635 kb on + strand, within Sama_1305 at 1589.637 kb on + strand, within Sama_1305 at 1589.637 kb on + strand, within Sama_1305 at 1589.637 kb on + strand, within Sama_1305 at 1589.637 kb on + strand, within Sama_1305 at 1589.638 kb on - strand, within Sama_1305 at 1589.638 kb on - strand, within Sama_1305 at 1589.638 kb on - strand, within Sama_1305 at 1589.638 kb on - strand, within Sama_1305 at 1589.642 kb on + strand, within Sama_1305 at 1589.643 kb on - strand, within Sama_1305 at 1589.663 kb on + strand, within Sama_1305 at 1589.686 kb on - strand, within Sama_1305 at 1589.688 kb on + strand, within Sama_1305 at 1589.688 kb on + strand, within Sama_1305 at 1589.688 kb on + strand, within Sama_1305 at 1589.688 kb on + strand, within Sama_1305 at 1589.688 kb on + strand, within Sama_1305 at 1589.688 kb on + strand, within Sama_1305 at 1589.688 kb on + strand, within Sama_1305 at 1589.688 kb on + strand, within Sama_1305 at 1589.688 kb on + strand, within Sama_1305 at 1589.688 kb on + strand, within Sama_1305 at 1589.688 kb on + strand, within Sama_1305 at 1589.688 kb on + strand, within Sama_1305 at 1589.688 kb on + strand, within Sama_1305 at 1589.688 kb on + strand, within Sama_1305 at 1589.688 kb on + strand, within Sama_1305 at 1589.688 kb on + strand, within Sama_1305 at 1589.689 kb on - strand, within Sama_1305 at 1589.689 kb on - strand, within Sama_1305 at 1589.689 kb on - strand, within Sama_1305 at 1589.689 kb on - strand, within Sama_1305 at 1589.689 kb on - strand, within Sama_1305 at 1589.692 kb on + strand, within Sama_1305 at 1589.709 kb on + strand, within Sama_1305 at 1589.709 kb on + strand, within Sama_1305 at 1589.709 kb on + strand, within Sama_1305 at 1589.709 kb on + strand, within Sama_1305 at 1589.710 kb on - strand, within Sama_1305 at 1589.710 kb on - strand, within Sama_1305 at 1589.710 kb on - strand, within Sama_1305 at 1589.745 kb on - strand, within Sama_1305 at 1589.745 kb on - strand, within Sama_1305 at 1589.763 kb on + strand, within Sama_1305 at 1589.763 kb on + strand, within Sama_1305 at 1589.763 kb on + strand, within Sama_1305 at 1589.764 kb on - strand, within Sama_1305 at 1589.767 kb on + strand, within Sama_1305 at 1589.767 kb on + strand, within Sama_1305 at 1589.767 kb on + strand, within Sama_1305 at 1589.768 kb on - strand, within Sama_1305 at 1589.768 kb on - strand, within Sama_1305 at 1589.768 kb on - strand, within Sama_1305 at 1589.768 kb on - strand, within Sama_1305 at 1589.768 kb on - strand, within Sama_1305 at 1589.768 kb on - strand, within Sama_1305 at 1589.840 kb on + strand at 1589.934 kb on - strand at 1589.934 kb on - strand at 1589.934 kb on - strand at 1590.044 kb on - strand, within Sama_1306 at 1590.071 kb on + strand, within Sama_1306 at 1590.115 kb on - strand, within Sama_1306 at 1590.115 kb on - strand, within Sama_1306 at 1590.146 kb on + strand, within Sama_1306 at 1590.219 kb on - strand, within Sama_1306 at 1590.289 kb on + strand, within Sama_1306 at 1590.289 kb on + strand, within Sama_1306 at 1590.290 kb on - strand, within Sama_1306 at 1590.290 kb on - strand, within Sama_1306 at 1590.338 kb on - strand, within Sama_1306 at 1590.415 kb on + strand, within Sama_1306 at 1590.453 kb on + strand, within Sama_1306 at 1590.496 kb on - strand, within Sama_1306 at 1590.508 kb on + strand, within Sama_1306 at 1590.508 kb on + strand, within Sama_1306 at 1590.509 kb on - strand, within Sama_1306 at 1590.509 kb on - strand, within Sama_1306 at 1590.509 kb on - strand, within Sama_1306 at 1590.518 kb on + strand, within Sama_1306 at 1590.518 kb on + strand, within Sama_1306 at 1590.614 kb on + strand at 1590.615 kb on - strand at 1590.617 kb on + strand at 1590.617 kb on + strand at 1590.617 kb on + strand at 1590.618 kb on - strand at 1590.646 kb on + strand at 1590.646 kb on + strand at 1590.646 kb on + strand at 1590.647 kb on - strand at 1590.647 kb on - strand at 1590.647 kb on - strand at 1590.647 kb on - strand at 1590.657 kb on - strand at 1590.777 kb on + strand, within Sama_1307 at 1590.778 kb on - strand, within Sama_1307 at 1590.853 kb on + strand at 1590.853 kb on + strand at 1590.858 kb on + strand at 1590.875 kb on + strand at 1590.875 kb on + strand at 1590.877 kb on + strand at 1590.877 kb on + strand at 1590.877 kb on + strand at 1590.877 kb on + strand at 1590.877 kb on + strand at 1590.877 kb on + strand at 1590.878 kb on - strand at 1590.955 kb on - strand at 1590.987 kb on + strand at 1590.987 kb on + strand at 1590.987 kb on + strand at 1591.005 kb on + strand, within Sama_1308 at 1591.005 kb on + strand, within Sama_1308 at 1591.006 kb on - strand, within Sama_1308 at 1591.020 kb on + strand, within Sama_1308 at 1591.135 kb on + strand, within Sama_1308 at 1591.135 kb on + strand, within Sama_1308 at 1591.135 kb on + strand, within Sama_1308 at 1591.263 kb on + strand, within Sama_1308 at 1591.313 kb on - strand at 1591.313 kb on - strand at 1591.313 kb on - strand at 1591.313 kb on - strand at 1591.392 kb on + strand at 1591.392 kb on + strand at 1591.399 kb on + strand at 1591.471 kb on + strand at 1591.471 kb on + strand at 1591.471 kb on + strand at 1591.485 kb on + strand at 1591.497 kb on + strand at 1591.497 kb on + strand at 1591.497 kb on + strand at 1591.509 kb on + strand at 1591.510 kb on - strand at 1591.524 kb on + strand at 1591.525 kb on - strand at 1591.525 kb on - strand at 1591.525 kb on - strand at 1591.557 kb on + strand, within Sama_1309 at 1591.557 kb on + strand, within Sama_1309 at 1591.557 kb on + strand, within Sama_1309 at 1591.557 kb on + strand, within Sama_1309 at 1591.557 kb on + strand, within Sama_1309 at 1591.558 kb on - strand, within Sama_1309 at 1591.558 kb on - strand, within Sama_1309 at 1591.558 kb on - strand, within Sama_1309 at 1591.558 kb on - strand, within Sama_1309 at 1591.558 kb on - strand, within Sama_1309 at 1591.601 kb on - strand, within Sama_1309 at 1591.611 kb on + strand, within Sama_1309 at 1591.612 kb on - strand, within Sama_1309 at 1591.612 kb on - strand, within Sama_1309 at 1591.634 kb on - strand, within Sama_1309
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.078125 mM remove 1,588,919 + Sama_1304 0.86 +0.2 1,588,919 + Sama_1304 0.86 -1.6 1,588,919 + Sama_1304 0.86 -2.3 1,588,919 + Sama_1304 0.86 -0.7 1,589,023 - -0.6 1,589,052 + -0.3 1,589,053 - -0.6 1,589,170 + Sama_1305 0.15 -0.8 1,589,170 + Sama_1305 0.15 -0.8 1,589,171 - Sama_1305 0.15 +0.6 1,589,175 - Sama_1305 0.16 +0.2 1,589,272 + Sama_1305 0.27 +0.8 1,589,284 + Sama_1305 0.29 +0.4 1,589,285 - Sama_1305 0.29 -1.5 1,589,310 - Sama_1305 0.32 +0.2 1,589,311 - Sama_1305 0.32 -1.3 1,589,311 - Sama_1305 0.32 +0.1 1,589,316 + Sama_1305 0.32 -1.4 1,589,316 + Sama_1305 0.32 -0.3 1,589,316 + Sama_1305 0.32 -0.4 1,589,317 - Sama_1305 0.32 -0.8 1,589,317 - Sama_1305 0.32 -1.5 1,589,317 - Sama_1305 0.32 -1.2 1,589,318 + Sama_1305 0.33 -1.6 1,589,318 + Sama_1305 0.33 -1.5 1,589,319 - Sama_1305 0.33 -0.6 1,589,319 - Sama_1305 0.33 -1.4 1,589,336 + Sama_1305 0.35 -0.5 1,589,336 + Sama_1305 0.35 -0.1 1,589,337 - Sama_1305 0.35 -1.9 1,589,337 - Sama_1305 0.35 -0.3 1,589,367 + Sama_1305 0.38 -1.2 1,589,404 + Sama_1305 0.43 +0.1 1,589,547 + Sama_1305 0.60 -1.1 1,589,547 + Sama_1305 0.60 -3.0 1,589,547 + Sama_1305 0.60 +1.0 1,589,547 + Sama_1305 0.60 -1.8 1,589,548 - Sama_1305 0.60 +0.0 1,589,548 - Sama_1305 0.60 +1.2 1,589,570 + Sama_1305 0.63 +0.0 1,589,570 + Sama_1305 0.63 -0.8 1,589,570 + Sama_1305 0.63 -1.0 1,589,570 + Sama_1305 0.63 -0.8 1,589,571 - Sama_1305 0.63 -0.5 1,589,571 - Sama_1305 0.63 +1.1 1,589,594 + Sama_1305 0.66 -1.5 1,589,594 + Sama_1305 0.66 -0.8 1,589,594 + Sama_1305 0.66 +1.8 1,589,594 + Sama_1305 0.66 -1.1 1,589,594 + Sama_1305 0.66 -0.8 1,589,609 + Sama_1305 0.67 -0.1 1,589,609 + Sama_1305 0.67 -2.1 1,589,609 + Sama_1305 0.67 -2.0 1,589,610 - Sama_1305 0.68 -1.2 1,589,635 + Sama_1305 0.70 -0.4 1,589,637 + Sama_1305 0.71 -0.4 1,589,637 + Sama_1305 0.71 +0.4 1,589,637 + Sama_1305 0.71 -1.1 1,589,637 + Sama_1305 0.71 -1.2 1,589,638 - Sama_1305 0.71 -0.7 1,589,638 - Sama_1305 0.71 -0.2 1,589,638 - Sama_1305 0.71 +0.9 1,589,638 - Sama_1305 0.71 -0.8 1,589,642 + Sama_1305 0.71 -1.1 1,589,643 - Sama_1305 0.71 -0.3 1,589,663 + Sama_1305 0.74 +0.0 1,589,686 - Sama_1305 0.77 +0.2 1,589,688 + Sama_1305 0.77 +0.2 1,589,688 + Sama_1305 0.77 -0.9 1,589,688 + Sama_1305 0.77 +0.2 1,589,688 + Sama_1305 0.77 -0.3 1,589,688 + Sama_1305 0.77 -1.2 1,589,688 + Sama_1305 0.77 -2.3 1,589,688 + Sama_1305 0.77 -1.6 1,589,688 + Sama_1305 0.77 +1.8 1,589,688 + Sama_1305 0.77 +0.6 1,589,688 + Sama_1305 0.77 +0.0 1,589,688 + Sama_1305 0.77 -0.9 1,589,688 + Sama_1305 0.77 +0.8 1,589,688 + Sama_1305 0.77 +0.4 1,589,688 + Sama_1305 0.77 +0.6 1,589,688 + Sama_1305 0.77 -0.2 1,589,688 + Sama_1305 0.77 -1.0 1,589,689 - Sama_1305 0.77 -1.0 1,589,689 - Sama_1305 0.77 -0.5 1,589,689 - Sama_1305 0.77 -1.1 1,589,689 - Sama_1305 0.77 -1.0 1,589,689 - Sama_1305 0.77 -1.2 1,589,692 + Sama_1305 0.77 -2.2 1,589,709 + Sama_1305 0.79 +1.8 1,589,709 + Sama_1305 0.79 -0.6 1,589,709 + Sama_1305 0.79 -0.5 1,589,709 + Sama_1305 0.79 -0.9 1,589,710 - Sama_1305 0.79 +0.0 1,589,710 - Sama_1305 0.79 -1.5 1,589,710 - Sama_1305 0.79 -1.7 1,589,745 - Sama_1305 0.84 -0.5 1,589,745 - Sama_1305 0.84 -0.2 1,589,763 + Sama_1305 0.86 +1.4 1,589,763 + Sama_1305 0.86 -1.6 1,589,763 + Sama_1305 0.86 -0.5 1,589,764 - Sama_1305 0.86 -0.0 1,589,767 + Sama_1305 0.86 -1.0 1,589,767 + Sama_1305 0.86 -1.1 1,589,767 + Sama_1305 0.86 +0.8 1,589,768 - Sama_1305 0.86 -1.8 1,589,768 - Sama_1305 0.86 -1.0 1,589,768 - Sama_1305 0.86 -1.8 1,589,768 - Sama_1305 0.86 +0.2 1,589,768 - Sama_1305 0.86 -0.0 1,589,768 - Sama_1305 0.86 -1.2 1,589,840 + +1.1 1,589,934 - +0.0 1,589,934 - +0.2 1,589,934 - +1.2 1,590,044 - Sama_1306 0.22 -0.5 1,590,071 + Sama_1306 0.25 -0.7 1,590,115 - Sama_1306 0.31 +1.2 1,590,115 - Sama_1306 0.31 +0.3 1,590,146 + Sama_1306 0.35 +1.0 1,590,219 - Sama_1306 0.45 -0.2 1,590,289 + Sama_1306 0.54 -0.8 1,590,289 + Sama_1306 0.54 -1.0 1,590,290 - Sama_1306 0.54 -0.9 1,590,290 - Sama_1306 0.54 -0.8 1,590,338 - Sama_1306 0.61 -2.9 1,590,415 + Sama_1306 0.71 +1.8 1,590,453 + Sama_1306 0.76 -1.0 1,590,496 - Sama_1306 0.81 -1.0 1,590,508 + Sama_1306 0.83 -0.4 1,590,508 + Sama_1306 0.83 -0.5 1,590,509 - Sama_1306 0.83 +0.8 1,590,509 - Sama_1306 0.83 +1.2 1,590,509 - Sama_1306 0.83 -1.4 1,590,518 + Sama_1306 0.84 -2.4 1,590,518 + Sama_1306 0.84 -0.5 1,590,614 + +0.5 1,590,615 - +0.2 1,590,617 + -0.3 1,590,617 + -0.5 1,590,617 + -0.2 1,590,618 - -1.5 1,590,646 + -0.5 1,590,646 + +0.6 1,590,646 + -0.2 1,590,647 - +0.5 1,590,647 - -0.2 1,590,647 - -0.2 1,590,647 - -0.9 1,590,657 - +0.1 1,590,777 + Sama_1307 0.30 -0.5 1,590,778 - Sama_1307 0.31 -0.2 1,590,853 + -1.2 1,590,853 + +0.2 1,590,858 + +0.2 1,590,875 + -0.8 1,590,875 + -0.4 1,590,877 + -1.1 1,590,877 + +0.8 1,590,877 + -0.2 1,590,877 + -1.0 1,590,877 + -0.2 1,590,877 + -0.5 1,590,878 - -1.2 1,590,955 - -0.2 1,590,987 + -0.3 1,590,987 + +0.1 1,590,987 + +0.5 1,591,005 + Sama_1308 0.15 +0.7 1,591,005 + Sama_1308 0.15 +0.6 1,591,006 - Sama_1308 0.15 +0.6 1,591,020 + Sama_1308 0.19 +0.2 1,591,135 + Sama_1308 0.50 -0.1 1,591,135 + Sama_1308 0.50 +0.2 1,591,135 + Sama_1308 0.50 +0.4 1,591,263 + Sama_1308 0.84 +0.6 1,591,313 - -0.4 1,591,313 - -0.3 1,591,313 - -0.7 1,591,313 - +0.4 1,591,392 + -1.0 1,591,392 + +0.2 1,591,399 + -0.8 1,591,471 + -1.9 1,591,471 + -0.9 1,591,471 + +0.2 1,591,485 + -0.6 1,591,497 + -0.4 1,591,497 + -0.7 1,591,497 + +1.8 1,591,509 + -0.3 1,591,510 - +1.1 1,591,524 + +0.0 1,591,525 - +1.3 1,591,525 - +0.2 1,591,525 - +1.5 1,591,557 + Sama_1309 0.13 -0.5 1,591,557 + Sama_1309 0.13 -0.2 1,591,557 + Sama_1309 0.13 -0.4 1,591,557 + Sama_1309 0.13 -1.1 1,591,557 + Sama_1309 0.13 -0.5 1,591,558 - Sama_1309 0.13 -0.0 1,591,558 - Sama_1309 0.13 -1.0 1,591,558 - Sama_1309 0.13 -0.1 1,591,558 - Sama_1309 0.13 -0.2 1,591,558 - Sama_1309 0.13 +0.1 1,591,601 - Sama_1309 0.21 -0.3 1,591,611 + Sama_1309 0.23 -1.2 1,591,612 - Sama_1309 0.23 +0.2 1,591,612 - Sama_1309 0.23 -0.4 1,591,634 - Sama_1309 0.27 -0.1
Or see this region's nucleotide sequence