Strain Fitness in Shewanella amazonensis SB2B around Sama_1199

Experiment: nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 5 mM
1,468,724	-		Sama_1198	0.25	-0.8
1,468,735	+		Sama_1198	0.25	+1.2
1,468,783	-		Sama_1198	0.29	-0.1
1,468,785	+		Sama_1198	0.29	+0.2
1,468,927	+		Sama_1198	0.41	-0.0
1,468,927	+		Sama_1198	0.41	+0.6
1,468,927	+		Sama_1198	0.41	-1.0
1,468,961	+		Sama_1198	0.44	-0.0
1,469,146	+		Sama_1198	0.59	-0.0
1,469,146	+		Sama_1198	0.59	+0.1
1,469,216	+		Sama_1198	0.64	+0.1
1,469,216	+		Sama_1198	0.64	+0.5
1,469,216	+		Sama_1198	0.64	-0.3
1,469,216	+		Sama_1198	0.64	-0.7
1,469,217	-		Sama_1198	0.64	+0.4
1,469,217	-		Sama_1198	0.64	-0.1
1,469,217	-		Sama_1198	0.64	+0.6
1,469,227	+		Sama_1198	0.65	-0.4
1,469,538	+				+0.1
1,469,538	+				-0.6
1,469,538	+				-0.1
1,469,595	-				-1.0
1,469,654	+				-0.4
1,469,667	-				-0.3
1,469,686	+				+0.7
1,469,686	+				+1.2
1,469,880	+		Sama_1199	0.12	-2.1
1,469,880	+		Sama_1199	0.12	+0.9
1,469,880	+		Sama_1199	0.12	+0.3
1,469,880	+		Sama_1199	0.12	+0.7
1,469,880	+		Sama_1199	0.12	+0.9
1,469,880	+		Sama_1199	0.12	+0.6
1,469,881	-		Sama_1199	0.12	+0.6
1,469,881	-		Sama_1199	0.12	-0.0
1,469,881	-		Sama_1199	0.12	+1.0
1,469,881	-		Sama_1199	0.12	+0.4
1,469,882	+		Sama_1199	0.12	-1.1
1,469,883	-		Sama_1199	0.12	-0.7
1,469,883	-		Sama_1199	0.12	+0.6
1,469,883	-		Sama_1199	0.12	+0.3
1,469,883	-		Sama_1199	0.12	-0.5
1,469,901	+		Sama_1199	0.13	+1.2
1,469,902	-		Sama_1199	0.14	-1.9
1,469,902	-		Sama_1199	0.14	-0.1
1,469,958	+		Sama_1199	0.18	-0.0
1,470,010	+		Sama_1199	0.22	-1.1
1,470,010	+		Sama_1199	0.22	+0.5
1,470,010	+		Sama_1199	0.22	-0.4
1,470,010	+		Sama_1199	0.22	-0.4
1,470,011	-		Sama_1199	0.22	-0.6
1,470,011	-		Sama_1199	0.22	+0.6
1,470,084	-		Sama_1199	0.27	+1.0
1,470,084	-		Sama_1199	0.27	+0.7
1,470,084	-		Sama_1199	0.27	-0.5
1,470,111	+		Sama_1199	0.29	-0.4
1,470,111	+		Sama_1199	0.29	-0.7
1,470,112	-		Sama_1199	0.29	+2.2
1,470,112	-		Sama_1199	0.29	+0.2
1,470,115	+		Sama_1199	0.30	-0.1
1,470,115	+		Sama_1199	0.30	+0.1
1,470,115	+		Sama_1199	0.30	+1.0
1,470,115	+		Sama_1199	0.30	-0.4
1,470,115	+		Sama_1199	0.30	+0.3
1,470,116	-		Sama_1199	0.30	+0.3
1,470,116	-		Sama_1199	0.30	+0.3
1,470,116	-		Sama_1199	0.30	-0.2
1,470,161	+		Sama_1199	0.33	-0.3
1,470,161	+		Sama_1199	0.33	-0.7
1,470,162	-		Sama_1199	0.33	+0.8
1,470,162	-		Sama_1199	0.33	-0.3
1,470,240	+		Sama_1199	0.39	+1.9
1,470,241	-		Sama_1199	0.39	-0.5
1,470,241	-		Sama_1199	0.39	-0.4
1,470,324	+		Sama_1199	0.46	+0.2
1,470,324	+		Sama_1199	0.46	+0.9
1,470,324	+		Sama_1199	0.46	+1.5
1,470,325	-		Sama_1199	0.46	+0.4
1,470,364	-		Sama_1199	0.49	+0.9
1,470,447	+		Sama_1199	0.55	-0.3
1,470,486	+		Sama_1199	0.58	+0.8
1,470,486	+		Sama_1199	0.58	+0.7
1,470,487	-		Sama_1199	0.58	+0.6
1,470,487	-		Sama_1199	0.58	+0.7
1,470,487	-		Sama_1199	0.58	-0.8
1,470,518	+		Sama_1199	0.60	-0.3
1,470,518	+		Sama_1199	0.60	-0.5
1,470,519	-		Sama_1199	0.60	+0.7
1,470,519	-		Sama_1199	0.60	+1.0
1,470,528	+		Sama_1199	0.61	+0.6
1,470,529	-		Sama_1199	0.61	-0.0
1,470,562	+		Sama_1199	0.64	-0.5
1,470,573	+		Sama_1199	0.64	+0.8
1,470,573	+		Sama_1199	0.64	+0.6
1,470,573	+		Sama_1199	0.64	-0.3
1,470,574	-		Sama_1199	0.65	-2.1
1,470,574	-		Sama_1199	0.65	+0.8
1,470,574	-		Sama_1199	0.65	+0.9
1,470,600	+		Sama_1199	0.67	+1.1
1,470,600	+		Sama_1199	0.67	+0.3
1,470,754	+		Sama_1199	0.78	+0.7
1,470,770	+		Sama_1199	0.79	+0.0
1,470,924	+				-0.5
1,470,924	+				-0.3
1,470,925	-				+0.4
1,471,006	-				+1.8
1,471,031	+				+0.1
1,471,032	-				+2.2
1,471,042	-				-0.4
1,471,094	+				-0.9
1,471,094	+				+1.2
1,471,094	+				-1.1
1,471,212	+				-1.1
1,471,212	+				+0.6
1,471,212	+				-0.4
1,471,213	-				-0.7
1,471,266	+				-1.5
1,471,330	+				-1.6
1,471,346	+				+1.0
1,471,347	-				-1.6
1,471,443	-		Sama_1200	0.15	+0.6
1,471,501	+		Sama_1200	0.19	-1.2
1,471,501	+		Sama_1200	0.19	-0.8
1,471,501	+		Sama_1200	0.19	-1.1
1,471,502	-		Sama_1200	0.19	-0.2
1,471,502	-		Sama_1200	0.19	-1.4
1,471,502	-		Sama_1200	0.19	-0.8
1,471,507	+		Sama_1200	0.19	-1.1
1,471,507	+		Sama_1200	0.19	-1.6
1,471,539	-		Sama_1200	0.21	-1.1
1,471,539	-		Sama_1200	0.21	-1.1
1,471,729	+		Sama_1200	0.32	-0.1
1,471,784	+		Sama_1200	0.36	-2.7
1,471,784	+		Sama_1200	0.36	-1.6
1,471,784	+		Sama_1200	0.36	-0.6
1,471,785	-		Sama_1200	0.36	-1.4
1,471,785	-		Sama_1200	0.36	-2.0
1,471,804	+		Sama_1200	0.37	-0.4
1,471,804	+		Sama_1200	0.37	-1.6
1,471,804	+		Sama_1200	0.37	-0.4
1,471,804	+		Sama_1200	0.37	-2.1
1,471,805	-		Sama_1200	0.37	-0.8
1,471,805	-		Sama_1200	0.37	+0.2
1,471,805	-		Sama_1200	0.37	-1.1
1,471,805	-		Sama_1200	0.37	-1.1
1,471,824	+		Sama_1200	0.38	+0.9
1,471,824	+		Sama_1200	0.38	-0.4
1,471,824	+		Sama_1200	0.38	-1.1
1,471,825	-		Sama_1200	0.38	-2.5
1,471,825	-		Sama_1200	0.38	-2.8
1,471,825	-		Sama_1200	0.38	+0.2
1,471,825	-		Sama_1200	0.38	-1.1
1,471,825	-		Sama_1200	0.38	-1.2
1,471,870	+		Sama_1200	0.41	-1.8
1,471,929	+		Sama_1200	0.44	+0.2
1,471,930	-		Sama_1200	0.44	+1.8
1,471,930	-		Sama_1200	0.44	-1.8
1,471,930	-		Sama_1200	0.44	-2.6