Strain Fitness in Pseudomonas putida KT2440 around PP_2942

Experiment: Apigenin 50 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Apigenin 50 ug/ml
3,344,133	-		PP_5542	0.49	-0.4
3,344,231	-		PP_5542	0.85	-0.2
3,344,231	-		PP_5542	0.85	+0.0
3,344,410	+				-0.1
3,344,411	-				-0.5
3,344,545	-		PP_2941	0.26	-0.1
3,344,545	-		PP_2941	0.26	+0.2
3,344,656	+		PP_2941	0.40	-0.2
3,344,656	+		PP_2941	0.40	-0.3
3,344,657	-		PP_2941	0.40	-0.1
3,344,657	-		PP_2941	0.40	+0.6
3,344,660	-		PP_2941	0.40	-0.7
3,344,660	-		PP_2941	0.40	+0.6
3,344,698	+		PP_2941	0.45	-0.5
3,344,699	-		PP_2941	0.45	+0.0
3,344,903	-		PP_2941	0.71	-0.5
3,344,977	-		PP_2941	0.81	+0.4
3,345,035	+		PP_2941	0.88	+0.2
3,345,162	+				+0.4
3,345,164	+				+0.6
3,345,164	+				-0.1
3,345,164	+				+0.0
3,345,164	+				+0.0
3,345,165	-				-0.5
3,345,165	-				+0.2
3,345,203	+				-0.3
3,345,203	+				-0.2
3,345,203	+				-0.3
3,345,203	+				-0.6
3,345,204	-				-0.5
3,345,204	-				-0.0
3,345,204	-				-1.6
3,345,204	-				-0.2
3,345,344	+		PP_2942	0.16	-0.7
3,345,344	+		PP_2942	0.16	-0.6
3,345,345	-		PP_2942	0.16	-0.3
3,345,433	+		PP_2942	0.22	-0.2
3,345,433	+		PP_2942	0.22	+0.1
3,345,433	+		PP_2942	0.22	-0.2
3,345,434	-		PP_2942	0.22	-0.4
3,345,434	-		PP_2942	0.22	-0.3
3,345,448	+		PP_2942	0.23	-0.4
3,345,448	+		PP_2942	0.23	-0.5
3,345,563	+		PP_2942	0.32	-0.1
3,345,563	+		PP_2942	0.32	-0.8
3,345,564	-		PP_2942	0.32	-0.8
3,345,771	+		PP_2942	0.47	-1.2
3,345,772	-		PP_2942	0.47	-1.2
3,345,772	-		PP_2942	0.47	+0.2
3,345,772	-		PP_2942	0.47	-0.3
3,345,778	+		PP_2942	0.47	-0.3
3,345,778	+		PP_2942	0.47	-0.7
3,345,779	-		PP_2942	0.47	-0.4
3,345,836	+		PP_2942	0.52	-0.3
3,345,836	+		PP_2942	0.52	-0.3
3,345,837	-		PP_2942	0.52	-0.8
3,345,841	+		PP_2942	0.52	-1.2
3,345,841	+		PP_2942	0.52	-0.1
3,345,841	+		PP_2942	0.52	-0.7
3,345,842	-		PP_2942	0.52	-0.4
3,345,842	-		PP_2942	0.52	-0.4
3,345,842	-		PP_2942	0.52	-0.0
3,345,842	-		PP_2942	0.52	-0.6
3,345,937	+		PP_2942	0.59	-0.5
3,345,937	+		PP_2942	0.59	-0.3
3,345,938	-		PP_2942	0.59	-1.4
3,345,938	-		PP_2942	0.59	-0.3
3,345,938	-		PP_2942	0.59	-0.3
3,345,938	-		PP_2942	0.59	-0.2
3,345,938	-		PP_2942	0.59	-0.7
3,345,938	-		PP_2942	0.59	-0.9
3,345,938	-		PP_2942	0.59	-0.6
3,346,160	+		PP_2942	0.75	-0.5
3,346,160	+		PP_2942	0.75	-0.2
3,346,161	-		PP_2942	0.75	-0.8
3,346,168	+		PP_2942	0.76	+0.1
3,346,168	+		PP_2942	0.76	-1.1
3,346,168	+		PP_2942	0.76	-0.4
3,346,169	-		PP_2942	0.76	-0.1
3,346,223	-		PP_2942	0.80	-0.8
3,346,223	-		PP_2942	0.80	-0.1
3,346,391	-				-0.7
3,346,391	-				-0.1
3,346,391	-				-0.5
3,346,424	+				-0.4
3,346,425	-				-0.4
3,346,450	-				-0.4
3,346,551	+				-0.6
3,346,551	+				-0.7
3,346,552	-				-0.3
3,346,552	-				+0.3
3,346,634	+				+0.0
3,346,634	+				+0.1
3,346,635	-				+0.2
3,346,635	-				+0.7
3,346,663	+				+0.0
3,346,663	+				-0.9
3,346,663	+				-0.3
3,346,664	-				-0.2
3,346,664	-				-0.9
3,346,666	-				-1.8
3,346,672	-				-0.5
3,346,777	+				-0.3
3,346,953	+		PP_2943	0.26	-0.4
3,346,953	+		PP_2943	0.26	-0.3
3,347,023	+		PP_2943	0.33	-0.5
3,347,039	+		PP_2943	0.34	+0.1
3,347,241	+		PP_2943	0.54	-1.1
3,347,258	+		PP_2943	0.56	-0.3
3,347,258	+		PP_2943	0.56	-0.4
3,347,284	-		PP_2943	0.59	-0.4
3,347,349	+		PP_2943	0.65	+0.1
3,347,349	+		PP_2943	0.65	-0.0
3,347,349	+		PP_2943	0.65	-0.5
3,347,350	-		PP_2943	0.65	-0.9
3,347,381	+		PP_2943	0.68	-0.2
3,347,382	-		PP_2943	0.68	+0.1