Strain Fitness in Pseudomonas putida KT2440 around PP_3544

Experiment: L-tyrosine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-tyrosine 5 mM (C)
4,015,263	+		PP_3543	0.44	-0.3
4,015,263	+		PP_3543	0.44	+0.1
4,015,264	-		PP_3543	0.44	-0.3
4,015,264	-		PP_3543	0.44	-0.3
4,015,264	-		PP_3543	0.44	-0.6
4,015,264	-		PP_3543	0.44	-0.3
4,015,265	+		PP_3543	0.44	+0.6
4,015,265	+		PP_3543	0.44	-0.0
4,015,266	-		PP_3543	0.44	-0.4
4,015,266	-		PP_3543	0.44	-1.2
4,015,266	-		PP_3543	0.44	-0.9
4,015,591	-		PP_3543	0.67	+0.2
4,015,591	-		PP_3543	0.67	-1.8
4,015,786	-		PP_3543	0.81	-0.5
4,015,786	-		PP_3543	0.81	-0.5
4,015,817	+		PP_3543	0.83	-0.3
4,015,817	+				+0.7
4,015,827	+		PP_3543	0.84	-0.3
4,015,827	+		PP_3543	0.84	-0.1
4,016,054	+				+0.6
4,016,054	+				+0.2
4,016,055	-				-1.5
4,016,055	-				+0.1
4,016,055	-				-0.2
4,016,190	-				+1.4
4,016,237	+				-0.7
4,016,237	+				-0.4
4,016,240	+		PP_3544	0.10	-0.7
4,016,241	-		PP_3544	0.10	+0.1
4,016,241	-		PP_3544	0.10	-1.0
4,016,241	-		PP_3544	0.10	+0.2
4,016,241	-		PP_3544	0.10	-0.4
4,016,241	-		PP_3544	0.10	+0.6
4,016,382	+		PP_3544	0.20	-0.2
4,016,576	+		PP_3544	0.34	-0.6
4,016,577	-				+1.7
4,016,708	+		PP_3544	0.43	-0.4
4,016,708	+		PP_3544	0.43	+0.0
4,016,708	+		PP_3544	0.43	+0.2
4,016,708	+		PP_3544	0.43	-0.2
4,016,708	+		PP_3544	0.43	+0.5
4,016,708	+		PP_3544	0.43	+1.0
4,016,709	-		PP_3544	0.43	+0.5
4,016,709	-		PP_3544	0.43	-0.7
4,016,709	-		PP_3544	0.43	+0.1
4,016,709	-		PP_3544	0.43	+1.2
4,016,709	-		PP_3544	0.43	-0.5
4,016,709	-		PP_3544	0.43	-0.4
4,016,709	-		PP_3544	0.43	-0.2
4,016,709	-		PP_3544	0.43	+0.3
4,016,961	-		PP_3544	0.61	-0.8
4,016,961	-		PP_3544	0.61	-0.1
4,016,961	-		PP_3544	0.61	-1.1
4,016,963	+		PP_3544	0.61	+0.0
4,016,963	+		PP_3544	0.61	-1.0
4,017,164	+		PP_3544	0.76	-0.6
4,017,182	+		PP_3544	0.77	-0.9
4,017,299	+		PP_3544	0.85	+0.3
4,017,438	-				-1.0
4,017,510	-				+1.1
4,017,534	+				-1.5
4,017,535	-				+0.7
4,017,535	-				-0.9
4,017,535	-				+0.3
4,017,535	-				+0.2
4,017,535	-				-0.6
4,017,535	-				-0.1
4,017,577	+				-0.2
4,017,577	+				-1.6
4,017,577	+				+0.5
4,017,577	+				-0.4
4,017,578	-				+0.7
4,017,578	-				-0.6
4,017,578	-				+0.5
4,017,578	-				+0.5
4,017,578	-				+0.3
4,017,806	+		PP_3545	0.14	-0.4
4,017,806	+		PP_3545	0.14	-0.5
4,017,806	+		PP_3545	0.14	+0.5
4,017,806	+		PP_3545	0.14	-2.0
4,017,807	-		PP_3545	0.15	-0.1
4,017,807	-		PP_3545	0.15	+0.1
4,017,810	+		PP_3545	0.15	-1.3
4,017,874	-		PP_3545	0.19	-0.6
4,018,361	+		PP_3545	0.48	+0.7
4,018,370	+		PP_3545	0.48	+0.3
4,018,402	+		PP_3545	0.50	+0.4