Experiment: 48 hr rep2_Tiberius_no_dilution
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yniB and yniC are separated by 146 nucleotides yniC and ydjM are separated by 162 nucleotides ydjM and ydjN are separated by 132 nucleotides
b1726: yniB - predicted inner membrane protein (NCBI), at 1,806,721 to 1,807,257
yniB
b1727: yniC - predicted hydrolase (NCBI), at 1,807,404 to 1,808,072
yniC
b1728: ydjM - predicted inner membrane protein regulated by LexA (RefSeq), at 1,808,235 to 1,808,825
ydjM
b1729: ydjN - predicted transporter (NCBI), at 1,808,958 to 1,810,349
ydjN
Position (kb)
1808
1809 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1807.241 kb on + strand at 1807.253 kb on + strand at 1807.288 kb on + strand at 1807.353 kb on + strand at 1807.363 kb on + strand at 1807.387 kb on - strand at 1807.387 kb on - strand at 1807.470 kb on + strand at 1807.489 kb on + strand, within yniC at 1807.867 kb on - strand, within yniC at 1807.904 kb on - strand, within yniC at 1808.090 kb on + strand at 1808.185 kb on - strand at 1808.203 kb on - strand at 1808.359 kb on + strand, within ydjM at 1808.524 kb on - strand, within ydjM at 1808.524 kb on - strand, within ydjM at 1808.679 kb on + strand, within ydjM at 1808.870 kb on + strand at 1808.924 kb on - strand at 1809.193 kb on + strand, within ydjN at 1809.214 kb on + strand, within ydjN at 1809.242 kb on + strand, within ydjN at 1809.242 kb on + strand, within ydjN at 1809.720 kb on + strand, within ydjN at 1809.720 kb on + strand, within ydjN
Per-strain Table
Position Strand Gene LocusTag Fraction 48 hr rep2_Tiberius_no_dilution remove 1,807,241 + -0.4 1,807,253 + -1.1 1,807,288 + -0.8 1,807,353 + -0.0 1,807,363 + +0.3 1,807,387 - +1.8 1,807,387 - +0.2 1,807,470 + +0.1 1,807,489 + yniC b1727 0.13 -0.3 1,807,867 - yniC b1727 0.69 -0.8 1,807,904 - yniC b1727 0.75 -0.1 1,808,090 + -0.5 1,808,185 - -0.0 1,808,203 - -0.4 1,808,359 + ydjM b1728 0.21 +0.6 1,808,524 - ydjM b1728 0.49 +0.5 1,808,524 - ydjM b1728 0.49 +0.8 1,808,679 + ydjM b1728 0.75 -0.1 1,808,870 + +0.8 1,808,924 - -0.4 1,809,193 + ydjN b1729 0.17 -1.6 1,809,214 + ydjN b1729 0.18 +0.5 1,809,242 + ydjN b1729 0.20 -1.7 1,809,242 + ydjN b1729 0.20 +0.0 1,809,720 + ydjN b1729 0.55 -1.9 1,809,720 + ydjN b1729 0.55 -0.5
Or see this region's nucleotide sequence