Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_08915

Experiment: NLDM_defined_nocarbon with D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrecT and OKGIIK_08910 are separated by 131 nucleotidesOKGIIK_08910 and OKGIIK_08915 are separated by 25 nucleotidesOKGIIK_08915 and OKGIIK_08920 overlap by 4 nucleotidesOKGIIK_08920 and OKGIIK_08925 overlap by 8 nucleotidesOKGIIK_08925 and OKGIIK_08930 overlap by 4 nucleotidesOKGIIK_08930 and OKGIIK_08935 overlap by 8 nucleotides OKGIIK_08905: recT - recombination protein RecT, at 1,917,802 to 1,918,875 recT OKGIIK_08910: OKGIIK_08910 - hypothetical protein, at 1,919,007 to 1,919,471 _08910 OKGIIK_08915: OKGIIK_08915 - hypothetical protein, at 1,919,497 to 1,919,757 _08915 OKGIIK_08920: OKGIIK_08920 - hypothetical protein, at 1,919,754 to 1,919,972 _08920 OKGIIK_08925: OKGIIK_08925 - hypothetical protein, at 1,919,965 to 1,920,363 _08925 OKGIIK_08930: OKGIIK_08930 - hypothetical protein, at 1,920,360 to 1,920,629 _08930 OKGIIK_08935: OKGIIK_08935 - hypothetical protein, at 1,920,622 to 1,920,969 _08935 Position (kb) 1919 1920Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1918.549 kb on + strand, within recTat 1918.550 kb on - strand, within recTat 1918.550 kb on - strand, within recTat 1918.700 kb on + strand, within recTat 1918.838 kb on - strandat 1918.972 kb on - strandat 1919.018 kb on + strandat 1919.019 kb on - strandat 1919.019 kb on - strandat 1919.170 kb on - strand, within OKGIIK_08910at 1919.389 kb on - strand, within OKGIIK_08910at 1919.662 kb on + strand, within OKGIIK_08915at 1919.663 kb on - strand, within OKGIIK_08915at 1919.663 kb on - strand, within OKGIIK_08915at 1919.663 kb on - strand, within OKGIIK_08915at 1919.898 kb on + strand, within OKGIIK_08920at 1919.899 kb on - strand, within OKGIIK_08920at 1919.899 kb on - strand, within OKGIIK_08920at 1919.899 kb on - strand, within OKGIIK_08920at 1919.899 kb on - strand, within OKGIIK_08920at 1919.899 kb on - strand, within OKGIIK_08920at 1919.923 kb on + strand, within OKGIIK_08920at 1919.923 kb on + strand, within OKGIIK_08920at 1919.924 kb on - strand, within OKGIIK_08920at 1919.924 kb on - strand, within OKGIIK_08920at 1919.974 kb on + strandat 1919.974 kb on + strandat 1919.974 kb on + strandat 1919.974 kb on + strandat 1919.974 kb on + strandat 1919.975 kb on - strandat 1919.975 kb on - strandat 1919.975 kb on - strandat 1919.998 kb on - strandat 1920.041 kb on + strand, within OKGIIK_08925at 1920.041 kb on + strand, within OKGIIK_08925at 1920.041 kb on + strand, within OKGIIK_08925at 1920.041 kb on + strand, within OKGIIK_08925at 1920.041 kb on + strand, within OKGIIK_08925at 1920.041 kb on + strand, within OKGIIK_08925at 1920.041 kb on + strand, within OKGIIK_08925at 1920.041 kb on + strand, within OKGIIK_08925at 1920.042 kb on - strand, within OKGIIK_08925at 1920.042 kb on - strand, within OKGIIK_08925at 1920.042 kb on - strand, within OKGIIK_08925at 1920.042 kb on - strand, within OKGIIK_08925at 1920.042 kb on - strand, within OKGIIK_08925at 1920.042 kb on - strand, within OKGIIK_08925at 1920.042 kb on - strand, within OKGIIK_08925at 1920.042 kb on - strand, within OKGIIK_08925at 1920.042 kb on - strand, within OKGIIK_08925at 1920.042 kb on - strand, within OKGIIK_08925at 1920.042 kb on - strand, within OKGIIK_08925at 1920.042 kb on - strand, within OKGIIK_08925at 1920.099 kb on + strand, within OKGIIK_08925at 1920.099 kb on + strand, within OKGIIK_08925at 1920.100 kb on - strand, within OKGIIK_08925at 1920.100 kb on - strand, within OKGIIK_08925at 1920.100 kb on - strand, within OKGIIK_08925at 1920.100 kb on - strand, within OKGIIK_08925at 1920.143 kb on + strand, within OKGIIK_08925at 1920.143 kb on + strand, within OKGIIK_08925at 1920.143 kb on + strand, within OKGIIK_08925at 1920.143 kb on + strand, within OKGIIK_08925at 1920.143 kb on + strand, within OKGIIK_08925at 1920.144 kb on - strand, within OKGIIK_08925at 1920.144 kb on - strand, within OKGIIK_08925at 1920.144 kb on - strand, within OKGIIK_08925at 1920.148 kb on + strand, within OKGIIK_08925at 1920.149 kb on - strand, within OKGIIK_08925at 1920.149 kb on - strand, within OKGIIK_08925at 1920.149 kb on - strand, within OKGIIK_08925at 1920.171 kb on + strand, within OKGIIK_08925at 1920.171 kb on + strand, within OKGIIK_08925at 1920.171 kb on + strand, within OKGIIK_08925at 1920.171 kb on + strand, within OKGIIK_08925at 1920.171 kb on + strand, within OKGIIK_08925at 1920.171 kb on + strand, within OKGIIK_08925at 1920.171 kb on + strand, within OKGIIK_08925at 1920.430 kb on - strand, within OKGIIK_08930at 1920.454 kb on + strand, within OKGIIK_08930at 1920.454 kb on + strand, within OKGIIK_08930at 1920.454 kb on + strand, within OKGIIK_08930at 1920.454 kb on + strand, within OKGIIK_08930at 1920.454 kb on + strand, within OKGIIK_08930at 1920.454 kb on + strand, within OKGIIK_08930at 1920.454 kb on + strand, within OKGIIK_08930at 1920.454 kb on + strand, within OKGIIK_08930at 1920.454 kb on + strand, within OKGIIK_08930at 1920.454 kb on + strand, within OKGIIK_08930at 1920.454 kb on + strand, within OKGIIK_08930at 1920.455 kb on - strand, within OKGIIK_08930at 1920.455 kb on - strand, within OKGIIK_08930at 1920.509 kb on + strand, within OKGIIK_08930at 1920.571 kb on + strand, within OKGIIK_08930at 1920.571 kb on + strand, within OKGIIK_08930at 1920.571 kb on + strand, within OKGIIK_08930at 1920.571 kb on + strand, within OKGIIK_08930at 1920.571 kb on + strand, within OKGIIK_08930at 1920.572 kb on - strand, within OKGIIK_08930at 1920.572 kb on - strand, within OKGIIK_08930at 1920.572 kb on - strand, within OKGIIK_08930at 1920.572 kb on - strand, within OKGIIK_08930at 1920.572 kb on - strand, within OKGIIK_08930at 1920.572 kb on - strand, within OKGIIK_08930at 1920.608 kb on - strandat 1920.628 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined_nocarbon with D-Glucose
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1,918,549 + recT OKGIIK_08905 0.70 +1.3
1,918,550 - recT OKGIIK_08905 0.70 -1.5
1,918,550 - recT OKGIIK_08905 0.70 -0.6
1,918,700 + recT OKGIIK_08905 0.84 -1.3
1,918,838 - +1.1
1,918,972 - -2.3
1,919,018 + +0.8
1,919,019 - +0.2
1,919,019 - +0.2
1,919,170 - OKGIIK_08910 0.35 -0.1
1,919,389 - OKGIIK_08910 0.82 -0.3
1,919,662 + OKGIIK_08915 0.63 -3.6
1,919,663 - OKGIIK_08915 0.64 -0.7
1,919,663 - OKGIIK_08915 0.64 -0.9
1,919,663 - OKGIIK_08915 0.64 -0.9
1,919,898 + OKGIIK_08920 0.66 -1.6
1,919,899 - OKGIIK_08920 0.66 -2.1
1,919,899 - OKGIIK_08920 0.66 +1.5
1,919,899 - OKGIIK_08920 0.66 -0.3
1,919,899 - OKGIIK_08920 0.66 +2.3
1,919,899 - OKGIIK_08920 0.66 -0.1
1,919,923 + OKGIIK_08920 0.77 -2.3
1,919,923 + OKGIIK_08920 0.77 +0.7
1,919,924 - OKGIIK_08920 0.78 +0.7
1,919,924 - OKGIIK_08920 0.78 -2.1
1,919,974 + +2.3
1,919,974 + +0.8
1,919,974 + -0.3
1,919,974 + +0.7
1,919,974 + -1.7
1,919,975 - -1.6
1,919,975 - -0.4
1,919,975 - -2.1
1,919,998 - +0.7
1,920,041 + OKGIIK_08925 0.19 -0.4
1,920,041 + OKGIIK_08925 0.19 -0.6
1,920,041 + OKGIIK_08925 0.19 -0.3
1,920,041 + OKGIIK_08925 0.19 -2.9
1,920,041 + OKGIIK_08925 0.19 -0.3
1,920,041 + OKGIIK_08925 0.19 +1.0
1,920,041 + OKGIIK_08925 0.19 +0.3
1,920,041 + OKGIIK_08925 0.19 -1.6
1,920,042 - OKGIIK_08925 0.19 -0.0
1,920,042 - OKGIIK_08925 0.19 -2.3
1,920,042 - OKGIIK_08925 0.19 +0.1
1,920,042 - OKGIIK_08925 0.19 +1.7
1,920,042 - OKGIIK_08925 0.19 +0.0
1,920,042 - OKGIIK_08925 0.19 -1.3
1,920,042 - OKGIIK_08925 0.19 +0.4
1,920,042 - OKGIIK_08925 0.19 -2.5
1,920,042 - OKGIIK_08925 0.19 +0.2
1,920,042 - OKGIIK_08925 0.19 -1.1
1,920,042 - OKGIIK_08925 0.19 -0.8
1,920,042 - OKGIIK_08925 0.19 +0.7
1,920,099 + OKGIIK_08925 0.34 -0.6
1,920,099 + OKGIIK_08925 0.34 -0.1
1,920,100 - OKGIIK_08925 0.34 +0.7
1,920,100 - OKGIIK_08925 0.34 -0.0
1,920,100 - OKGIIK_08925 0.34 -0.3
1,920,100 - OKGIIK_08925 0.34 -0.9
1,920,143 + OKGIIK_08925 0.45 -1.0
1,920,143 + OKGIIK_08925 0.45 -0.9
1,920,143 + OKGIIK_08925 0.45 -0.0
1,920,143 + OKGIIK_08925 0.45 +1.4
1,920,143 + OKGIIK_08925 0.45 -0.3
1,920,144 - OKGIIK_08925 0.45 +0.3
1,920,144 - OKGIIK_08925 0.45 +0.4
1,920,144 - OKGIIK_08925 0.45 -0.3
1,920,148 + OKGIIK_08925 0.46 +0.3
1,920,149 - OKGIIK_08925 0.46 -0.3
1,920,149 - OKGIIK_08925 0.46 -0.7
1,920,149 - OKGIIK_08925 0.46 +0.2
1,920,171 + OKGIIK_08925 0.52 -0.6
1,920,171 + OKGIIK_08925 0.52 -0.9
1,920,171 + OKGIIK_08925 0.52 -2.5
1,920,171 + OKGIIK_08925 0.52 -3.7
1,920,171 + OKGIIK_08925 0.52 -1.9
1,920,171 + OKGIIK_08925 0.52 -2.1
1,920,171 + OKGIIK_08925 0.52 -0.3
1,920,430 - OKGIIK_08930 0.26 -0.2
1,920,454 + OKGIIK_08930 0.35 -0.9
1,920,454 + OKGIIK_08930 0.35 +0.9
1,920,454 + OKGIIK_08930 0.35 +0.4
1,920,454 + OKGIIK_08930 0.35 -3.0
1,920,454 + OKGIIK_08930 0.35 +2.9
1,920,454 + OKGIIK_08930 0.35 -2.1
1,920,454 + OKGIIK_08930 0.35 -1.1
1,920,454 + OKGIIK_08930 0.35 -2.1
1,920,454 + OKGIIK_08930 0.35 -0.3
1,920,454 + OKGIIK_08930 0.35 -0.6
1,920,454 + OKGIIK_08930 0.35 -0.0
1,920,455 - OKGIIK_08930 0.35 +1.0
1,920,455 - OKGIIK_08930 0.35 -2.1
1,920,509 + OKGIIK_08930 0.55 -0.4
1,920,571 + OKGIIK_08930 0.78 +2.4
1,920,571 + OKGIIK_08930 0.78 -1.6
1,920,571 + OKGIIK_08930 0.78 -0.9
1,920,571 + OKGIIK_08930 0.78 +1.0
1,920,571 + OKGIIK_08930 0.78 +0.7
1,920,572 - OKGIIK_08930 0.79 -1.6
1,920,572 - OKGIIK_08930 0.79 -0.6
1,920,572 - OKGIIK_08930 0.79 -2.1
1,920,572 - OKGIIK_08930 0.79 -1.2
1,920,572 - OKGIIK_08930 0.79 -0.9
1,920,572 - OKGIIK_08930 0.79 +0.1
1,920,608 - +0.5
1,920,628 - -0.3

Or see this region's nucleotide sequence