Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_12285

Experiment: NLDM_defined_nocarbon with D-Glucose and L-Methionine 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NLDM_defined_nocarbon with D-Glucose and L-Methionine 1 mM
2,638,543	+	serB	OKGIIK_12275	0.87	-0.6
2,638,543	+	serB	OKGIIK_12275	0.87	-0.4
2,638,543	+	serB	OKGIIK_12275	0.87	+1.7
2,638,543	+	serB	OKGIIK_12275	0.87	+0.9
2,638,543	+	serB	OKGIIK_12275	0.87	-0.1
2,638,543	+	serB	OKGIIK_12275	0.87	+0.6
2,638,543	+	serB	OKGIIK_12275	0.87	+2.4
2,638,543	+	serB	OKGIIK_12275	0.87	-0.6
2,638,544	-	serB	OKGIIK_12275	0.87	-2.4
2,638,544	-	serB	OKGIIK_12275	0.87	-1.0
2,638,544	-	serB	OKGIIK_12275	0.87	+1.3
2,638,544	-	serB	OKGIIK_12275	0.87	+1.3
2,638,580	-				-1.0
2,638,734	+	trpC	OKGIIK_12280	0.13	-1.3
2,638,734	+	trpC	OKGIIK_12280	0.13	-3.2
2,638,734	+	trpC	OKGIIK_12280	0.13	-2.0
2,638,735	-	trpC	OKGIIK_12280	0.13	-2.0
2,638,735	-	trpC	OKGIIK_12280	0.13	-3.4
2,638,788	+	trpC	OKGIIK_12280	0.19	-1.0
2,638,789	-	trpC	OKGIIK_12280	0.19	-2.1
2,638,789	-	trpC	OKGIIK_12280	0.19	-1.0
2,638,789	-	trpC	OKGIIK_12280	0.19	-2.0
2,638,789	-	trpC	OKGIIK_12280	0.19	-2.6
2,639,181	+	trpC	OKGIIK_12280	0.69	-2.7
2,639,181	+	trpC	OKGIIK_12280	0.69	-0.6
2,639,181	+	trpC	OKGIIK_12280	0.69	-0.6
2,639,182	-	trpC	OKGIIK_12280	0.69	-1.8
2,639,182	-	trpC	OKGIIK_12280	0.69	+1.0
2,639,182	-	trpC	OKGIIK_12280	0.69	+0.0
2,639,182	-	trpC	OKGIIK_12280	0.69	-2.0
2,639,182	-	trpC	OKGIIK_12280	0.69	-0.6
2,639,182	-	trpC	OKGIIK_12280	0.69	+0.0
2,639,447	+				-1.2
2,639,448	-				-0.2
2,639,448	-				+2.4
2,639,448	-				+0.2
2,639,448	-				-0.4
2,639,448	-				+0.6
2,639,448	-				-1.5
2,639,448	-				-0.5
2,639,448	-				+0.0
2,639,448	-				+0.8
2,639,448	-				+0.0
2,639,476	+				+1.0
2,639,477	-				+1.4
2,639,527	+				-0.6
2,639,527	+				+0.4
2,639,527	+				-0.2
2,639,527	+				-0.2
2,639,527	+				-1.6
2,639,527	+				-0.4
2,639,527	+				+0.5
2,639,527	+				+0.0
2,639,527	+				+0.8
2,639,527	+				-1.6
2,639,527	+				+0.2
2,639,528	-				-0.6
2,639,528	-				-0.2
2,639,528	-				-1.0
2,639,528	-				-0.6
2,639,528	-				+1.1
2,639,656	+	trpD	OKGIIK_12285	0.12	-3.6
2,639,656	+	trpD	OKGIIK_12285	0.12	-1.3
2,639,657	-	trpD	OKGIIK_12285	0.12	-1.2
2,639,657	-	trpD	OKGIIK_12285	0.12	-1.3
2,639,657	-	trpD	OKGIIK_12285	0.12	-2.7
2,639,698	-	trpD	OKGIIK_12285	0.16	+1.0
2,639,698	-	trpD	OKGIIK_12285	0.16	-1.0
2,639,815	+	trpD	OKGIIK_12285	0.27	-2.0
2,639,815	+	trpD	OKGIIK_12285	0.27	-1.8
2,639,815	+	trpD	OKGIIK_12285	0.27	+1.0
2,639,815	+	trpD	OKGIIK_12285	0.27	-2.3
2,639,816	-	trpD	OKGIIK_12285	0.27	-2.2
2,639,816	-	trpD	OKGIIK_12285	0.27	-2.7
2,639,816	-	trpD	OKGIIK_12285	0.27	-2.9
2,640,798	+	pabA	OKGIIK_12290	0.36	-0.6
2,640,799	-	pabA	OKGIIK_12290	0.37	-2.8
2,640,799	-	pabA	OKGIIK_12290	0.37	-2.0
2,641,036	+	pabA	OKGIIK_12290	0.76	-3.0
2,641,036	+	pabA	OKGIIK_12290	0.76	-2.3
2,641,036	+	pabA	OKGIIK_12290	0.76	-0.6
2,641,036	+	pabA	OKGIIK_12290	0.76	-3.7
2,641,036	+	pabA	OKGIIK_12290	0.76	-0.6
2,641,036	+	pabA	OKGIIK_12290	0.76	-2.2
2,641,036	+	pabA	OKGIIK_12290	0.76	+1.0
2,641,036	+	pabA	OKGIIK_12290	0.76	-1.3
2,641,036	+	pabA	OKGIIK_12290	0.76	-3.0
2,641,036	+	pabA	OKGIIK_12290	0.76	+0.0
2,641,036	+	pabA	OKGIIK_12290	0.76	+0.0
2,641,036	+	pabA	OKGIIK_12290	0.76	+0.0
2,641,037	-	pabA	OKGIIK_12290	0.76	-2.0
2,641,037	-	pabA	OKGIIK_12290	0.76	-2.3
2,641,037	-	pabA	OKGIIK_12290	0.76	-1.3
2,641,037	-	pabA	OKGIIK_12290	0.76	-0.6
2,641,037	-	pabA	OKGIIK_12290	0.76	-0.3
2,641,037	-	pabA	OKGIIK_12290	0.76	-1.0
2,641,037	-	pabA	OKGIIK_12290	0.76	-2.6
2,641,037	-	pabA	OKGIIK_12290	0.76	-0.6
2,641,037	-	pabA	OKGIIK_12290	0.76	+0.0
2,641,037	-	pabA	OKGIIK_12290	0.76	-1.8
2,641,037	-	pabA	OKGIIK_12290	0.76	-2.4
2,641,037	-	pabA	OKGIIK_12290	0.76	-1.2
2,641,037	-	pabA	OKGIIK_12290	0.76	-0.3
2,641,037	-	pabA	OKGIIK_12290	0.76	-0.6
2,641,037	-	pabA	OKGIIK_12290	0.76	-2.2
2,641,125	+				-2.3
2,641,125	+				-1.8
2,641,125	+				-1.8
2,641,126	-				-0.6
2,641,126	-				+1.0
2,641,140	+				-2.0
2,641,140	+				-0.3
2,641,140	+				-2.6
2,641,140	+				-3.2
2,641,140	+				-1.0
2,641,140	+				-1.0
2,641,140	+				-2.7
2,641,140	+				-1.6
2,641,140	+				-1.3
2,641,141	-				-1.6
2,641,141	-				-1.8
2,641,141	-				-2.9
2,641,141	-				-2.0
2,641,141	-				-2.6
2,641,141	-				+2.0
2,641,141	-				-1.0
2,641,141	-				-2.2
2,641,141	-				-2.8
2,641,155	+				-2.9
2,641,155	+				-0.6
2,641,155	+				-3.0
2,641,155	+				-2.9
2,641,155	+				+1.0
2,641,155	+				-1.0
2,641,155	+				-3.2
2,641,155	+				-1.6
2,641,156	-				-1.8
2,641,156	-				-2.2
2,641,156	-				-1.0
2,641,156	-				-1.3
2,641,156	-				-4.2
2,641,156	-				-0.6
2,641,156	-				+1.8
2,641,156	-				-1.5
2,641,156	-				+0.0
2,641,156	-				-1.0
2,641,156	-				-1.6
2,641,156	-				-2.0
2,641,156	-				-2.2
2,641,156	-				-2.3
2,641,156	-				-3.1
2,641,156	-				-1.3
2,641,156	-				-1.0
2,641,156	-				-1.6
2,641,156	-				-2.8
2,641,156	-				-3.0
2,641,177	+				-0.4
2,641,177	+				-0.6
2,641,177	+				-1.6
2,641,177	+				-2.2
2,641,177	+				-0.2
2,641,177	+				+0.0
2,641,177	+				-0.6
2,641,177	+				-2.3
2,641,178	-				-0.3
2,641,178	-				-2.0
2,641,178	-				+0.5
2,641,178	-				-0.2
2,641,178	-				-0.6
2,641,178	-				+0.4
2,641,178	-				-0.6
2,641,178	-				+1.3
2,641,178	-				-0.1
2,641,186	+				-1.3
2,641,186	+				-0.8
2,641,186	+				-1.0
2,641,186	+				-1.3
2,641,186	+				-2.0
2,641,186	+				-2.6
2,641,186	+				-0.8
2,641,187	-				+0.1
2,641,187	-				-0.8
2,641,187	-				-1.6
2,641,187	-				+0.7
2,641,187	-				-1.6
2,641,187	-				-1.2
2,641,187	-				+0.1
2,641,187	-				-0.4
2,641,187	-				+0.7
2,641,187	-				+0.3
2,641,204	-				+0.7
2,641,289	+				+0.7
2,641,289	+				-2.6
2,641,289	+				-1.7
2,641,289	+				-1.8
2,641,289	+				+0.7
2,641,289	+				-0.6
2,641,289	+				-2.2
2,641,289	+				-0.6
2,641,289	+				-1.0
2,641,289	+				+1.3
2,641,289	+				-1.0
2,641,289	+				-0.7
2,641,289	+				-0.6
2,641,289	+				-2.3
2,641,289	+				-2.4
2,641,289	+				-1.1
2,641,289	+				-0.6
2,641,289	+				-0.6
2,641,289	+				+1.4
2,641,289	+				+0.0
2,641,289	+				-1.8
2,641,289	+				-0.4
2,641,289	+				-0.1
2,641,289	+				-0.7
2,641,289	+				-1.8
2,641,290	-				+0.6
2,641,290	-				-1.6
2,641,290	-				+0.8
2,641,290	-				-0.2
2,641,290	-				+1.3
2,641,290	-				+0.0
2,641,290	-				+2.0
2,641,290	-				-1.6
2,641,290	-				+2.6
2,641,290	-				+1.5
2,641,290	-				+0.0
2,641,290	-				+0.6
2,641,290	-				+0.8
2,641,290	-				-0.6
2,641,290	-				-1.3
2,641,290	-				-1.2
2,641,290	-				-1.3
2,641,290	-				-0.2
2,641,290	-				-0.4
2,641,290	-				-0.3
2,641,290	-				+1.3
2,641,290	-				-1.0
2,641,290	-				-2.0
2,641,290	-				+0.2
2,641,290	-				-0.8
2,641,290	-				+1.3
2,641,290	-				-0.3
2,641,290	-				-0.6
2,641,290	-				+1.6
2,641,290	-				-1.0
2,641,302	-				+0.1
2,641,302	-				+0.0
2,641,309	-				+0.3
2,641,380	+				-1.0
2,641,380	+				-1.3
2,641,380	+				-3.1
2,641,380	+				-0.6
2,641,380	+				+0.5
2,641,381	-				+1.0
2,641,381	-				+2.6
2,641,381	-				-0.6
2,641,381	-				+0.0
2,641,511	+				+1.0
2,641,511	+				-0.1
2,641,511	+				-1.3
2,641,511	+				+0.6
2,641,511	+				+0.2
2,641,512	-				+2.0
2,641,512	-				+2.0
2,641,512	-				+2.4
2,641,512	-				-1.0
2,641,548	+				+1.0
2,641,548	+				-1.0
2,641,548	+				+0.7
2,641,548	+				+0.7
2,641,548	+				-1.8
2,641,549	-				-0.3
2,641,549	-				+0.0