Experiment: NLDM_defined_nocarbon with D-Glucose and L-Methionine 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_03370 and OKGIIK_03375 are separated by 48 nucleotides OKGIIK_03375 and OKGIIK_03380 are separated by 105 nucleotides OKGIIK_03380 and hflC are separated by 16 nucleotides
OKGIIK_03370: OKGIIK_03370 - DUF423 domain-containing protein, at 755,172 to 755,549
_03370
OKGIIK_03375: OKGIIK_03375 - hypothetical protein, at 755,598 to 756,008
_03375
OKGIIK_03380: OKGIIK_03380 - Arc family DNA binding domain-containing protein, at 756,114 to 756,308
_03380
OKGIIK_03385: hflC - SPFH domain / Band 7 family, at 756,325 to 757,191
hflC
Position (kb) 756
757 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 755.123 kb on + strand at 755.123 kb on + strand at 755.123 kb on + strand at 755.123 kb on + strand at 755.123 kb on + strand at 755.123 kb on + strand at 755.123 kb on + strand at 755.123 kb on + strand at 755.123 kb on + strand at 755.123 kb on + strand at 755.123 kb on + strand at 755.124 kb on - strand at 755.124 kb on - strand at 755.124 kb on - strand at 755.124 kb on - strand at 755.124 kb on - strand at 755.124 kb on - strand at 755.124 kb on - strand at 755.195 kb on + strand at 755.195 kb on + strand at 755.195 kb on + strand at 755.195 kb on + strand at 755.195 kb on + strand at 755.195 kb on + strand at 755.195 kb on + strand at 755.195 kb on + strand at 755.196 kb on - strand at 755.196 kb on - strand at 755.196 kb on - strand at 755.196 kb on - strand at 755.316 kb on + strand, within OKGIIK_03370 at 755.316 kb on + strand, within OKGIIK_03370 at 755.316 kb on + strand, within OKGIIK_03370 at 755.316 kb on + strand, within OKGIIK_03370 at 755.316 kb on + strand, within OKGIIK_03370 at 755.316 kb on + strand, within OKGIIK_03370 at 755.316 kb on + strand, within OKGIIK_03370 at 755.316 kb on + strand, within OKGIIK_03370 at 755.316 kb on + strand, within OKGIIK_03370 at 755.316 kb on + strand, within OKGIIK_03370 at 755.316 kb on + strand, within OKGIIK_03370 at 755.316 kb on + strand, within OKGIIK_03370 at 755.316 kb on + strand, within OKGIIK_03370 at 755.316 kb on + strand, within OKGIIK_03370 at 755.316 kb on + strand, within OKGIIK_03370 at 755.316 kb on + strand, within OKGIIK_03370 at 755.317 kb on - strand, within OKGIIK_03370 at 755.317 kb on - strand, within OKGIIK_03370 at 755.317 kb on - strand, within OKGIIK_03370 at 755.317 kb on - strand, within OKGIIK_03370 at 755.317 kb on - strand, within OKGIIK_03370 at 755.317 kb on - strand, within OKGIIK_03370 at 755.317 kb on - strand, within OKGIIK_03370 at 755.317 kb on - strand, within OKGIIK_03370 at 755.317 kb on - strand, within OKGIIK_03370 at 755.433 kb on + strand, within OKGIIK_03370 at 755.433 kb on + strand, within OKGIIK_03370 at 755.433 kb on + strand, within OKGIIK_03370 at 755.434 kb on - strand, within OKGIIK_03370 at 755.434 kb on - strand, within OKGIIK_03370 at 755.434 kb on - strand, within OKGIIK_03370 at 755.434 kb on - strand, within OKGIIK_03370 at 755.434 kb on - strand, within OKGIIK_03370 at 755.434 kb on - strand, within OKGIIK_03370 at 755.434 kb on - strand, within OKGIIK_03370 at 755.434 kb on - strand, within OKGIIK_03370 at 755.696 kb on - strand, within OKGIIK_03375 at 755.835 kb on + strand, within OKGIIK_03375 at 755.835 kb on + strand, within OKGIIK_03375 at 755.835 kb on + strand, within OKGIIK_03375 at 755.835 kb on + strand, within OKGIIK_03375 at 755.835 kb on + strand, within OKGIIK_03375 at 755.835 kb on + strand, within OKGIIK_03375 at 755.835 kb on + strand, within OKGIIK_03375 at 755.836 kb on - strand, within OKGIIK_03375 at 755.836 kb on - strand, within OKGIIK_03375 at 755.836 kb on - strand, within OKGIIK_03375 at 755.836 kb on - strand, within OKGIIK_03375 at 755.836 kb on - strand, within OKGIIK_03375 at 755.836 kb on - strand, within OKGIIK_03375 at 756.094 kb on + strand at 756.096 kb on + strand at 756.096 kb on + strand at 756.096 kb on + strand at 756.096 kb on + strand at 756.096 kb on + strand at 756.096 kb on + strand at 756.096 kb on + strand at 756.096 kb on + strand at 756.096 kb on + strand at 756.096 kb on + strand at 756.096 kb on + strand at 756.096 kb on + strand at 756.096 kb on + strand at 756.096 kb on + strand at 756.096 kb on + strand at 756.096 kb on + strand at 756.096 kb on + strand at 756.096 kb on + strand at 756.096 kb on + strand at 756.096 kb on + strand at 756.096 kb on + strand at 756.096 kb on + strand at 756.096 kb on + strand at 756.096 kb on + strand at 756.097 kb on - strand at 756.097 kb on - strand at 756.097 kb on - strand at 756.097 kb on - strand at 756.097 kb on - strand at 756.097 kb on - strand at 756.097 kb on - strand at 756.097 kb on - strand at 756.097 kb on - strand at 756.097 kb on - strand at 756.097 kb on - strand at 756.097 kb on - strand at 756.097 kb on - strand at 756.097 kb on - strand at 756.097 kb on - strand at 756.097 kb on - strand at 756.097 kb on - strand at 756.200 kb on - strand, within OKGIIK_03380 at 756.200 kb on - strand, within OKGIIK_03380 at 756.200 kb on - strand, within OKGIIK_03380 at 756.200 kb on - strand, within OKGIIK_03380 at 756.200 kb on - strand, within OKGIIK_03380 at 756.200 kb on - strand, within OKGIIK_03380 at 756.200 kb on - strand, within OKGIIK_03380 at 756.287 kb on - strand, within OKGIIK_03380 at 756.332 kb on + strand at 756.332 kb on + strand at 756.332 kb on + strand at 756.332 kb on + strand at 756.333 kb on - strand at 756.333 kb on - strand at 756.333 kb on - strand at 756.333 kb on - strand at 756.333 kb on - strand at 756.333 kb on - strand at 756.333 kb on - strand at 756.333 kb on - strand at 756.333 kb on - strand at 756.333 kb on - strand at 756.333 kb on - strand at 756.570 kb on - strand, within hflC at 756.707 kb on + strand, within hflC at 756.707 kb on + strand, within hflC at 756.707 kb on + strand, within hflC at 756.707 kb on + strand, within hflC at 756.707 kb on + strand, within hflC at 756.708 kb on - strand, within hflC at 756.708 kb on - strand, within hflC at 756.708 kb on - strand, within hflC at 756.713 kb on + strand, within hflC at 756.713 kb on + strand, within hflC at 756.713 kb on + strand, within hflC at 756.713 kb on + strand, within hflC at 756.714 kb on - strand, within hflC at 756.714 kb on - strand, within hflC at 756.714 kb on - strand, within hflC at 756.714 kb on - strand, within hflC at 756.770 kb on + strand, within hflC at 756.770 kb on + strand, within hflC at 756.770 kb on + strand, within hflC at 756.770 kb on + strand, within hflC at 756.771 kb on - strand, within hflC at 756.771 kb on - strand, within hflC at 756.771 kb on - strand, within hflC at 756.968 kb on + strand, within hflC at 756.968 kb on + strand, within hflC at 756.968 kb on + strand, within hflC at 756.968 kb on + strand, within hflC at 756.968 kb on + strand, within hflC at 756.968 kb on + strand, within hflC at 756.969 kb on - strand, within hflC at 756.969 kb on - strand, within hflC at 756.969 kb on - strand, within hflC at 756.969 kb on - strand, within hflC at 756.969 kb on - strand, within hflC at 756.969 kb on - strand, within hflC at 756.969 kb on - strand, within hflC at 756.969 kb on - strand, within hflC at 757.238 kb on - strand at 757.298 kb on + strand at 757.298 kb on + strand at 757.298 kb on + strand at 757.298 kb on + strand at 757.298 kb on + strand at 757.298 kb on + strand at 757.298 kb on + strand at 757.298 kb on + strand at 757.298 kb on + strand at 757.298 kb on + strand at 757.298 kb on + strand at 757.298 kb on + strand at 757.298 kb on + strand at 757.298 kb on + strand at 757.298 kb on + strand at 757.298 kb on + strand at 757.298 kb on + strand at 757.298 kb on + strand at 757.299 kb on - strand at 757.299 kb on - strand at 757.299 kb on - strand at 757.299 kb on - strand at 757.299 kb on - strand at 757.299 kb on - strand at 757.299 kb on - strand at 757.299 kb on - strand at 757.299 kb on - strand at 757.299 kb on - strand at 757.299 kb on - strand at 757.299 kb on - strand at 757.299 kb on - strand at 757.299 kb on - strand at 757.299 kb on - strand at 757.299 kb on - strand at 757.299 kb on - strand at 757.299 kb on - strand at 757.299 kb on - strand at 757.299 kb on - strand at 757.299 kb on - strand at 757.299 kb on - strand at 757.299 kb on - strand at 757.299 kb on - strand at 757.299 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined_nocarbon with D-Glucose and L-Methionine 1 mM remove 755,123 + -0.7 755,123 + +0.4 755,123 + -0.1 755,123 + +0.2 755,123 + -0.5 755,123 + +0.6 755,123 + +0.7 755,123 + +0.2 755,123 + -0.7 755,123 + -0.4 755,123 + +0.9 755,124 - -1.1 755,124 - -0.7 755,124 - -1.2 755,124 - +0.3 755,124 - +0.5 755,124 - -0.1 755,124 - -1.3 755,195 + +0.7 755,195 + -0.4 755,195 + +1.6 755,195 + +1.1 755,195 + +1.1 755,195 + +0.5 755,195 + -2.5 755,195 + -0.9 755,196 - +0.9 755,196 - +0.7 755,196 - +0.5 755,196 - +0.9 755,316 + OKGIIK_03370 0.38 +0.7 755,316 + OKGIIK_03370 0.38 +1.2 755,316 + OKGIIK_03370 0.38 -1.7 755,316 + OKGIIK_03370 0.38 +0.2 755,316 + OKGIIK_03370 0.38 +0.2 755,316 + OKGIIK_03370 0.38 -0.1 755,316 + OKGIIK_03370 0.38 -1.7 755,316 + OKGIIK_03370 0.38 -1.1 755,316 + OKGIIK_03370 0.38 +1.3 755,316 + OKGIIK_03370 0.38 +2.3 755,316 + OKGIIK_03370 0.38 -1.6 755,316 + OKGIIK_03370 0.38 -0.5 755,316 + OKGIIK_03370 0.38 -0.6 755,316 + OKGIIK_03370 0.38 -0.8 755,316 + OKGIIK_03370 0.38 +0.3 755,316 + OKGIIK_03370 0.38 +1.2 755,317 - OKGIIK_03370 0.38 -1.5 755,317 - OKGIIK_03370 0.38 -1.1 755,317 - OKGIIK_03370 0.38 -0.4 755,317 - OKGIIK_03370 0.38 -1.1 755,317 - OKGIIK_03370 0.38 -0.4 755,317 - OKGIIK_03370 0.38 -1.1 755,317 - OKGIIK_03370 0.38 +1.9 755,317 - OKGIIK_03370 0.38 +0.7 755,317 - OKGIIK_03370 0.38 +0.3 755,433 + OKGIIK_03370 0.69 +0.9 755,433 + OKGIIK_03370 0.69 -0.6 755,433 + OKGIIK_03370 0.69 -1.7 755,434 - OKGIIK_03370 0.69 -1.7 755,434 - OKGIIK_03370 0.69 +1.5 755,434 - OKGIIK_03370 0.69 -0.8 755,434 - OKGIIK_03370 0.69 -0.8 755,434 - OKGIIK_03370 0.69 +0.4 755,434 - OKGIIK_03370 0.69 -0.9 755,434 - OKGIIK_03370 0.69 -1.7 755,434 - OKGIIK_03370 0.69 -0.6 755,696 - OKGIIK_03375 0.24 -1.1 755,835 + OKGIIK_03375 0.58 +2.3 755,835 + OKGIIK_03375 0.58 -0.5 755,835 + OKGIIK_03375 0.58 -0.1 755,835 + OKGIIK_03375 0.58 +0.9 755,835 + OKGIIK_03375 0.58 +0.5 755,835 + OKGIIK_03375 0.58 -1.5 755,835 + OKGIIK_03375 0.58 -0.7 755,836 - OKGIIK_03375 0.58 +1.9 755,836 - OKGIIK_03375 0.58 -0.1 755,836 - OKGIIK_03375 0.58 -0.4 755,836 - OKGIIK_03375 0.58 -0.1 755,836 - OKGIIK_03375 0.58 +0.1 755,836 - OKGIIK_03375 0.58 -0.1 756,094 + +0.9 756,096 + -1.1 756,096 + +1.5 756,096 + -0.3 756,096 + +0.5 756,096 + -1.1 756,096 + -2.6 756,096 + -0.4 756,096 + -0.1 756,096 + -0.5 756,096 + -1.7 756,096 + -0.3 756,096 + -1.7 756,096 + -0.1 756,096 + -1.9 756,096 + -0.1 756,096 + -1.1 756,096 + -1.4 756,096 + -1.9 756,096 + -0.9 756,096 + +1.0 756,096 + -0.9 756,096 + -0.0 756,096 + -2.7 756,096 + -3.4 756,097 - +1.0 756,097 - +0.3 756,097 - -0.1 756,097 - +0.9 756,097 - -0.5 756,097 - -1.1 756,097 - -0.1 756,097 - -1.6 756,097 - -0.7 756,097 - -0.1 756,097 - +1.3 756,097 - -0.7 756,097 - -1.1 756,097 - +0.1 756,097 - -1.1 756,097 - +0.1 756,097 - +1.0 756,200 - OKGIIK_03380 0.44 -0.8 756,200 - OKGIIK_03380 0.44 -1.7 756,200 - OKGIIK_03380 0.44 -1.7 756,200 - OKGIIK_03380 0.44 -0.2 756,200 - OKGIIK_03380 0.44 -1.7 756,200 - OKGIIK_03380 0.44 -0.4 756,200 - OKGIIK_03380 0.44 -2.1 756,287 - OKGIIK_03380 0.89 -0.4 756,332 + +1.5 756,332 + +2.3 756,332 + +1.5 756,332 + +0.9 756,333 - -1.4 756,333 - -1.0 756,333 - +0.5 756,333 - -1.3 756,333 - +0.5 756,333 - -1.3 756,333 - +0.9 756,333 - -1.1 756,333 - -0.7 756,333 - -1.2 756,333 - -0.6 756,570 - hflC OKGIIK_03385 0.28 +1.4 756,707 + hflC OKGIIK_03385 0.44 -0.7 756,707 + hflC OKGIIK_03385 0.44 -0.7 756,707 + hflC OKGIIK_03385 0.44 -1.1 756,707 + hflC OKGIIK_03385 0.44 +0.3 756,707 + hflC OKGIIK_03385 0.44 +0.1 756,708 - hflC OKGIIK_03385 0.44 -1.0 756,708 - hflC OKGIIK_03385 0.44 -0.3 756,708 - hflC OKGIIK_03385 0.44 -1.4 756,713 + hflC OKGIIK_03385 0.45 -1.1 756,713 + hflC OKGIIK_03385 0.45 +0.9 756,713 + hflC OKGIIK_03385 0.45 -1.1 756,713 + hflC OKGIIK_03385 0.45 +0.0 756,714 - hflC OKGIIK_03385 0.45 -0.9 756,714 - hflC OKGIIK_03385 0.45 -0.7 756,714 - hflC OKGIIK_03385 0.45 -0.7 756,714 - hflC OKGIIK_03385 0.45 +2.9 756,770 + hflC OKGIIK_03385 0.51 +0.9 756,770 + hflC OKGIIK_03385 0.51 -1.7 756,770 + hflC OKGIIK_03385 0.51 -1.7 756,770 + hflC OKGIIK_03385 0.51 -1.7 756,771 - hflC OKGIIK_03385 0.51 -1.1 756,771 - hflC OKGIIK_03385 0.51 +1.0 756,771 - hflC OKGIIK_03385 0.51 -1.9 756,968 + hflC OKGIIK_03385 0.74 -0.7 756,968 + hflC OKGIIK_03385 0.74 -1.4 756,968 + hflC OKGIIK_03385 0.74 +0.5 756,968 + hflC OKGIIK_03385 0.74 -0.3 756,968 + hflC OKGIIK_03385 0.74 -2.3 756,968 + hflC OKGIIK_03385 0.74 +0.6 756,969 - hflC OKGIIK_03385 0.74 -1.9 756,969 - hflC OKGIIK_03385 0.74 -0.1 756,969 - hflC OKGIIK_03385 0.74 -2.1 756,969 - hflC OKGIIK_03385 0.74 -0.4 756,969 - hflC OKGIIK_03385 0.74 +0.1 756,969 - hflC OKGIIK_03385 0.74 -1.1 756,969 - hflC OKGIIK_03385 0.74 +0.0 756,969 - hflC OKGIIK_03385 0.74 +0.1 757,238 - -1.4 757,298 + +1.5 757,298 + +0.0 757,298 + -0.9 757,298 + -0.7 757,298 + +0.3 757,298 + +1.3 757,298 + +1.2 757,298 + -1.4 757,298 + +0.0 757,298 + -1.4 757,298 + -0.9 757,298 + -0.7 757,298 + -0.1 757,298 + -1.1 757,298 + +0.3 757,298 + -1.4 757,298 + +0.2 757,298 + +1.2 757,299 - +0.6 757,299 - -1.1 757,299 - +0.9 757,299 - -0.4 757,299 - -0.8 757,299 - -2.3 757,299 - -0.1 757,299 - -0.1 757,299 - -0.9 757,299 - +0.9 757,299 - -0.6 757,299 - +0.3 757,299 - +0.3 757,299 - +0.9 757,299 - +0.1 757,299 - -0.7 757,299 - -1.4 757,299 - +0.6 757,299 - +0.1 757,299 - -0.4 757,299 - -3.0 757,299 - +0.9 757,299 - +4.5 757,299 - -0.2 757,299 - -2.1
Or see this region's nucleotide sequence