Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS15730

Experiment: Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
3,328,175	+		ABCV34_RS15715	0.65	+0.6
3,328,175	+		ABCV34_RS15715	0.65	+0.2
3,328,175	+		ABCV34_RS15715	0.65	-4.0
3,328,176	-		ABCV34_RS15715	0.66	+0.4
3,328,192	+		ABCV34_RS15715	0.69	-0.9
3,328,193	-		ABCV34_RS15715	0.69	+0.5
3,328,193	-		ABCV34_RS15715	0.69	-3.2
3,328,193	-		ABCV34_RS15715	0.69	+0.0
3,328,230	+		ABCV34_RS15715	0.76	+1.0
3,328,231	-		ABCV34_RS15715	0.76	-0.4
3,328,231	-		ABCV34_RS15715	0.76	-1.6
3,328,231	-		ABCV34_RS15715	0.76	-0.7
3,328,231	-		ABCV34_RS15715	0.76	-1.5
3,328,231	-		ABCV34_RS15715	0.76	+0.0
3,328,234	-		ABCV34_RS15715	0.76	+1.9
3,328,383	+				-3.3
3,328,383	+				-3.5
3,328,383	+				-1.2
3,328,384	-				-0.4
3,328,398	-				-0.4
3,328,398	-				-3.2
3,328,398	-				-0.7
3,328,429	+		ABCV34_RS15720	0.18	-3.7
3,328,429	+		ABCV34_RS15720	0.18	-1.4
3,328,429	+		ABCV34_RS15720	0.18	-0.2
3,328,429	+		ABCV34_RS15720	0.18	-0.1
3,328,429	+		ABCV34_RS15720	0.18	-1.0
3,328,429	+		ABCV34_RS15720	0.18	-2.1
3,328,430	-		ABCV34_RS15720	0.19	-1.8
3,328,430	-		ABCV34_RS15720	0.19	+1.3
3,328,430	-		ABCV34_RS15720	0.19	-2.9
3,328,430	-		ABCV34_RS15720	0.19	-1.5
3,328,430	-		ABCV34_RS15720	0.19	+0.4
3,328,430	-		ABCV34_RS15720	0.19	+0.5
3,328,439	+		ABCV34_RS15720	0.21	+0.1
3,328,439	+		ABCV34_RS15720	0.21	+0.3
3,328,439	+		ABCV34_RS15720	0.21	-1.2
3,328,439	+		ABCV34_RS15720	0.21	-0.8
3,328,440	-		ABCV34_RS15720	0.22	-1.6
3,328,440	-		ABCV34_RS15720	0.22	+0.1
3,328,440	-		ABCV34_RS15720	0.22	-0.7
3,328,441	+		ABCV34_RS15720	0.22	-1.5
3,328,441	+		ABCV34_RS15720	0.22	-2.6
3,328,441	+		ABCV34_RS15720	0.22	-2.0
3,328,442	-		ABCV34_RS15720	0.22	-3.9
3,328,442	-		ABCV34_RS15720	0.22	+0.4
3,328,442	-		ABCV34_RS15720	0.22	-1.6
3,328,442	-		ABCV34_RS15720	0.22	-0.9
3,328,589	+		ABCV34_RS15720	0.66	-0.2
3,328,590	-		ABCV34_RS15720	0.66	-2.5
3,328,606	+		ABCV34_RS15720	0.71	-1.9
3,328,606	+		ABCV34_RS15720	0.71	-0.3
3,328,606	+		ABCV34_RS15720	0.71	-2.7
3,328,606	+		ABCV34_RS15720	0.71	-1.9
3,328,606	+		ABCV34_RS15720	0.71	-2.8
3,328,606	+		ABCV34_RS15720	0.71	-3.1
3,328,606	+		ABCV34_RS15720	0.71	-0.6
3,328,606	+		ABCV34_RS15720	0.71	-3.2
3,328,606	+		ABCV34_RS15720	0.71	+0.7
3,328,607	-		ABCV34_RS15720	0.71	-2.7
3,328,607	-		ABCV34_RS15720	0.71	-1.6
3,328,607	-		ABCV34_RS15720	0.71	-1.7
3,328,607	-		ABCV34_RS15720	0.71	-0.9
3,328,607	-		ABCV34_RS15720	0.71	-1.5
3,328,607	-		ABCV34_RS15720	0.71	-2.7
3,328,607	-		ABCV34_RS15720	0.71	-0.4
3,328,607	-		ABCV34_RS15720	0.71	+1.5
3,328,607	-		ABCV34_RS15720	0.71	-0.3
3,328,607	-		ABCV34_RS15720	0.71	-0.6
3,328,607	-		ABCV34_RS15720	0.71	+0.1
3,328,607	-		ABCV34_RS15720	0.71	-3.3
3,328,607	-		ABCV34_RS15720	0.71	-0.2
3,328,607	-		ABCV34_RS15720	0.71	-1.1
3,328,629	+		ABCV34_RS15720	0.78	+0.1
3,328,629	+		ABCV34_RS15720	0.78	-1.7
3,328,629	+		ABCV34_RS15720	0.78	-1.4
3,328,630	-		ABCV34_RS15720	0.78	-0.6
3,328,630	-		ABCV34_RS15720	0.78	-0.6
3,328,630	-		ABCV34_RS15720	0.78	-0.9
3,328,630	-		ABCV34_RS15720	0.78	-0.9
3,328,630	-		ABCV34_RS15720	0.78	-1.0
3,328,854	+		ABCV34_RS15725	0.55	-0.9
3,328,855	-		ABCV34_RS15725	0.55	-1.6
3,328,855	-		ABCV34_RS15725	0.55	-1.6
3,328,927	+		ABCV34_RS15725	0.80	-1.5
3,328,928	-		ABCV34_RS15725	0.80	-1.4
3,328,972	+				+0.8
3,328,973	-				-2.6
3,328,973	-				-1.9
3,328,996	+				-1.9
3,328,996	+				-0.8
3,328,996	+				-3.8
3,328,996	+				-1.7
3,328,997	-				+0.0
3,328,997	-				-1.7
3,328,997	-				-2.3
3,328,997	-				+0.4
3,328,997	-				-1.4
3,328,997	-				-1.9
3,329,087	+				-3.3
3,329,087	+				+0.1
3,329,128	-				-0.8
3,329,195	-				-2.1
3,329,195	-				-1.9
3,329,319	+		ABCV34_RS15730	0.24	-1.1
3,329,319	+		ABCV34_RS15730	0.24	-2.4
3,329,471	+		ABCV34_RS15730	0.49	-2.0
3,329,471	+		ABCV34_RS15730	0.49	-1.1
3,329,472	-		ABCV34_RS15730	0.50	+1.0
3,329,472	-		ABCV34_RS15730	0.50	-1.0
3,329,518	+		ABCV34_RS15730	0.57	+2.1
3,329,518	+		ABCV34_RS15730	0.57	+1.1
3,329,518	+		ABCV34_RS15730	0.57	-0.0
3,329,518	+		ABCV34_RS15730	0.57	-2.9
3,329,518	+		ABCV34_RS15730	0.57	-0.0
3,329,518	+		ABCV34_RS15730	0.57	-1.8
3,329,519	-		ABCV34_RS15730	0.57	-1.4
3,329,519	-		ABCV34_RS15730	0.57	+1.5
3,329,519	-		ABCV34_RS15730	0.57	-2.3
3,329,545	+		ABCV34_RS15730	0.62	+1.0
3,329,545	+		ABCV34_RS15730	0.62	-1.0
3,329,546	-		ABCV34_RS15730	0.62	-1.2
3,329,546	-		ABCV34_RS15730	0.62	-0.1
3,329,569	-		ABCV34_RS15730	0.66	+0.7
3,329,569	-		ABCV34_RS15730	0.66	-2.3
3,329,708	+		ABCV34_RS15730	0.88	-0.5
3,329,708	+		ABCV34_RS15730	0.88	-0.9
3,329,709	-		ABCV34_RS15730	0.89	+2.3
3,329,709	-		ABCV34_RS15730	0.89	-1.5
3,329,709	-		ABCV34_RS15730	0.89	-0.0
3,329,709	-		ABCV34_RS15730	0.89	+1.3
3,329,719	+				-0.8
3,329,719	+				-1.5
3,329,720	-				-2.6
3,329,745	+				-2.3
3,329,745	+				-2.8
3,329,746	-				-0.0
3,329,746	-				-0.7
3,329,746	-				-0.0
3,329,746	-				-0.6
3,329,776	+				+1.3
3,329,776	+				-2.6
3,329,776	+				-1.9
3,329,777	-				-2.4
3,329,777	-				+2.3
3,329,777	-				-0.2
3,329,815	+				-1.7
3,329,878	+				-0.3
3,329,878	+				-1.5
3,329,878	+				-0.4
3,329,878	+				-0.1
3,329,878	+				-2.7
3,329,878	+				-2.9
3,329,879	-				-0.5
3,329,879	-				-1.3
3,329,880	+				-1.9
3,329,880	+				-0.4
3,329,880	+				+0.8
3,329,880	+				-0.4
3,329,880	+				-1.2
3,329,880	+				-1.0
3,329,880	+				+0.3
3,329,880	+				+0.4
3,329,880	+				-1.0
3,329,880	+				-1.5
3,329,881	-				-0.6
3,329,881	-				-0.9
3,329,881	-				-1.4
3,329,881	-				-0.1
3,329,881	-				+1.6
3,329,881	-				-2.3
3,329,884	+				+0.8
3,329,884	+				-1.6
3,329,884	+				-0.0
3,329,884	+				-1.5
3,329,884	+				+1.8
3,329,884	+				-0.8
3,329,884	+				-0.6
3,329,884	+				-0.8
3,329,885	-				+2.0
3,329,885	-				+1.8
3,329,885	-				-0.9
3,329,885	-				-1.9
3,329,885	-				-3.1
3,329,885	-				-1.4
3,329,989	+		ABCV34_RS15735	0.17	+0.3
3,329,989	+		ABCV34_RS15735	0.17	-0.8
3,329,989	+		ABCV34_RS15735	0.17	-0.6
3,329,989	+		ABCV34_RS15735	0.17	-0.8
3,329,990	-		ABCV34_RS15735	0.17	-0.9
3,329,990	-		ABCV34_RS15735	0.17	-2.9
3,329,990	-		ABCV34_RS15735	0.17	-0.9
3,329,990	-		ABCV34_RS15735	0.17	-0.5
3,329,990	-		ABCV34_RS15735	0.17	-0.9
3,329,990	-		ABCV34_RS15735	0.17	-1.5
3,330,015	-		ABCV34_RS15735	0.23	-2.8
3,330,015	-		ABCV34_RS15735	0.23	-1.4
3,330,031	+		ABCV34_RS15735	0.27	-1.2
3,330,031	+		ABCV34_RS15735	0.27	-1.4
3,330,031	+		ABCV34_RS15735	0.27	-2.7
3,330,032	-		ABCV34_RS15735	0.27	-1.5
3,330,032	-		ABCV34_RS15735	0.27	-1.4
3,330,032	-		ABCV34_RS15735	0.27	-1.6
3,330,032	-		ABCV34_RS15735	0.27	-1.9
3,330,175	+		ABCV34_RS15735	0.61	-1.0
3,330,175	+		ABCV34_RS15735	0.61	-3.2
3,330,175	+		ABCV34_RS15735	0.61	-1.4
3,330,175	+		ABCV34_RS15735	0.61	-1.8
3,330,175	+		ABCV34_RS15735	0.61	-0.9
3,330,175	+		ABCV34_RS15735	0.61	+0.4
3,330,176	-		ABCV34_RS15735	0.61	-0.0
3,330,176	-		ABCV34_RS15735	0.61	-2.6
3,330,176	-		ABCV34_RS15735	0.61	-2.5
3,330,176	-		ABCV34_RS15735	0.61	+0.4
3,330,176	-		ABCV34_RS15735	0.61	-3.1
3,330,176	-		ABCV34_RS15735	0.61	-2.1
3,330,241	+		ABCV34_RS15735	0.76	-2.9
3,330,241	+		ABCV34_RS15735	0.76	-1.0
3,330,241	+		ABCV34_RS15735	0.76	-1.2
3,330,241	+		ABCV34_RS15735	0.76	-1.3
3,330,241	+		ABCV34_RS15735	0.76	-3.0
3,330,241	+		ABCV34_RS15735	0.76	-1.5
3,330,241	+		ABCV34_RS15735	0.76	+0.4
3,330,241	+		ABCV34_RS15735	0.76	-1.5
3,330,242	-		ABCV34_RS15735	0.76	-2.7
3,330,242	-		ABCV34_RS15735	0.76	-0.8
3,330,242	-		ABCV34_RS15735	0.76	-2.4
3,330,242	-		ABCV34_RS15735	0.76	-2.0
3,330,262	+		ABCV34_RS15735	0.81	-1.2
3,330,262	+		ABCV34_RS15735	0.81	-1.0
3,330,262	+		ABCV34_RS15735	0.81	-1.1
3,330,262	+		ABCV34_RS15735	0.81	-1.9
3,330,262	+		ABCV34_RS15735	0.81	-2.1
3,330,262	+		ABCV34_RS15735	0.81	-2.1
3,330,262	+		ABCV34_RS15735	0.81	-0.3
3,330,263	-		ABCV34_RS15735	0.81	+0.9
3,330,263	-		ABCV34_RS15735	0.81	-1.7
3,330,263	-		ABCV34_RS15735	0.81	-0.6
3,330,263	-		ABCV34_RS15735	0.81	+0.4
3,330,263	-		ABCV34_RS15735	0.81	+2.8
3,330,340	+				-1.3
3,330,340	+				-1.7
3,330,340	+				-0.7
3,330,340	+				-2.2
3,330,341	-				-0.2
3,330,377	-				-0.8
3,330,481	+				+0.3
3,330,481	+				-1.3
3,330,481	+				-2.2
3,330,481	+				+1.1
3,330,482	-				-0.4
3,330,482	-				-2.0
3,330,482	-				-1.4
3,330,482	-				-0.9
3,330,506	-				-0.7
3,330,557	+				+0.5
3,330,558	-				-0.9
3,330,606	+				-3.1
3,330,607	-				+0.7
3,330,609	+				-1.6
3,330,609	+				+0.5
3,330,609	+				-1.5
3,330,609	+				-2.6
3,330,609	+				-1.4
3,330,609	+				+0.4
3,330,609	+				-0.6
3,330,609	+				-0.6
3,330,610	-				-1.4
3,330,610	-				-1.7
3,330,610	-				-1.8
3,330,610	-				-1.4
3,330,610	-				+0.5
3,330,610	-				-0.8
3,330,610	-				-0.4
3,330,610	-				-1.6
3,330,610	-				+3.0
3,330,614	+				-1.9
3,330,614	+				-2.9
3,330,641	+				-1.7
3,330,641	+				-1.7
3,330,642	-				-1.3
3,330,642	-				-0.7
3,330,756	+				-2.1
3,330,757	-				+0.8