Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS13265

Experiment: Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
2,812,760	+		ABCV34_RS13255	0.21	-1.6
2,812,760	+		ABCV34_RS13255	0.21	-0.5
2,812,760	+		ABCV34_RS13255	0.21	-1.5
2,812,760	+		ABCV34_RS13255	0.21	-2.2
2,812,760	+		ABCV34_RS13255	0.21	+0.1
2,812,760	+		ABCV34_RS13255	0.21	-0.7
2,812,760	+		ABCV34_RS13255	0.21	-1.0
2,812,760	+		ABCV34_RS13255	0.21	-2.5
2,812,760	+		ABCV34_RS13255	0.21	-2.4
2,812,760	+		ABCV34_RS13255	0.21	+0.3
2,812,761	-		ABCV34_RS13255	0.21	-2.4
2,812,761	-		ABCV34_RS13255	0.21	-1.9
2,812,761	-		ABCV34_RS13255	0.21	-3.1
2,812,761	-		ABCV34_RS13255	0.21	-0.2
2,812,809	+		ABCV34_RS13255	0.27	-2.9
2,812,812	-		ABCV34_RS13255	0.27	-0.5
2,812,812	-		ABCV34_RS13255	0.27	+0.5
2,812,812	-		ABCV34_RS13255	0.27	-3.7
2,812,824	-		ABCV34_RS13255	0.29	+0.6
2,812,824	-		ABCV34_RS13255	0.29	-2.2
2,812,829	+		ABCV34_RS13255	0.29	-1.9
2,812,829	+		ABCV34_RS13255	0.29	-0.4
2,812,830	-		ABCV34_RS13255	0.29	-0.5
2,812,830	-		ABCV34_RS13255	0.29	-2.0
2,812,830	-		ABCV34_RS13255	0.29	-0.1
2,812,851	+		ABCV34_RS13255	0.32	+0.0
2,812,851	+		ABCV34_RS13255	0.32	+0.1
2,812,851	+		ABCV34_RS13255	0.32	-2.2
2,812,852	-		ABCV34_RS13255	0.32	-0.3
2,812,965	+		ABCV34_RS13255	0.45	-1.7
2,812,965	+		ABCV34_RS13255	0.45	-2.7
2,812,965	+		ABCV34_RS13255	0.45	-0.8
2,812,965	+		ABCV34_RS13255	0.45	-1.7
2,812,966	-		ABCV34_RS13255	0.45	+0.4
2,812,966	-		ABCV34_RS13255	0.45	-3.0
2,812,966	-		ABCV34_RS13255	0.45	-3.1
2,813,117	+		ABCV34_RS13255	0.62	-1.9
2,813,117	+		ABCV34_RS13255	0.62	-1.4
2,813,118	-		ABCV34_RS13255	0.62	-0.3
2,813,118	-		ABCV34_RS13255	0.62	-0.6
2,813,118	-		ABCV34_RS13255	0.62	-0.4
2,813,118	-		ABCV34_RS13255	0.62	-2.0
2,813,118	-		ABCV34_RS13255	0.62	-2.2
2,813,315	+		ABCV34_RS13255	0.85	-2.2
2,813,316	-		ABCV34_RS13255	0.85	-2.0
2,813,402	+				-3.6
2,813,402	+				-2.7
2,813,402	+				-1.6
2,813,402	+				+0.7
2,813,402	+				-1.4
2,813,403	-				-0.5
2,813,403	-				-0.5
2,813,403	-				-1.5
2,813,403	-				-2.4
2,813,403	-				-0.8
2,813,403	-				-0.8
2,813,405	+				-0.1
2,813,405	+				+0.9
2,813,405	+				-1.1
2,813,405	+				+0.1
2,813,405	+				-0.0
2,813,405	+				-1.2
2,813,405	+				-1.4
2,813,405	+				-0.2
2,813,405	+				-0.9
2,813,405	+				-2.2
2,813,405	+				-0.8
2,813,405	+				-3.3
2,813,406	-				-1.6
2,813,406	-				-0.9
2,813,406	-				-0.3
2,813,406	-				+0.6
2,813,406	-				-0.9
2,813,406	-				-0.8
2,813,406	-				+1.7
2,813,406	-				-1.3
2,813,406	-				-2.5
2,813,406	-				-0.8
2,813,406	-				-2.1
2,813,406	-				-2.0
2,813,406	-				-1.6
2,813,408	+				-0.8
2,813,408	+				-0.6
2,813,408	+				-0.2
2,813,408	+				+0.7
2,813,408	+				-0.4
2,813,409	-				-1.0
2,813,428	+				+0.5
2,813,428	+				-2.1
2,813,428	+				-0.7
2,813,428	+				-1.3
2,813,428	+				-1.0
2,813,428	+				-3.6
2,813,428	+				-2.8
2,813,428	+				+3.2
2,813,428	+				-2.1
2,813,428	+				+0.3
2,813,429	-				-1.7
2,813,429	-				-1.2
2,813,429	-				-0.1
2,813,429	-				-0.0
2,813,429	-				-1.3
2,813,429	-				-0.7
2,813,429	-				-0.6
2,813,429	-				-1.5
2,813,429	-				+1.8
2,813,429	-				-0.2
2,813,429	-				-1.1
2,813,467	+				+0.0
2,813,468	-				-1.0
2,813,468	-				+1.6
2,813,505	+		ABCV34_RS13260	0.20	-1.4
2,813,506	-		ABCV34_RS13260	0.21	-1.7
2,813,506	-		ABCV34_RS13260	0.21	-0.2
2,813,506	-		ABCV34_RS13260	0.21	-2.6
2,813,506	-		ABCV34_RS13260	0.21	-0.2
2,813,506	-		ABCV34_RS13260	0.21	-2.1
2,813,506	-		ABCV34_RS13260	0.21	-0.3
2,813,514	+		ABCV34_RS13260	0.25	-1.8
2,813,670	+		ABCV34_RS13265	0.14	+0.3
2,813,670	+		ABCV34_RS13265	0.14	-0.9
2,813,670	+		ABCV34_RS13265	0.14	+0.7
2,813,801	-				-1.5
2,813,929	+				-1.7
2,813,929	+				-0.2
2,813,929	+				+1.8
2,813,929	+				+0.2
2,813,929	+				-0.7
2,813,929	+				-1.5
2,813,929	+				+0.8
2,813,929	+				+0.4
2,813,929	+				-1.7
2,813,929	+				+0.0
2,813,929	+				-0.2
2,813,929	+				-2.1
2,813,929	+				-1.6
2,813,929	+				+0.2
2,813,930	-				-1.3
2,813,930	-				+1.7
2,813,930	-				+0.4
2,813,930	-				-0.6
2,813,930	-				-0.9
2,813,930	-				-1.5
2,814,010	+		ABCV34_RS13270	0.14	-0.9
2,814,010	+		ABCV34_RS13270	0.14	-0.9
2,814,011	-		ABCV34_RS13270	0.14	-0.9
2,814,011	-		ABCV34_RS13270	0.14	+0.2
2,814,011	-		ABCV34_RS13270	0.14	-0.1
2,814,011	-		ABCV34_RS13270	0.14	-0.0
2,814,124	+		ABCV34_RS13270	0.21	-1.2
2,814,124	+		ABCV34_RS13270	0.21	-1.2
2,814,124	+		ABCV34_RS13270	0.21	+0.2
2,814,124	+		ABCV34_RS13270	0.21	-3.2
2,814,124	+		ABCV34_RS13270	0.21	-1.3
2,814,124	+		ABCV34_RS13270	0.21	-0.1
2,814,124	+		ABCV34_RS13270	0.21	-0.7
2,814,124	+		ABCV34_RS13270	0.21	-0.8
2,814,125	-		ABCV34_RS13270	0.21	-1.1
2,814,125	-		ABCV34_RS13270	0.21	-0.0
2,814,125	-		ABCV34_RS13270	0.21	-1.5
2,814,125	-		ABCV34_RS13270	0.21	+0.8
2,814,125	-		ABCV34_RS13270	0.21	-1.2
2,814,125	-		ABCV34_RS13270	0.21	+0.7
2,814,125	-		ABCV34_RS13270	0.21	-0.7
2,814,125	-		ABCV34_RS13270	0.21	+1.6
2,814,125	-		ABCV34_RS13270	0.21	-1.3
2,814,128	+		ABCV34_RS13270	0.21	-1.7
2,814,128	+		ABCV34_RS13270	0.21	-1.8
2,814,128	+		ABCV34_RS13270	0.21	-2.5
2,814,128	+		ABCV34_RS13270	0.21	-1.8
2,814,128	+		ABCV34_RS13270	0.21	-1.2
2,814,128	+		ABCV34_RS13270	0.21	-0.2
2,814,128	+		ABCV34_RS13270	0.21	-0.4
2,814,128	+		ABCV34_RS13270	0.21	+0.5
2,814,129	-		ABCV34_RS13270	0.21	+0.2
2,814,129	-		ABCV34_RS13270	0.21	-0.5
2,814,129	-		ABCV34_RS13270	0.21	+0.3
2,814,129	-		ABCV34_RS13270	0.21	-1.5
2,814,129	-		ABCV34_RS13270	0.21	-3.4
2,814,129	-		ABCV34_RS13270	0.21	+0.6
2,814,129	-		ABCV34_RS13270	0.21	-1.1
2,814,129	-		ABCV34_RS13270	0.21	-2.8
2,814,129	-		ABCV34_RS13270	0.21	-2.2
2,814,129	-		ABCV34_RS13270	0.21	-2.2
2,814,129	-		ABCV34_RS13270	0.21	-0.5
2,814,129	-		ABCV34_RS13270	0.21	-1.9
2,814,155	-		ABCV34_RS13270	0.23	-2.9
2,814,155	-		ABCV34_RS13270	0.23	+0.6
2,814,155	-		ABCV34_RS13270	0.23	-0.2
2,814,157	+		ABCV34_RS13270	0.23	-2.3
2,814,157	+		ABCV34_RS13270	0.23	+0.1
2,814,157	+		ABCV34_RS13270	0.23	-2.7
2,814,157	+		ABCV34_RS13270	0.23	-0.2
2,814,157	+		ABCV34_RS13270	0.23	-2.8
2,814,157	+		ABCV34_RS13270	0.23	-1.7
2,814,157	+		ABCV34_RS13270	0.23	-0.6
2,814,157	+		ABCV34_RS13270	0.23	+0.4
2,814,157	+		ABCV34_RS13270	0.23	-1.0
2,814,157	+		ABCV34_RS13270	0.23	-0.2
2,814,157	+		ABCV34_RS13270	0.23	-0.6
2,814,157	+		ABCV34_RS13270	0.23	-1.7
2,814,158	-		ABCV34_RS13270	0.23	-1.5
2,814,158	-		ABCV34_RS13270	0.23	+1.3
2,814,158	-		ABCV34_RS13270	0.23	-1.7
2,814,158	-		ABCV34_RS13270	0.23	-0.8
2,814,158	-		ABCV34_RS13270	0.23	-0.7
2,814,158	-		ABCV34_RS13270	0.23	-4.0
2,814,158	-		ABCV34_RS13270	0.23	+0.2
2,814,158	-		ABCV34_RS13270	0.23	-2.4
2,814,202	+		ABCV34_RS13270	0.26	-1.0
2,814,203	-		ABCV34_RS13270	0.26	-0.3
2,814,223	+		ABCV34_RS13270	0.27	-2.9
2,814,223	+		ABCV34_RS13270	0.27	-0.5
2,814,223	+		ABCV34_RS13270	0.27	-1.5
2,814,223	+		ABCV34_RS13270	0.27	+0.1
2,814,223	+		ABCV34_RS13270	0.27	-0.1
2,814,223	+		ABCV34_RS13270	0.27	-0.3
2,814,223	+		ABCV34_RS13270	0.27	-0.7
2,814,223	+		ABCV34_RS13270	0.27	-0.8
2,814,223	+		ABCV34_RS13270	0.27	-2.9
2,814,224	-		ABCV34_RS13270	0.27	+0.7
2,814,224	-		ABCV34_RS13270	0.27	-1.5
2,814,224	-		ABCV34_RS13270	0.27	+0.5
2,814,224	-		ABCV34_RS13270	0.27	+0.8
2,814,224	-		ABCV34_RS13270	0.27	-1.4
2,814,224	-		ABCV34_RS13270	0.27	+1.1
2,814,224	-		ABCV34_RS13270	0.27	-1.6
2,814,224	-		ABCV34_RS13270	0.27	-2.2
2,814,224	-		ABCV34_RS13270	0.27	-1.1
2,814,224	-		ABCV34_RS13270	0.27	-0.7
2,814,226	+		ABCV34_RS13270	0.27	-2.1
2,814,226	+		ABCV34_RS13270	0.27	+1.4
2,814,226	+		ABCV34_RS13270	0.27	+2.8
2,814,226	+		ABCV34_RS13270	0.27	-2.9
2,814,226	+		ABCV34_RS13270	0.27	-2.7
2,814,226	+		ABCV34_RS13270	0.27	-1.1
2,814,226	+		ABCV34_RS13270	0.27	-0.3
2,814,226	+		ABCV34_RS13270	0.27	-3.0
2,814,227	-		ABCV34_RS13270	0.27	-1.9
2,814,227	-		ABCV34_RS13270	0.27	-0.0
2,814,227	-		ABCV34_RS13270	0.27	-1.4
2,814,227	-		ABCV34_RS13270	0.27	+0.0
2,814,227	-		ABCV34_RS13270	0.27	+0.8
2,814,227	-		ABCV34_RS13270	0.27	-2.3
2,814,227	-		ABCV34_RS13270	0.27	+0.2
2,814,227	-		ABCV34_RS13270	0.27	-0.6
2,814,227	-		ABCV34_RS13270	0.27	-1.9
2,814,418	+		ABCV34_RS13270	0.39	+0.6
2,814,418	+		ABCV34_RS13270	0.39	-1.8
2,814,418	+		ABCV34_RS13270	0.39	+0.3
2,814,418	+		ABCV34_RS13270	0.39	+2.4
2,814,418	+		ABCV34_RS13270	0.39	+1.3
2,814,418	+		ABCV34_RS13270	0.39	-0.1
2,814,418	+		ABCV34_RS13270	0.39	-0.8
2,814,418	+		ABCV34_RS13270	0.39	-0.0
2,814,419	-		ABCV34_RS13270	0.39	+1.7
2,814,419	-		ABCV34_RS13270	0.39	+0.4
2,814,419	-		ABCV34_RS13270	0.39	-1.4
2,814,419	-		ABCV34_RS13270	0.39	+0.3
2,814,419	-		ABCV34_RS13270	0.39	-2.2
2,814,419	-		ABCV34_RS13270	0.39	-1.1
2,814,514	+		ABCV34_RS13270	0.45	+1.2
2,814,514	+		ABCV34_RS13270	0.45	-3.2
2,814,515	-		ABCV34_RS13270	0.45	-1.7
2,814,515	-		ABCV34_RS13270	0.45	-0.9
2,814,515	-		ABCV34_RS13270	0.45	-2.1
2,814,515	-		ABCV34_RS13270	0.45	-2.8
2,814,515	-		ABCV34_RS13270	0.45	-1.3
2,814,515	-		ABCV34_RS13270	0.45	+1.0
2,814,515	-		ABCV34_RS13270	0.45	-3.0
2,814,515	-		ABCV34_RS13270	0.45	+0.5
2,814,530	-		ABCV34_RS13270	0.46	-2.2
2,814,604	+		ABCV34_RS13270	0.51	+0.4
2,814,604	+		ABCV34_RS13270	0.51	-1.1
2,814,604	+		ABCV34_RS13270	0.51	-0.9
2,814,604	+		ABCV34_RS13270	0.51	-1.6
2,814,604	+		ABCV34_RS13270	0.51	-0.1
2,814,604	+		ABCV34_RS13270	0.51	-0.2
2,814,604	+		ABCV34_RS13270	0.51	-1.5
2,814,605	-		ABCV34_RS13270	0.51	-0.4
2,814,605	-		ABCV34_RS13270	0.51	-1.1
2,814,605	-		ABCV34_RS13270	0.51	+1.5
2,814,605	-		ABCV34_RS13270	0.51	+1.4
2,814,605	-		ABCV34_RS13270	0.51	-3.0
2,814,605	-		ABCV34_RS13270	0.51	-0.1
2,814,605	-		ABCV34_RS13270	0.51	-0.3
2,814,605	-		ABCV34_RS13270	0.51	-0.3
2,814,605	-		ABCV34_RS13270	0.51	-0.8
2,814,605	-		ABCV34_RS13270	0.51	-0.9
2,814,605	-		ABCV34_RS13270	0.51	-0.3
2,814,757	+		ABCV34_RS13270	0.60	-2.3
2,814,758	-		ABCV34_RS13270	0.60	-1.1