Experiment: Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS02940 and ABCV34_RS02945 are separated by 181 nucleotides ABCV34_RS02945 and ABCV34_RS02950 are separated by 143 nucleotides ABCV34_RS02950 and ABCV34_RS02955 are separated by 122 nucleotides ABCV34_RS02955 and ABCV34_RS02960 are separated by 78 nucleotides
ABCV34_RS02940: ABCV34_RS02940 - c-type cytochrome, at 654,381 to 655,031
_RS02940
ABCV34_RS02945: ABCV34_RS02945 - C40 family peptidase, at 655,213 to 655,695
_RS02945
ABCV34_RS02950: ABCV34_RS02950 - Spy/CpxP family protein refolding chaperone, at 655,839 to 656,330
_RS02950
ABCV34_RS02955: ABCV34_RS02955 - YggS family pyridoxal phosphate-dependent enzyme, at 656,453 to 657,241
_RS02955
ABCV34_RS02960: ABCV34_RS02960 - exodeoxyribonuclease V subunit gamma, at 657,320 to 660,853
_RS02960
Position (kb) 655
656
657 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 654.865 kb on + strand, within ABCV34_RS02940 at 654.865 kb on + strand, within ABCV34_RS02940 at 654.865 kb on + strand, within ABCV34_RS02940 at 654.890 kb on - strand, within ABCV34_RS02940 at 654.973 kb on + strand at 654.973 kb on + strand at 654.973 kb on + strand at 654.973 kb on + strand at 654.973 kb on + strand at 654.973 kb on + strand at 654.973 kb on + strand at 654.973 kb on + strand at 654.973 kb on + strand at 654.974 kb on - strand at 654.974 kb on - strand at 654.974 kb on - strand at 654.974 kb on - strand at 654.974 kb on - strand at 654.974 kb on - strand at 654.974 kb on - strand at 654.974 kb on - strand at 655.127 kb on + strand at 655.127 kb on + strand at 655.127 kb on + strand at 655.128 kb on - strand at 655.128 kb on - strand at 655.128 kb on - strand at 655.128 kb on - strand at 655.129 kb on + strand at 655.130 kb on - strand at 655.130 kb on - strand at 655.130 kb on - strand at 655.130 kb on - strand at 655.130 kb on - strand at 655.140 kb on + strand at 655.140 kb on + strand at 655.140 kb on + strand at 655.141 kb on - strand at 655.141 kb on - strand at 655.142 kb on + strand at 655.142 kb on + strand at 655.142 kb on + strand at 655.142 kb on + strand at 655.142 kb on + strand at 655.142 kb on + strand at 655.142 kb on + strand at 655.142 kb on + strand at 655.142 kb on + strand at 655.143 kb on - strand at 655.143 kb on - strand at 655.143 kb on - strand at 655.143 kb on - strand at 655.143 kb on - strand at 655.143 kb on - strand at 655.143 kb on - strand at 655.143 kb on - strand at 655.143 kb on - strand at 655.143 kb on - strand at 655.143 kb on - strand at 655.143 kb on - strand at 655.143 kb on - strand at 655.143 kb on - strand at 655.152 kb on + strand at 655.152 kb on + strand at 655.152 kb on + strand at 655.153 kb on - strand at 655.157 kb on + strand at 655.161 kb on + strand at 655.161 kb on + strand at 655.161 kb on + strand at 655.162 kb on - strand at 655.162 kb on - strand at 655.162 kb on - strand at 655.162 kb on - strand at 655.162 kb on - strand at 655.164 kb on + strand at 655.164 kb on + strand at 655.165 kb on - strand at 655.165 kb on - strand at 655.165 kb on - strand at 655.169 kb on + strand at 655.169 kb on + strand at 655.170 kb on - strand at 655.366 kb on + strand, within ABCV34_RS02945 at 655.423 kb on + strand, within ABCV34_RS02945 at 655.423 kb on + strand, within ABCV34_RS02945 at 655.423 kb on + strand, within ABCV34_RS02945 at 655.423 kb on + strand, within ABCV34_RS02945 at 655.423 kb on + strand, within ABCV34_RS02945 at 655.423 kb on + strand, within ABCV34_RS02945 at 655.423 kb on + strand, within ABCV34_RS02945 at 655.423 kb on + strand, within ABCV34_RS02945 at 655.423 kb on + strand, within ABCV34_RS02945 at 655.423 kb on + strand, within ABCV34_RS02945 at 655.423 kb on + strand, within ABCV34_RS02945 at 655.423 kb on + strand, within ABCV34_RS02945 at 655.423 kb on + strand, within ABCV34_RS02945 at 655.423 kb on + strand, within ABCV34_RS02945 at 655.423 kb on + strand, within ABCV34_RS02945 at 655.423 kb on + strand, within ABCV34_RS02945 at 655.423 kb on + strand, within ABCV34_RS02945 at 655.424 kb on - strand, within ABCV34_RS02945 at 655.424 kb on - strand, within ABCV34_RS02945 at 655.424 kb on - strand, within ABCV34_RS02945 at 655.424 kb on - strand, within ABCV34_RS02945 at 655.424 kb on - strand, within ABCV34_RS02945 at 655.424 kb on - strand, within ABCV34_RS02945 at 655.424 kb on - strand, within ABCV34_RS02945 at 655.424 kb on - strand, within ABCV34_RS02945 at 655.424 kb on - strand, within ABCV34_RS02945 at 655.424 kb on - strand, within ABCV34_RS02945 at 655.424 kb on - strand, within ABCV34_RS02945 at 655.424 kb on - strand, within ABCV34_RS02945 at 655.424 kb on - strand, within ABCV34_RS02945 at 655.424 kb on - strand, within ABCV34_RS02945 at 655.424 kb on - strand, within ABCV34_RS02945 at 655.424 kb on - strand, within ABCV34_RS02945 at 655.464 kb on + strand, within ABCV34_RS02945 at 655.464 kb on + strand, within ABCV34_RS02945 at 655.465 kb on - strand, within ABCV34_RS02945 at 655.465 kb on - strand, within ABCV34_RS02945 at 655.573 kb on + strand, within ABCV34_RS02945 at 655.573 kb on + strand, within ABCV34_RS02945 at 655.573 kb on + strand, within ABCV34_RS02945 at 655.573 kb on + strand, within ABCV34_RS02945 at 655.573 kb on + strand, within ABCV34_RS02945 at 655.573 kb on + strand, within ABCV34_RS02945 at 655.573 kb on + strand, within ABCV34_RS02945 at 655.573 kb on + strand, within ABCV34_RS02945 at 655.573 kb on + strand, within ABCV34_RS02945 at 655.573 kb on + strand, within ABCV34_RS02945 at 655.574 kb on - strand, within ABCV34_RS02945 at 655.574 kb on - strand, within ABCV34_RS02945 at 655.574 kb on - strand, within ABCV34_RS02945 at 655.574 kb on - strand, within ABCV34_RS02945 at 655.574 kb on - strand, within ABCV34_RS02945 at 655.574 kb on - strand, within ABCV34_RS02945 at 655.574 kb on - strand, within ABCV34_RS02945 at 655.622 kb on + strand, within ABCV34_RS02945 at 655.622 kb on + strand, within ABCV34_RS02945 at 655.622 kb on + strand, within ABCV34_RS02945 at 655.622 kb on + strand, within ABCV34_RS02945 at 655.622 kb on + strand, within ABCV34_RS02945 at 655.622 kb on + strand, within ABCV34_RS02945 at 655.622 kb on + strand, within ABCV34_RS02945 at 655.622 kb on + strand, within ABCV34_RS02945 at 655.623 kb on - strand, within ABCV34_RS02945 at 655.623 kb on - strand, within ABCV34_RS02945 at 655.623 kb on - strand, within ABCV34_RS02945 at 655.623 kb on - strand, within ABCV34_RS02945 at 655.623 kb on - strand, within ABCV34_RS02945 at 655.623 kb on - strand, within ABCV34_RS02945 at 655.623 kb on - strand, within ABCV34_RS02945 at 655.623 kb on - strand, within ABCV34_RS02945 at 655.623 kb on - strand, within ABCV34_RS02945 at 655.626 kb on + strand, within ABCV34_RS02945 at 655.626 kb on + strand, within ABCV34_RS02945 at 655.627 kb on - strand, within ABCV34_RS02945 at 655.627 kb on - strand, within ABCV34_RS02945 at 655.648 kb on + strand at 655.649 kb on - strand at 655.651 kb on + strand at 655.651 kb on + strand at 655.652 kb on - strand at 656.092 kb on + strand, within ABCV34_RS02950 at 656.092 kb on + strand, within ABCV34_RS02950 at 656.093 kb on - strand, within ABCV34_RS02950 at 656.093 kb on - strand, within ABCV34_RS02950 at 656.093 kb on - strand, within ABCV34_RS02950 at 656.387 kb on - strand at 656.442 kb on + strand at 656.442 kb on + strand at 656.442 kb on + strand at 656.442 kb on + strand at 656.442 kb on + strand at 656.443 kb on - strand at 656.443 kb on - strand at 656.443 kb on - strand at 656.484 kb on + strand at 656.484 kb on + strand at 656.484 kb on + strand at 656.485 kb on - strand at 656.487 kb on + strand at 656.487 kb on + strand at 656.487 kb on + strand at 656.487 kb on + strand at 656.487 kb on + strand at 656.487 kb on + strand at 656.487 kb on + strand at 656.487 kb on + strand at 656.487 kb on + strand at 656.487 kb on + strand at 656.487 kb on + strand at 656.487 kb on + strand at 656.487 kb on + strand at 656.487 kb on + strand at 656.487 kb on + strand at 656.487 kb on + strand at 656.487 kb on + strand at 656.487 kb on + strand at 656.487 kb on + strand at 656.487 kb on + strand at 656.487 kb on + strand at 656.488 kb on - strand at 656.488 kb on - strand at 656.488 kb on - strand at 656.488 kb on - strand at 656.488 kb on - strand at 656.488 kb on - strand at 656.488 kb on - strand at 656.488 kb on - strand at 656.488 kb on - strand at 656.488 kb on - strand at 656.488 kb on - strand at 656.488 kb on - strand at 656.488 kb on - strand at 656.488 kb on - strand at 656.488 kb on - strand at 656.737 kb on - strand, within ABCV34_RS02955 at 656.852 kb on + strand, within ABCV34_RS02955 at 656.852 kb on + strand, within ABCV34_RS02955 at 656.853 kb on - strand, within ABCV34_RS02955 at 656.853 kb on - strand, within ABCV34_RS02955 at 657.007 kb on - strand, within ABCV34_RS02955 at 657.007 kb on - strand, within ABCV34_RS02955 at 657.054 kb on + strand, within ABCV34_RS02955 at 657.055 kb on - strand, within ABCV34_RS02955 at 657.107 kb on + strand, within ABCV34_RS02955 at 657.107 kb on + strand, within ABCV34_RS02955 at 657.107 kb on + strand, within ABCV34_RS02955 at 657.107 kb on + strand, within ABCV34_RS02955 at 657.107 kb on + strand, within ABCV34_RS02955 at 657.107 kb on + strand, within ABCV34_RS02955 at 657.107 kb on + strand, within ABCV34_RS02955 at 657.107 kb on + strand, within ABCV34_RS02955 at 657.107 kb on + strand, within ABCV34_RS02955 at 657.107 kb on + strand, within ABCV34_RS02955 at 657.107 kb on + strand, within ABCV34_RS02955 at 657.107 kb on + strand, within ABCV34_RS02955 at 657.107 kb on + strand, within ABCV34_RS02955 at 657.108 kb on - strand, within ABCV34_RS02955 at 657.108 kb on - strand, within ABCV34_RS02955 at 657.108 kb on - strand, within ABCV34_RS02955 at 657.108 kb on - strand, within ABCV34_RS02955 at 657.108 kb on - strand, within ABCV34_RS02955 at 657.108 kb on - strand, within ABCV34_RS02955 at 657.108 kb on - strand, within ABCV34_RS02955 at 657.108 kb on - strand, within ABCV34_RS02955 at 657.265 kb on + strand at 657.265 kb on + strand at 657.265 kb on + strand at 657.266 kb on - strand at 657.276 kb on + strand at 657.276 kb on + strand at 657.276 kb on + strand at 657.276 kb on + strand at 657.276 kb on + strand at 657.277 kb on - strand at 657.277 kb on - strand at 657.277 kb on - strand at 657.277 kb on - strand at 657.277 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate remove 654,865 + ABCV34_RS02940 0.74 -2.1 654,865 + ABCV34_RS02940 0.74 -3.5 654,865 + ABCV34_RS02940 0.74 -2.2 654,890 - ABCV34_RS02940 0.78 -0.7 654,973 + -0.2 654,973 + -1.8 654,973 + -2.8 654,973 + -1.7 654,973 + -2.2 654,973 + -1.4 654,973 + -0.7 654,973 + -1.2 654,973 + -1.4 654,974 - -2.0 654,974 - -1.7 654,974 - -0.8 654,974 - -0.5 654,974 - +0.3 654,974 - -2.2 654,974 - -0.3 654,974 - +2.1 655,127 + +1.3 655,127 + -0.2 655,127 + -0.2 655,128 - -1.4 655,128 - -0.9 655,128 - -0.1 655,128 - -0.9 655,129 + -2.2 655,130 - -0.7 655,130 - +0.6 655,130 - -1.7 655,130 - -0.8 655,130 - -1.9 655,140 + -0.2 655,140 + -3.0 655,140 + -1.3 655,141 - +0.2 655,141 - -0.5 655,142 + -0.4 655,142 + -0.4 655,142 + +0.7 655,142 + -1.8 655,142 + -3.0 655,142 + -0.5 655,142 + +0.1 655,142 + -1.3 655,142 + +0.0 655,143 - -0.3 655,143 - -4.3 655,143 - -0.9 655,143 - +0.2 655,143 - +0.0 655,143 - -1.8 655,143 - +0.0 655,143 - -0.0 655,143 - -0.6 655,143 - -0.4 655,143 - -1.6 655,143 - +0.3 655,143 - -2.9 655,143 - -1.4 655,152 + -0.4 655,152 + -3.0 655,152 + +1.1 655,153 - -1.1 655,157 + +1.1 655,161 + -0.7 655,161 + -2.5 655,161 + -1.3 655,162 - -2.6 655,162 - +1.8 655,162 - -1.8 655,162 - -0.1 655,162 - +2.1 655,164 + -1.9 655,164 + -0.2 655,165 - -0.7 655,165 - -0.8 655,165 - -0.1 655,169 + +0.6 655,169 + -2.3 655,170 - -2.1 655,366 + ABCV34_RS02945 0.32 -0.5 655,423 + ABCV34_RS02945 0.43 -1.6 655,423 + ABCV34_RS02945 0.43 -2.7 655,423 + ABCV34_RS02945 0.43 +0.2 655,423 + ABCV34_RS02945 0.43 +0.1 655,423 + ABCV34_RS02945 0.43 -1.8 655,423 + ABCV34_RS02945 0.43 -2.8 655,423 + ABCV34_RS02945 0.43 +0.1 655,423 + ABCV34_RS02945 0.43 -0.5 655,423 + ABCV34_RS02945 0.43 +0.7 655,423 + ABCV34_RS02945 0.43 +0.4 655,423 + ABCV34_RS02945 0.43 +2.6 655,423 + ABCV34_RS02945 0.43 +2.1 655,423 + ABCV34_RS02945 0.43 -2.5 655,423 + ABCV34_RS02945 0.43 +0.7 655,423 + ABCV34_RS02945 0.43 -2.4 655,423 + ABCV34_RS02945 0.43 -0.2 655,423 + ABCV34_RS02945 0.43 -1.5 655,424 - ABCV34_RS02945 0.44 -0.8 655,424 - ABCV34_RS02945 0.44 +1.9 655,424 - ABCV34_RS02945 0.44 -0.5 655,424 - ABCV34_RS02945 0.44 -2.8 655,424 - ABCV34_RS02945 0.44 -1.4 655,424 - ABCV34_RS02945 0.44 -0.7 655,424 - ABCV34_RS02945 0.44 -1.1 655,424 - ABCV34_RS02945 0.44 -1.7 655,424 - ABCV34_RS02945 0.44 -1.5 655,424 - ABCV34_RS02945 0.44 +0.5 655,424 - ABCV34_RS02945 0.44 +0.4 655,424 - ABCV34_RS02945 0.44 -2.3 655,424 - ABCV34_RS02945 0.44 +0.4 655,424 - ABCV34_RS02945 0.44 +0.6 655,424 - ABCV34_RS02945 0.44 -1.4 655,424 - ABCV34_RS02945 0.44 -1.1 655,464 + ABCV34_RS02945 0.52 -2.2 655,464 + ABCV34_RS02945 0.52 -3.3 655,465 - ABCV34_RS02945 0.52 -0.6 655,465 - ABCV34_RS02945 0.52 -0.9 655,573 + ABCV34_RS02945 0.75 -0.2 655,573 + ABCV34_RS02945 0.75 -0.3 655,573 + ABCV34_RS02945 0.75 +0.8 655,573 + ABCV34_RS02945 0.75 +1.2 655,573 + ABCV34_RS02945 0.75 -1.5 655,573 + ABCV34_RS02945 0.75 +1.1 655,573 + ABCV34_RS02945 0.75 -1.6 655,573 + ABCV34_RS02945 0.75 +3.3 655,573 + ABCV34_RS02945 0.75 -1.5 655,573 + ABCV34_RS02945 0.75 -0.1 655,574 - ABCV34_RS02945 0.75 -1.5 655,574 - ABCV34_RS02945 0.75 -1.7 655,574 - ABCV34_RS02945 0.75 -0.3 655,574 - ABCV34_RS02945 0.75 -2.9 655,574 - ABCV34_RS02945 0.75 -2.4 655,574 - ABCV34_RS02945 0.75 -1.4 655,574 - ABCV34_RS02945 0.75 -0.2 655,622 + ABCV34_RS02945 0.85 -1.0 655,622 + ABCV34_RS02945 0.85 -0.6 655,622 + ABCV34_RS02945 0.85 -1.1 655,622 + ABCV34_RS02945 0.85 -0.0 655,622 + ABCV34_RS02945 0.85 -2.9 655,622 + ABCV34_RS02945 0.85 -1.6 655,622 + ABCV34_RS02945 0.85 -1.2 655,622 + ABCV34_RS02945 0.85 +0.5 655,623 - ABCV34_RS02945 0.85 +0.2 655,623 - ABCV34_RS02945 0.85 +0.1 655,623 - ABCV34_RS02945 0.85 -0.1 655,623 - ABCV34_RS02945 0.85 -2.1 655,623 - ABCV34_RS02945 0.85 -4.0 655,623 - ABCV34_RS02945 0.85 -1.6 655,623 - ABCV34_RS02945 0.85 -3.3 655,623 - ABCV34_RS02945 0.85 -1.4 655,623 - ABCV34_RS02945 0.85 -1.6 655,626 + ABCV34_RS02945 0.86 -1.2 655,626 + ABCV34_RS02945 0.86 -1.5 655,627 - ABCV34_RS02945 0.86 +0.1 655,627 - ABCV34_RS02945 0.86 +0.7 655,648 + -2.1 655,649 - -1.0 655,651 + +0.4 655,651 + -2.4 655,652 - -0.2 656,092 + ABCV34_RS02950 0.51 -0.9 656,092 + ABCV34_RS02950 0.51 -0.2 656,093 - ABCV34_RS02950 0.52 -1.2 656,093 - ABCV34_RS02950 0.52 -0.3 656,093 - ABCV34_RS02950 0.52 +0.4 656,387 - -2.4 656,442 + -3.7 656,442 + +0.5 656,442 + -0.6 656,442 + -1.8 656,442 + -1.1 656,443 - +0.6 656,443 - -0.6 656,443 - -2.3 656,484 + -0.5 656,484 + -0.2 656,484 + -0.1 656,485 - -0.7 656,487 + -0.3 656,487 + -1.7 656,487 + -2.3 656,487 + +0.0 656,487 + -1.5 656,487 + +1.0 656,487 + -0.0 656,487 + -1.4 656,487 + -0.3 656,487 + -1.1 656,487 + -1.9 656,487 + -1.2 656,487 + -0.4 656,487 + -1.6 656,487 + +0.3 656,487 + -2.3 656,487 + -1.4 656,487 + +0.9 656,487 + -1.8 656,487 + +0.9 656,487 + +0.4 656,488 - +0.1 656,488 - -0.8 656,488 - -0.5 656,488 - -1.5 656,488 - -0.5 656,488 - -2.2 656,488 - -1.4 656,488 - -0.1 656,488 - -0.2 656,488 - +1.0 656,488 - -1.4 656,488 - -1.2 656,488 - +1.1 656,488 - +0.1 656,488 - -1.0 656,737 - ABCV34_RS02955 0.36 +1.5 656,852 + ABCV34_RS02955 0.51 -0.2 656,852 + ABCV34_RS02955 0.51 -0.5 656,853 - ABCV34_RS02955 0.51 +1.2 656,853 - ABCV34_RS02955 0.51 -0.1 657,007 - ABCV34_RS02955 0.70 -2.1 657,007 - ABCV34_RS02955 0.70 -1.3 657,054 + ABCV34_RS02955 0.76 -0.1 657,055 - ABCV34_RS02955 0.76 -0.7 657,107 + ABCV34_RS02955 0.83 -1.6 657,107 + ABCV34_RS02955 0.83 -1.6 657,107 + ABCV34_RS02955 0.83 -2.7 657,107 + ABCV34_RS02955 0.83 -3.0 657,107 + ABCV34_RS02955 0.83 -1.5 657,107 + ABCV34_RS02955 0.83 -0.6 657,107 + ABCV34_RS02955 0.83 -3.6 657,107 + ABCV34_RS02955 0.83 -1.4 657,107 + ABCV34_RS02955 0.83 -3.1 657,107 + ABCV34_RS02955 0.83 -4.3 657,107 + ABCV34_RS02955 0.83 +1.0 657,107 + ABCV34_RS02955 0.83 +1.1 657,107 + ABCV34_RS02955 0.83 -3.2 657,108 - ABCV34_RS02955 0.83 +1.3 657,108 - ABCV34_RS02955 0.83 -1.7 657,108 - ABCV34_RS02955 0.83 -0.2 657,108 - ABCV34_RS02955 0.83 -3.1 657,108 - ABCV34_RS02955 0.83 -1.4 657,108 - ABCV34_RS02955 0.83 -3.7 657,108 - ABCV34_RS02955 0.83 -3.1 657,108 - ABCV34_RS02955 0.83 -1.2 657,265 + -1.6 657,265 + -0.2 657,265 + -1.2 657,266 - -1.0 657,276 + +0.8 657,276 + -0.5 657,276 + +1.2 657,276 + -0.5 657,276 + -2.1 657,277 - +0.6 657,277 - -0.3 657,277 - -1.7 657,277 - +1.4 657,277 - -1.1
Or see this region's nucleotide sequence