Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS21020 and ABZR88_RS21025 are separated by 91 nucleotides ABZR88_RS21025 and ABZR88_RS21030 are separated by 88 nucleotides ABZR88_RS21030 and ABZR88_RS21035 are separated by 127 nucleotides
ABZR88_RS21020: ABZR88_RS21020 - hypothetical protein, at 5,085,041 to 5,085,655
_RS21020
ABZR88_RS21025: ABZR88_RS21025 - hypothetical protein, at 5,085,747 to 5,086,388
_RS21025
ABZR88_RS21030: ABZR88_RS21030 - YceH family protein, at 5,086,477 to 5,087,133
_RS21030
ABZR88_RS21035: ABZR88_RS21035 - hypothetical protein, at 5,087,261 to 5,088,211
_RS21035
Position (kb) 5086
5087
5088 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5085.500 kb on - strand, within ABZR88_RS21020 at 5085.662 kb on + strand at 5085.744 kb on + strand at 5085.834 kb on - strand, within ABZR88_RS21025 at 5085.912 kb on + strand, within ABZR88_RS21025 at 5085.966 kb on + strand, within ABZR88_RS21025 at 5086.010 kb on - strand, within ABZR88_RS21025 at 5086.162 kb on + strand, within ABZR88_RS21025 at 5086.231 kb on - strand, within ABZR88_RS21025 at 5086.269 kb on - strand, within ABZR88_RS21025 at 5086.311 kb on + strand, within ABZR88_RS21025 at 5086.312 kb on - strand, within ABZR88_RS21025 at 5086.456 kb on + strand at 5086.457 kb on - strand at 5086.467 kb on - strand at 5086.491 kb on + strand at 5086.492 kb on - strand at 5086.526 kb on + strand at 5086.766 kb on + strand, within ABZR88_RS21030 at 5086.782 kb on + strand, within ABZR88_RS21030 at 5086.918 kb on + strand, within ABZR88_RS21030 at 5087.132 kb on - strand at 5087.228 kb on - strand at 5087.291 kb on - strand at 5087.348 kb on + strand at 5087.348 kb on + strand at 5087.353 kb on - strand at 5087.525 kb on - strand, within ABZR88_RS21035 at 5087.525 kb on - strand, within ABZR88_RS21035 at 5087.680 kb on + strand, within ABZR88_RS21035 at 5088.000 kb on + strand, within ABZR88_RS21035 at 5088.022 kb on - strand, within ABZR88_RS21035 at 5088.064 kb on + strand, within ABZR88_RS21035 at 5088.109 kb on + strand, within ABZR88_RS21035 at 5088.109 kb on + strand, within ABZR88_RS21035
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 5,085,500 - ABZR88_RS21020 0.75 -0.3 5,085,662 + -1.8 5,085,744 + +0.1 5,085,834 - ABZR88_RS21025 0.14 -0.7 5,085,912 + ABZR88_RS21025 0.26 +1.4 5,085,966 + ABZR88_RS21025 0.34 -0.5 5,086,010 - ABZR88_RS21025 0.41 +0.0 5,086,162 + ABZR88_RS21025 0.65 -1.0 5,086,231 - ABZR88_RS21025 0.75 +0.5 5,086,269 - ABZR88_RS21025 0.81 +1.4 5,086,311 + ABZR88_RS21025 0.88 -0.1 5,086,312 - ABZR88_RS21025 0.88 -0.0 5,086,456 + -0.3 5,086,457 - +0.4 5,086,467 - -1.2 5,086,491 + -0.4 5,086,492 - +0.3 5,086,526 + +0.1 5,086,766 + ABZR88_RS21030 0.44 -1.8 5,086,782 + ABZR88_RS21030 0.46 -2.4 5,086,918 + ABZR88_RS21030 0.67 -0.2 5,087,132 - +0.2 5,087,228 - +0.1 5,087,291 - -0.3 5,087,348 + +0.6 5,087,348 + +0.4 5,087,353 - -2.9 5,087,525 - ABZR88_RS21035 0.28 +0.4 5,087,525 - ABZR88_RS21035 0.28 -0.4 5,087,680 + ABZR88_RS21035 0.44 +0.9 5,088,000 + ABZR88_RS21035 0.78 -0.7 5,088,022 - ABZR88_RS21035 0.80 -0.3 5,088,064 + ABZR88_RS21035 0.84 -0.6 5,088,109 + ABZR88_RS21035 0.89 -1.1 5,088,109 + ABZR88_RS21035 0.89 -1.8
Or see this region's nucleotide sequence