Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS12480 and ABZR88_RS12485 are separated by 111 nucleotides ABZR88_RS12485 and ABZR88_RS12490 are separated by 192 nucleotides ABZR88_RS12490 and ABZR88_RS12495 are separated by 583 nucleotides
ABZR88_RS12480: ABZR88_RS12480 - hypothetical protein, at 3,072,888 to 3,073,082
_RS12480
ABZR88_RS12485: ABZR88_RS12485 - lipopolysaccharide assembly protein LapB, at 3,073,194 to 3,073,676
_RS12485
ABZR88_RS12490: ABZR88_RS12490 - 1,4-alpha-glucan branching protein GlgB, at 3,073,869 to 3,075,776
_RS12490
ABZR88_RS12495: ABZR88_RS12495 - alpha/beta fold hydrolase, at 3,076,360 to 3,077,184
_RS12495
Position (kb)
3073
3074
3075
3076 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3072.958 kb on - strand, within ABZR88_RS12480 at 3072.987 kb on + strand, within ABZR88_RS12480 at 3073.013 kb on + strand, within ABZR88_RS12480 at 3073.099 kb on + strand at 3073.104 kb on + strand at 3073.164 kb on - strand at 3073.215 kb on + strand at 3073.317 kb on - strand, within ABZR88_RS12485 at 3073.423 kb on + strand, within ABZR88_RS12485 at 3073.867 kb on + strand at 3073.868 kb on - strand at 3073.981 kb on - strand at 3074.055 kb on - strand at 3074.082 kb on - strand, within ABZR88_RS12490 at 3074.378 kb on + strand, within ABZR88_RS12490 at 3074.380 kb on + strand, within ABZR88_RS12490 at 3074.387 kb on - strand, within ABZR88_RS12490 at 3074.459 kb on - strand, within ABZR88_RS12490 at 3074.509 kb on + strand, within ABZR88_RS12490 at 3074.509 kb on + strand, within ABZR88_RS12490 at 3074.534 kb on + strand, within ABZR88_RS12490 at 3074.535 kb on - strand, within ABZR88_RS12490 at 3074.542 kb on + strand, within ABZR88_RS12490 at 3074.921 kb on + strand, within ABZR88_RS12490 at 3075.385 kb on + strand, within ABZR88_RS12490 at 3075.386 kb on - strand, within ABZR88_RS12490 at 3075.389 kb on - strand, within ABZR88_RS12490 at 3075.477 kb on - strand, within ABZR88_RS12490 at 3075.496 kb on + strand, within ABZR88_RS12490 at 3075.606 kb on + strand at 3075.612 kb on + strand at 3075.647 kb on - strand at 3075.647 kb on - strand at 3075.998 kb on + strand at 3076.250 kb on + strand at 3076.275 kb on - strand at 3076.277 kb on - strand at 3076.277 kb on - strand at 3076.282 kb on + strand at 3076.329 kb on - strand at 3076.417 kb on - strand at 3076.491 kb on + strand, within ABZR88_RS12495 at 3076.591 kb on - strand, within ABZR88_RS12495 at 3076.618 kb on - strand, within ABZR88_RS12495 at 3076.734 kb on + strand, within ABZR88_RS12495 at 3076.734 kb on + strand, within ABZR88_RS12495 at 3076.735 kb on - strand, within ABZR88_RS12495
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 3,072,958 - ABZR88_RS12480 0.36 +0.6 3,072,987 + ABZR88_RS12480 0.51 -0.4 3,073,013 + ABZR88_RS12480 0.64 +0.3 3,073,099 + +0.1 3,073,104 + +0.7 3,073,164 - -0.9 3,073,215 + -1.7 3,073,317 - ABZR88_RS12485 0.25 -1.9 3,073,423 + ABZR88_RS12485 0.47 +0.0 3,073,867 + -2.9 3,073,868 - -0.0 3,073,981 - -3.4 3,074,055 - -1.6 3,074,082 - ABZR88_RS12490 0.11 +0.1 3,074,378 + ABZR88_RS12490 0.27 +0.6 3,074,380 + ABZR88_RS12490 0.27 -0.8 3,074,387 - ABZR88_RS12490 0.27 -1.7 3,074,459 - ABZR88_RS12490 0.31 -2.9 3,074,509 + ABZR88_RS12490 0.34 -0.9 3,074,509 + ABZR88_RS12490 0.34 -0.7 3,074,534 + ABZR88_RS12490 0.35 -0.6 3,074,535 - ABZR88_RS12490 0.35 -1.9 3,074,542 + ABZR88_RS12490 0.35 -1.9 3,074,921 + ABZR88_RS12490 0.55 -0.9 3,075,385 + ABZR88_RS12490 0.79 -1.2 3,075,386 - ABZR88_RS12490 0.80 -1.9 3,075,389 - ABZR88_RS12490 0.80 -1.2 3,075,477 - ABZR88_RS12490 0.84 +1.1 3,075,496 + ABZR88_RS12490 0.85 -3.7 3,075,606 + -2.5 3,075,612 + -2.6 3,075,647 - -0.9 3,075,647 - -0.6 3,075,998 + -0.7 3,076,250 + -0.6 3,076,275 - +0.5 3,076,277 - -0.4 3,076,277 - -0.1 3,076,282 + +0.3 3,076,329 - -0.4 3,076,417 - +0.5 3,076,491 + ABZR88_RS12495 0.16 -0.5 3,076,591 - ABZR88_RS12495 0.28 -0.3 3,076,618 - ABZR88_RS12495 0.31 -0.1 3,076,734 + ABZR88_RS12495 0.45 -0.2 3,076,734 + ABZR88_RS12495 0.45 -0.3 3,076,735 - ABZR88_RS12495 0.45 -0.2
Or see this region's nucleotide sequence