Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS12490

Experiment: R2A motility; outer cut

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR88_RS12480 and ABZR88_RS12485 are separated by 111 nucleotidesABZR88_RS12485 and ABZR88_RS12490 are separated by 192 nucleotidesABZR88_RS12490 and ABZR88_RS12495 are separated by 583 nucleotides ABZR88_RS12480: ABZR88_RS12480 - hypothetical protein, at 3,072,888 to 3,073,082 _RS12480 ABZR88_RS12485: ABZR88_RS12485 - lipopolysaccharide assembly protein LapB, at 3,073,194 to 3,073,676 _RS12485 ABZR88_RS12490: ABZR88_RS12490 - 1,4-alpha-glucan branching protein GlgB, at 3,073,869 to 3,075,776 _RS12490 ABZR88_RS12495: ABZR88_RS12495 - alpha/beta fold hydrolase, at 3,076,360 to 3,077,184 _RS12495 Position (kb) 3073 3074 3075 3076Strain fitness (log2 ratio) -3 -2 -1 0 1at 3072.958 kb on - strand, within ABZR88_RS12480at 3072.987 kb on + strand, within ABZR88_RS12480at 3073.013 kb on + strand, within ABZR88_RS12480at 3073.099 kb on + strandat 3073.104 kb on + strandat 3073.164 kb on - strandat 3073.215 kb on + strandat 3073.317 kb on - strand, within ABZR88_RS12485at 3073.423 kb on + strand, within ABZR88_RS12485at 3073.867 kb on + strandat 3073.868 kb on - strandat 3073.981 kb on - strandat 3074.055 kb on - strandat 3074.082 kb on - strand, within ABZR88_RS12490at 3074.378 kb on + strand, within ABZR88_RS12490at 3074.380 kb on + strand, within ABZR88_RS12490at 3074.387 kb on - strand, within ABZR88_RS12490at 3074.459 kb on - strand, within ABZR88_RS12490at 3074.509 kb on + strand, within ABZR88_RS12490at 3074.509 kb on + strand, within ABZR88_RS12490at 3074.534 kb on + strand, within ABZR88_RS12490at 3074.535 kb on - strand, within ABZR88_RS12490at 3074.542 kb on + strand, within ABZR88_RS12490at 3074.921 kb on + strand, within ABZR88_RS12490at 3075.385 kb on + strand, within ABZR88_RS12490at 3075.386 kb on - strand, within ABZR88_RS12490at 3075.389 kb on - strand, within ABZR88_RS12490at 3075.477 kb on - strand, within ABZR88_RS12490at 3075.496 kb on + strand, within ABZR88_RS12490at 3075.606 kb on + strandat 3075.612 kb on + strandat 3075.647 kb on - strandat 3075.647 kb on - strandat 3075.998 kb on + strandat 3076.250 kb on + strandat 3076.275 kb on - strandat 3076.277 kb on - strandat 3076.277 kb on - strandat 3076.282 kb on + strandat 3076.329 kb on - strandat 3076.417 kb on - strandat 3076.491 kb on + strand, within ABZR88_RS12495at 3076.591 kb on - strand, within ABZR88_RS12495at 3076.618 kb on - strand, within ABZR88_RS12495at 3076.734 kb on + strand, within ABZR88_RS12495at 3076.734 kb on + strand, within ABZR88_RS12495at 3076.735 kb on - strand, within ABZR88_RS12495

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
remove
3,072,958 - ABZR88_RS12480 0.36 +0.6
3,072,987 + ABZR88_RS12480 0.51 -0.4
3,073,013 + ABZR88_RS12480 0.64 +0.3
3,073,099 + +0.1
3,073,104 + +0.7
3,073,164 - -0.9
3,073,215 + -1.7
3,073,317 - ABZR88_RS12485 0.25 -1.9
3,073,423 + ABZR88_RS12485 0.47 +0.0
3,073,867 + -2.9
3,073,868 - -0.0
3,073,981 - -3.4
3,074,055 - -1.6
3,074,082 - ABZR88_RS12490 0.11 +0.1
3,074,378 + ABZR88_RS12490 0.27 +0.6
3,074,380 + ABZR88_RS12490 0.27 -0.8
3,074,387 - ABZR88_RS12490 0.27 -1.7
3,074,459 - ABZR88_RS12490 0.31 -2.9
3,074,509 + ABZR88_RS12490 0.34 -0.9
3,074,509 + ABZR88_RS12490 0.34 -0.7
3,074,534 + ABZR88_RS12490 0.35 -0.6
3,074,535 - ABZR88_RS12490 0.35 -1.9
3,074,542 + ABZR88_RS12490 0.35 -1.9
3,074,921 + ABZR88_RS12490 0.55 -0.9
3,075,385 + ABZR88_RS12490 0.79 -1.2
3,075,386 - ABZR88_RS12490 0.80 -1.9
3,075,389 - ABZR88_RS12490 0.80 -1.2
3,075,477 - ABZR88_RS12490 0.84 +1.1
3,075,496 + ABZR88_RS12490 0.85 -3.7
3,075,606 + -2.5
3,075,612 + -2.6
3,075,647 - -0.9
3,075,647 - -0.6
3,075,998 + -0.7
3,076,250 + -0.6
3,076,275 - +0.5
3,076,277 - -0.4
3,076,277 - -0.1
3,076,282 + +0.3
3,076,329 - -0.4
3,076,417 - +0.5
3,076,491 + ABZR88_RS12495 0.16 -0.5
3,076,591 - ABZR88_RS12495 0.28 -0.3
3,076,618 - ABZR88_RS12495 0.31 -0.1
3,076,734 + ABZR88_RS12495 0.45 -0.2
3,076,734 + ABZR88_RS12495 0.45 -0.3
3,076,735 - ABZR88_RS12495 0.45 -0.2

Or see this region's nucleotide sequence